>UPPS_HELPY (P55984) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 234

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 268 WWRRAADIFIPPYLWLWHEPDDMTAIVVEFWQLFRELG 155
           W    A++F  P LW    P D+  I+ +F++  R+ G
Sbjct: 193 WQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG 230

>UPPS_HELPJ (Q9ZK05) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 234

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 268 WWRRAADIFIPPYLWLWHEPDDMTAIVVEFWQLFRELG 155
           W    A++F  P LW    P D+  I+ +F++  R+ G
Sbjct: 193 WQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG 230

>APC_RAT (P70478) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2842

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 487  ASVXYAIRSACCAPRNPTSESWGIPSLKVGSSCGNSSHRSEDLRKDRPSEFGAP----PS 320
            +S+  A  +A C  R  +S+S  I SLK G S G+  H + D  +   +    P    P 
Sbjct: 2112 SSLHQAAAAAACLSRQASSDSDSILSLKSGVSLGSPFHLTPDQEEKPFTSHKGPRILKPG 2171

Query: 319  RAFNIEAK 296
                +EAK
Sbjct: 2172 EKSTLEAK 2179

>APC_MOUSE (Q61315) Adenomatous polyposis coli protein (Protein APC) (mAPC)|
          Length = 2845

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -2

Query: 487  ASVXYAIRSACCAPRNPTSESWGIPSLKVGSSCGNSSHRSEDLRKDRP 344
            +S+  A  +A C  R  +S+S  I SLK G S G+  H + D ++++P
Sbjct: 2112 SSLHQAAAAAACLSRQASSDSDSILSLKSGISLGSPFHLTPD-QEEKP 2158

>MUTL_VIBF1 (Q5E2C6) DNA mismatch repair protein mutL|
          Length = 660

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 472 AIRSACCAPRNPTSESWGIPSLKVGSSCGNSSHRSEDLRKDRPSE 338
           A+ S    P     +SW IP   VGSS  NS+  S     D+P++
Sbjct: 382 AVESTPSYPNKAPLDSW-IPKGNVGSSSSNSTAPSRSFHTDKPTK 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,598,237
Number of Sequences: 219361
Number of extensions: 1271502
Number of successful extensions: 2948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2948
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)