| Clone Name | rbaal20g14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468400.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2355 Score = 285 bits (144), Expect = 8e-74 Identities = 273/316 (86%) Strand = Plus / Minus Query: 271 tcccagccgtcagaaacttggcgaccttctcgacattgttcaagatgatcctgtcttcct 330 ||||||| |||| |||||| | |||||||| |||||||||||||||| ||||||||||| Sbjct: 2197 tcccagctgtcaaaaacttcacaaccttctcaacattgttcaagatgaccctgtcttcct 2138 Query: 331 ctgtgattgtaggaagcaatgctcccgacctcacaggaaccatgccgaaaaccgggacgg 390 |||||||||||||||||| ||||| | || ||||||||||||| |||||| ||| | Sbjct: 2137 ctgtgattgtaggaagcagtgctctagctctgacaggaaccatgctgaaaactggggtag 2078 Query: 391 gatttctgaccccaaaagatgaagcaatttgtagcaattgctcccttgaaaccgcgtcga 450 ||||| | ||||||||||| ||||||||||| || ||||||||||||||| || || | Sbjct: 2077 catttcctagcccaaaagatgcagcaatttgtatcagttgctcccttgaaactgcatcta 2018 Query: 451 tggctttcacaatctcatcaagaatgaactcccggaagaagtcacccctgtcagagagta 510 ||||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||| Sbjct: 2017 tggctttgacaatctcatcaagaatgaactccctaaaaaagtcgcccctctcagagagta 1958 Query: 511 gaaaagagagagcagcccgagctttgattggattttcaggttgggaaatggccattggga 570 ||||||| ||||||||||||||||||| ||| | ||||| || || ||||||||||| | Sbjct: 1957 gaaaagaaagagcagcccgagctttgactggttgctcaggctgtgatatggccattggaa 1898 Query: 571 atgcaggaactaaact 586 |||||||||||||||| Sbjct: 1897 atgcaggaactaaact 1882 Score = 131 bits (66), Expect = 3e-27 Identities = 120/138 (86%) Strand = Plus / Minus Query: 113 tcacaaaaatgcttcccggatcacccgtgcgaatacccgtgatgacaaccggctcaagac 172 |||||||||||| |||||||||| |||||| ||||| || |||||||||||||||| ||| Sbjct: 2355 tcacaaaaatgcctcccggatcaaccgtgcaaatactcgcgatgacaaccggctcatgac 2296 Query: 173 atctggtaggatcttcgatgagatgcttggtagcacaggtaaaagctcttgcaccagaga 232 ||||||||||||||||| || ||||| || | |||||||| ||||||||| || ||| | Sbjct: 2295 ctctggtaggatcttcgacgaaatgctcggcaacacaggtagaagctcttgtacaagata 2236 Query: 233 cacgacatttacgtcccc 250 ||| |||||||| ||||| Sbjct: 2235 cacaacatttacatcccc 2218
>dbj|AK058624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C01, full insert sequence Length = 1203 Score = 285 bits (144), Expect = 8e-74 Identities = 273/316 (86%) Strand = Plus / Minus Query: 271 tcccagccgtcagaaacttggcgaccttctcgacattgttcaagatgatcctgtcttcct 330 ||||||| |||| |||||| | |||||||| |||||||||||||||| ||||||||||| Sbjct: 718 tcccagctgtcaaaaacttcacaaccttctcaacattgttcaagatgaccctgtcttcct 659 Query: 331 ctgtgattgtaggaagcaatgctcccgacctcacaggaaccatgccgaaaaccgggacgg 390 |||||||||||||||||| ||||| | || ||||||||||||| |||||| ||| | Sbjct: 658 ctgtgattgtaggaagcagtgctctagctctgacaggaaccatgctgaaaactggggtag 599 Query: 391 gatttctgaccccaaaagatgaagcaatttgtagcaattgctcccttgaaaccgcgtcga 450 ||||| | ||||||||||| ||||||||||| || ||||||||||||||| || || | Sbjct: 598 catttcctagcccaaaagatgcagcaatttgtatcagttgctcccttgaaactgcatcta 539 Query: 451 tggctttcacaatctcatcaagaatgaactcccggaagaagtcacccctgtcagagagta 510 ||||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||| Sbjct: 538 tggctttgacaatctcatcaagaatgaactccctaaaaaagtcgcccctctcagagagta 479 Query: 511 gaaaagagagagcagcccgagctttgattggattttcaggttgggaaatggccattggga 570 ||||||| ||||||||||||||||||| ||| | ||||| || || ||||||||||| | Sbjct: 478 gaaaagaaagagcagcccgagctttgactggttgctcaggctgtgatatggccattggaa 419 Query: 571 atgcaggaactaaact 586 |||||||||||||||| Sbjct: 418 atgcaggaactaaact 403 Score = 143 bits (72), Expect = 7e-31 Identities = 126/144 (87%) Strand = Plus / Minus Query: 107 atcacttcacaaaaatgcttcccggatcacccgtgcgaatacccgtgatgacaaccggct 166 |||||||||||||||||| |||||||||| |||||| ||||| || |||||||||||||| Sbjct: 882 atcacttcacaaaaatgcctcccggatcaaccgtgcaaatactcgcgatgacaaccggct 823 Query: 167 caagacatctggtaggatcttcgatgagatgcttggtagcacaggtaaaagctcttgcac 226 || ||| ||||||||||||||||| || ||||| || | |||||||| ||||||||| || Sbjct: 822 catgacctctggtaggatcttcgacgaaatgctcggcaacacaggtagaagctcttgtac 763 Query: 227 cagagacacgacatttacgtcccc 250 ||| |||| |||||||| ||||| Sbjct: 762 aagatacacaacatttacatcccc 739
>dbj|AK071389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091P22, full insert sequence Length = 895 Score = 278 bits (140), Expect = 2e-71 Identities = 272/316 (86%) Strand = Plus / Minus Query: 271 tcccagccgtcagaaacttggcgaccttctcgacattgttcaagatgatcctgtcttcct 330 ||||||| |||| |||||| | |||||||| |||||||||||||||| ||||||||||| Sbjct: 575 tcccagctgtcaaaaacttcacaaccttctcaacattgttcaagatgaccctgtcttcct 516 Query: 331 ctgtgattgtaggaagcaatgctcccgacctcacaggaaccatgccgaaaaccgggacgg 390 |||||||||||||||||| ||||| | || ||||||||||||| |||||| ||| | Sbjct: 515 ctgtgattgtaggaagcagtgctctagctctgacaggaaccatgctgaaaactggggtag 456 Query: 391 gatttctgaccccaaaagatgaagcaatttgtagcaattgctcccttgaaaccgcgtcga 450 ||||| | ||||||||||| ||||||||||| || ||||||||||||||| || || | Sbjct: 455 catttcctagcccaaaagatgcagcaatttgtatcagttgctcccttgaaactgcatcta 396 Query: 451 tggctttcacaatctcatcaagaatgaactcccggaagaagtcacccctgtcagagagta 510 ||||||| ||||||||||||||||||||||||| || |||| ||||| |||||||||| Sbjct: 395 tggctttgacaatctcatcaagaatgaactccctaaaaaagttgcccctctcagagagta 336 Query: 511 gaaaagagagagcagcccgagctttgattggattttcaggttgggaaatggccattggga 570 ||||||| ||||||||||||||||||| ||| | ||||| || || ||||||||||| | Sbjct: 335 gaaaagaaagagcagcccgagctttgactggttgctcaggctgtgatatggccattggaa 276 Query: 571 atgcaggaactaaact 586 |||||||||||||||| Sbjct: 275 atgcaggaactaaact 260 Score = 135 bits (68), Expect = 2e-28 Identities = 125/144 (86%) Strand = Plus / Minus Query: 107 atcacttcacaaaaatgcttcccggatcacccgtgcgaatacccgtgatgacaaccggct 166 |||||||||||||||||| ||||||| || |||||| ||||| || |||||||||||||| Sbjct: 739 atcacttcacaaaaatgcctcccggaccaaccgtgcaaatactcgcgatgacaaccggct 680 Query: 167 caagacatctggtaggatcttcgatgagatgcttggtagcacaggtaaaagctcttgcac 226 || ||| ||||||||||||||||| || ||||| || | |||||||| ||||||||| || Sbjct: 679 catgacctctggtaggatcttcgacgaaatgctcggcaacacaggtagaagctcttgtac 620 Query: 227 cagagacacgacatttacgtcccc 250 ||| |||| |||||||| ||||| Sbjct: 619 aagatacacaacatttacatcccc 596
>gb|AY112358.1| Zea mays CL26230_1 mRNA sequence Length = 580 Score = 194 bits (98), Expect = 2e-46 Identities = 212/250 (84%) Strand = Plus / Plus Query: 126 tcccggatcacccgtgcgaatacccgtgatgacaaccggctcaagacatctggtaggatc 185 |||||||| | |||||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 145 tcccggattatccgtgcaaatacccgtgacgacaaccggctcaagacatcaggtaggatc 204 Query: 186 ttcgatgagatgcttggtagcacaggtaaaagctcttgcaccagagacacgacatttacg 245 ||||| ||||||| ||| | |||||||| |||||||||||||| |||||| || || ||| Sbjct: 205 ttcgacgagatgcctggcaacacaggtagaagctcttgcaccacagacaccacgttcacg 264 Query: 246 tccccgttgactgtttgatttgccgtcccagccgtcagaaacttggcgaccttctcgaca 305 |||||| |||||| || |||| ||||| | ||||| ||||| | ||||||||||| Sbjct: 265 tccccgcccactgttggagttgcagtcccggatgtcaggaacttcacaaccttctcgacg 324 Query: 306 ttgttcaagatgatcctgtcttcctctgtgattgtaggaagcaatgctcccgacctcaca 365 ||||||| ||||| |||||||||||||| ||| || ||||||||||| | | ||| ||| Sbjct: 325 ttgttcaggatgaccctgtcttcctctgggatcgtcggaagcaatgccctggccctgaca 384 Query: 366 ggaaccatgc 375 |||||||||| Sbjct: 385 ggaaccatgc 394 Score = 89.7 bits (45), Expect = 1e-14 Identities = 76/88 (86%) Strand = Plus / Plus Query: 429 tgctcccttgaaaccgcgtcgatggctttcacaatctcatcaagaatgaactcccggaag 488 ||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||| ||| Sbjct: 448 tgctcccttgaaatcgcatcgatggctttcacaatctcgtcaagaataaactcccgaaag 507 Query: 489 aagtcacccctgtcagagagtagaaaag 516 |||| | |||||||||||||||| Sbjct: 508 aagttnnnnntctcagagagtagaaaag 535
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 5e-35 Identities = 166/195 (85%) Strand = Plus / Plus Query: 271 tcccagccgtcagaaacttggcgaccttctcgacattgttcaagatgatcctgtcttcct 330 ||||||| |||| |||||| | |||||||| |||||||||||||||| ||||||||||| Sbjct: 35024025 tcccagctgtcaaaaacttcacaaccttctcaacattgttcaagatgaccctgtcttcct 35024084 Query: 331 ctgtgattgtaggaagcaatgctcccgacctcacaggaaccatgccgaaaaccgggacgg 390 |||||||||||||||||| ||||| | || ||||||||||||| |||||| ||| | Sbjct: 35024085 ctgtgattgtaggaagcagtgctctagctctgacaggaaccatgctgaaaactggggtag 35024144 Query: 391 gatttctgaccccaaaagatgaagcaatttgtagcaattgctcccttgaaaccgcgtcga 450 ||||| | ||||||||||| ||||||||||| || ||||||||||||||| || || | Sbjct: 35024145 catttcctagcccaaaagatgcagcaatttgtatcagttgctcccttgaaactgcatcta 35024204 Query: 451 tggctttcacaatct 465 ||||||| ||||||| Sbjct: 35024205 tggctttgacaatct 35024219 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 107 atcacttcacaaaaatgcttcccggatcacccgtgcgaatacccgtgatgacaaccggct 166 |||||||||||||||||| |||||||||| |||||| ||||| || |||||||||||||| Sbjct: 35023728 atcacttcacaaaaatgcctcccggatcaaccgtgcaaatactcgcgatgacaaccggct 35023787 Query: 167 caagacatctggtaggatcttcgatgagatgcttggtagcacaggtaaaagctcttgcac 226 || ||| ||||||||||||||||| || ||||| || | |||||||| ||||||||| || Sbjct: 35023788 catgacctctggtaggatcttcgacgaaatgctcggcaacacaggtagaagctcttgtac 35023847 Query: 227 cagagacacgacatttac 244 ||| |||| |||||||| Sbjct: 35023848 aagatacacaacatttac 35023865 Score = 133 bits (67), Expect = 7e-28 Identities = 109/123 (88%) Strand = Plus / Plus Query: 464 ctcatcaagaatgaactcccggaagaagtcacccctgtcagagagtagaaaagagagagc 523 |||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| Sbjct: 35024349 ctcatcaagaatgaactccctaaaaaagtcgcccctctcagagagtagaaaagaaagagc 35024408 Query: 524 agcccgagctttgattggattttcaggttgggaaatggccattgggaatgcaggaactaa 583 |||||||||||||| ||| | ||||| || || ||||||||||| |||||||||||||| Sbjct: 35024409 agcccgagctttgactggttgctcaggctgtgatatggccattggaaatgcaggaactaa 35024468 Query: 584 act 586 ||| Sbjct: 35024469 act 35024471
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 157 bits (79), Expect = 5e-35 Identities = 166/195 (85%) Strand = Plus / Plus Query: 271 tcccagccgtcagaaacttggcgaccttctcgacattgttcaagatgatcctgtcttcct 330 ||||||| |||| |||||| | |||||||| |||||||||||||||| ||||||||||| Sbjct: 84366 tcccagctgtcaaaaacttcacaaccttctcaacattgttcaagatgaccctgtcttcct 84425 Query: 331 ctgtgattgtaggaagcaatgctcccgacctcacaggaaccatgccgaaaaccgggacgg 390 |||||||||||||||||| ||||| | || ||||||||||||| |||||| ||| | Sbjct: 84426 ctgtgattgtaggaagcagtgctctagctctgacaggaaccatgctgaaaactggggtag 84485 Query: 391 gatttctgaccccaaaagatgaagcaatttgtagcaattgctcccttgaaaccgcgtcga 450 ||||| | ||||||||||| ||||||||||| || ||||||||||||||| || || | Sbjct: 84486 catttcctagcccaaaagatgcagcaatttgtatcagttgctcccttgaaactgcatcta 84545 Query: 451 tggctttcacaatct 465 ||||||| ||||||| Sbjct: 84546 tggctttgacaatct 84560 Score = 139 bits (70), Expect = 1e-29 Identities = 121/138 (87%) Strand = Plus / Plus Query: 107 atcacttcacaaaaatgcttcccggatcacccgtgcgaatacccgtgatgacaaccggct 166 |||||||||||||||||| |||||||||| |||||| ||||| || |||||||||||||| Sbjct: 84069 atcacttcacaaaaatgcctcccggatcaaccgtgcaaatactcgcgatgacaaccggct 84128 Query: 167 caagacatctggtaggatcttcgatgagatgcttggtagcacaggtaaaagctcttgcac 226 || ||| ||||||||||||||||| || ||||| || | |||||||| ||||||||| || Sbjct: 84129 catgacctctggtaggatcttcgacgaaatgctcggcaacacaggtagaagctcttgtac 84188 Query: 227 cagagacacgacatttac 244 ||| |||| |||||||| Sbjct: 84189 aagatacacaacatttac 84206 Score = 133 bits (67), Expect = 7e-28 Identities = 109/123 (88%) Strand = Plus / Plus Query: 464 ctcatcaagaatgaactcccggaagaagtcacccctgtcagagagtagaaaagagagagc 523 |||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||| Sbjct: 84690 ctcatcaagaatgaactccctaaaaaagtcgcccctctcagagagtagaaaagaaagagc 84749 Query: 524 agcccgagctttgattggattttcaggttgggaaatggccattgggaatgcaggaactaa 583 |||||||||||||| ||| | ||||| || || ||||||||||| |||||||||||||| Sbjct: 84750 agcccgagctttgactggttgctcaggctgtgatatggccattggaaatgcaggaactaa 84809 Query: 584 act 586 ||| Sbjct: 84810 act 84812
>gb|AC135161.11| Medicago truncatula clone mth2-30k24, complete sequence Length = 88701 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 tggtagcacaggtaaaagctct 221 |||||||||||||||||||||| Sbjct: 71224 tggtagcacaggtaaaagctct 71203
>gb|AC010221.8| Homo sapiens chromosome 5 clone CTC-262J4, complete sequence Length = 101937 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 tctgaccccaaaagatgaagca 416 |||||||||||||||||||||| Sbjct: 66996 tctgaccccaaaagatgaagca 66975
>gb|AC026783.5| Homo sapiens chromosome 5 clone CTD-2129A22, complete sequence Length = 200232 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 395 tctgaccccaaaagatgaagca 416 |||||||||||||||||||||| Sbjct: 10391 tctgaccccaaaagatgaagca 10412
>gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome 7, complete sequence Length = 165198 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 cagaaggaaaacaaaactgag 106 ||||||||||||||||||||| Sbjct: 75277 cagaaggaaaacaaaactgag 75297
>gb|AC132424.3| Mus musculus BAC clone RP23-310P13 from chromosome 15, complete sequence Length = 199655 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtataa 50 |||||||||||||| |||||||||| Sbjct: 156859 gtgtatgtgtgtgttgtttgtataa 156835
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete sequence Length = 90387 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 aaaaggaaaaaggagaaataa 69 ||||||||||||||||||||| Sbjct: 18352 aaaaggaaaaaggagaaataa 18332
>gb|AC124418.4| Mus musculus BAC clone RP24-318G17 from chromosome 18, complete sequence Length = 167998 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tagtttgtataaaaggaaaaa 59 ||||||||||||||||||||| Sbjct: 152043 tagtttgtataaaaggaaaaa 152023
>gb|AC122330.4| Mus musculus BAC clone RP23-342G7 from chromosome 18, complete sequence Length = 194291 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 tagtttgtataaaaggaaaaa 59 ||||||||||||||||||||| Sbjct: 107480 tagtttgtataaaaggaaaaa 107460
>emb|BX784395.1| Human DNA sequence from clone RP5-1190M18 on chromosome 1 Contains part of the VPS13D gene for vacuolar protein sorting 13D (yeast), complete sequence Length = 4359 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gtagcaattgctcccttgaaa 441 ||||||||||||||||||||| Sbjct: 3263 gtagcaattgctcccttgaaa 3283
>emb|BX682532.4| Human DNA sequence from clone WI2-801539E12 on chromosome 1 Contains part of the VPS13D gene for vacuolar protein sorting 13D (yeast), complete sequence Length = 41821 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gtagcaattgctcccttgaaa 441 ||||||||||||||||||||| Sbjct: 904 gtagcaattgctcccttgaaa 924
>emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chromosome 1 Contains a novel gene, complete sequence Length = 203279 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttgt 46 ||||||||||||||||||||| Sbjct: 81133 gtgtatgtgtgtgtagtttgt 81153
>emb|AL078597.11|HSDJ442I1 Human DNA sequence from clone RP3-442I1 on chromosome 6q12-13 Contains the 5' end of a novel gene, complete sequence Length = 138209 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 aaaggagaaataagtctctaa 77 ||||||||||||||||||||| Sbjct: 98143 aaaggagaaataagtctctaa 98163
>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152883 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 tataaaaggaaaaaggagaaa 66 ||||||||||||||||||||| Sbjct: 67292 tataaaaggaaaaaggagaaa 67272
>gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 136511 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 tataaaaggaaaaaggagaaa 66 ||||||||||||||||||||| Sbjct: 135352 tataaaaggaaaaaggagaaa 135372
>gb|AC009300.2| Homo sapiens BAC clone RP11-52A21 from 2, complete sequence Length = 109939 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 aaaaggaaaaaggagaaataa 69 ||||||||||||||||||||| Sbjct: 37794 aaaaggaaaaaggagaaataa 37774
>emb|X54399.1|RDU6RNA R.dacryoidum intron from U6 small nuclear RNA gene Length = 186 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 atgctcccgacctcacaggaa 369 ||||||||||||||||||||| Sbjct: 117 atgctcccgacctcacaggaa 137
>gb|AC132374.4| Mus musculus BAC clone RP24-69E21 from 10, complete sequence Length = 188514 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgt 46 ||||||||||||||||||||| Sbjct: 105080 gtgtatgtgtgtgtagtttgt 105060
>emb|AL445229.12| Human DNA sequence from clone RP5-1190M18 on chromosome 1, complete sequence Length = 32458 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 gtagcaattgctcccttgaaa 441 ||||||||||||||||||||| Sbjct: 3263 gtagcaattgctcccttgaaa 3283
>emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on chromosome 11, complete sequence Length = 142565 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 aaaaggagaaataagtctcta 76 ||||||||||||||||||||| Sbjct: 139298 aaaaggagaaataagtctcta 139318
>gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, complete sequence Length = 172370 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tgccgaaaaccgggacggga 392 |||||||||||||||||||| Sbjct: 108000 tgccgaaaaccgggacggga 108019
>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence Length = 197843 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgtatgtgtgtgtagtttgt 46 |||||||||||||||||||| Sbjct: 69357 tgtatgtgtgtgtagtttgt 69376
>ref|NG_002392.2| Homo sapiens major histocompatibility complex, class II, DR52 haplotype (DR52) on chromosome 6 Length = 139182 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 89906 ataaaaggaaaaaggagaaa 89887
>ref|NG_002432.1| Homo sapiens major histocompatibility complex, class II, DR51 haplotype (DR51) on chromosome 6 Length = 137374 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 89568 ataaaaggaaaaaggagaaa 89549
>gb|AC103632.8| Mus musculus chromosome 1, clone RP24-555D5, complete sequence Length = 177269 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 aaggaaaacaaaactgagat 108 |||||||||||||||||||| Sbjct: 71229 aaggaaaacaaaactgagat 71210
>gb|AF125313.2| Mus musculus chromosome X clones CT7-508o14, CT7-549H18, CT7-552o8, proximal part, complete sequence Length = 107641 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tggctttcacaatctcatca 470 |||||||||||||||||||| Sbjct: 83243 tggctttcacaatctcatca 83262
>ref|NM_001001182.2| Mus musculus bromodomain adjacent to zinc finger domain, 2B (Baz2b), mRNA Length = 8012 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 ttgtataaaaggaaaaaggagaaa 66 |||| ||||||||||||||||||| Sbjct: 6733 ttgtttaaaaggaaaaaggagaaa 6710
>gb|AC135509.2| Mus musculus BAC clone RP24-448I12 from chromosome 17, complete sequence Length = 141307 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttgtata 49 ||||||||||||||||| |||||| Sbjct: 34020 gtgtatgtgtgtgtagtgtgtata 34043
>ref|XM_654351.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1839.2), mRNA Length = 882 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 tgggaaatggccattgggaa 571 |||||||||||||||||||| Sbjct: 373 tgggaaatggccattgggaa 392
>gb|AC117702.10| Mus musculus chromosome 10, clone RP23-464I2, complete sequence Length = 147559 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 |||| ||||||||||||||||||| Sbjct: 126316 gtgtgtgtgtgtgtagtttgtata 126293
>gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, complete sequence Length = 193434 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 |||| ||||||||||||||||||| Sbjct: 21266 gtgtgtgtgtgtgtagtttgtata 21243
>gb|AC123551.5| Mus musculus BAC clone RP24-330P10 from chromosome 1, complete sequence Length = 167597 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aaggaaaacaaaactgagat 108 |||||||||||||||||||| Sbjct: 27398 aaggaaaacaaaactgagat 27417
>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence Length = 192969 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 agaaggaaaacaaaactgagatca 110 ||||| |||||||||||||||||| Sbjct: 178615 agaagcaaaacaaaactgagatca 178592
>gb|AC117210.3| Mus musculus BAC clone RP23-286E20 from 10, complete sequence Length = 178173 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 |||| ||||||||||||||||||| Sbjct: 140338 gtgtctgtgtgtgtagtttgtata 140315
>gb|AC123043.2| Mus musculus BAC clone RP24-547G7 from 13, complete sequence Length = 230940 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 agaaggaaaacaaaactgagatca 110 ||||| |||||||||||||||||| Sbjct: 222204 agaagcaaaacaaaactgagatca 222227
>ref|XM_645641.1| Entamoeba histolytica HM-1:IMSS V-type ATPase, D subunit, putative (202.t00016) partial mRNA Length = 762 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tttcacaatctcatcaagaa 474 |||||||||||||||||||| Sbjct: 323 tttcacaatctcatcaagaa 342
>ref|XM_646506.1| Entamoeba histolytica HM-1:IMSS V-type ATPase, D subunit, putative (156.t00014) partial mRNA Length = 762 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tttcacaatctcatcaagaa 474 |||||||||||||||||||| Sbjct: 323 tttcacaatctcatcaagaa 342
>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence Length = 226307 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tctaatttcctgtcagaagg 92 |||||||||||||||||||| Sbjct: 189839 tctaatttcctgtcagaagg 189820
>gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Hospital Oakland Research Institute) complete sequence Length = 245907 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tatgtgtgtgtagtttgtataaaa 52 |||||||||||||||||| ||||| Sbjct: 150814 tatgtgtgtgtagtttgtttaaaa 150837
>emb|Z84814.1|HS172K2 Human DNA sequence from clone RP1-172K2 on chromosome 6p21.1-21.3 Contains the HLA-DRB3, HLA-DRB9 and HLA-DRA genes for major histocompatibility complex class II DR beta 3*01012, beta 9 (pseudogene) and alpha and the 5' end of the BTNL2 gene encoding MHC class II associated butyrophilin-like 2. Contains a CpG island, ESTs, STSs and GSSs, complete sequence Length = 131234 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 9559 ataaaaggaaaaaggagaaa 9578
>emb|BX120007.9| Human DNA sequence from clone DASS-397D15 on chromosome 6, complete sequence Length = 109682 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 91321 ataaaaggaaaaaggagaaa 91302
>emb|AL929581.5| Human DNA sequence from clone DAQB-97F8 on chromosome 6 Contains the 5' end of the HLA-DRB9 pseudogene for major histocompatibility complex, class II, DR beta 9, the HLA-DRB3 gene for major histocompatibility complex, class II DR beta 3, the HLA-DRB2 pseudogene for major histocompatibility complex, class II, DR beta 2, the HLA-DRB1 gene for major histocompatibility complex, class II, DR beta 1and one CpG island, complete sequence Length = 118771 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 52423 ataaaaggaaaaaggagaaa 52404
>emb|AL713966.7| Human DNA sequence from clone XXbac-161M6 on chromosome 6 contains the HLA-DRB5 gene for major histocompatibility complex, class II, DR beta 5, the HLA-DRB6 pseudogene for major histocompatibility complex, class II, DR beta 6, the HLA-DRB1 gene for major histocompatibility complex, class II, DR beta 1 and one CpG island, complete sequence Length = 124047 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 76241 ataaaaggaaaaaggagaaa 76222
>emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on chromosome 6 contains the HLA-DRB3 gene for major histocompatibility complex, class II, DR beta 3, a major histocompatibility complex, class II, DR beta pseudogene, the HLA-DRB1 gene for major histocompatibility complex, class II, DR beta 1 and one CpG island, complete sequence Length = 130819 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 41757 ataaaaggaaaaaggagaaa 41738
>emb|AL136219.17| Human DNA sequence from clone RP11-149B7 on chromosome 13 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD)(GAPDH) pseudogene, 2 novel genes, a H2B histone family, member H (H2BFH)(H2B.h, H2B/h, dJ221C16.8) pseudogene, the 3' end of the EFHA1 gene for EF hand domain family, member A1 and three CpG islands, complete sequence Length = 167830 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 taaaaggaaaaaggagaaat 67 |||||||||||||||||||| Sbjct: 20729 taaaaggaaaaaggagaaat 20748
>emb|AL080239.12|HSG256O22 Human DNA sequence from clone GS1-256O22 on chromosome Xq26.3-28 Contains a novel pseudogene, the DKFZp547M2010 gene, a heterogeneous nuclear ribonucleoprotein H pseudogene, a novel gene and a CpG island, complete sequence Length = 216215 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 agtctctaatttcctgtcag 88 |||||||||||||||||||| Sbjct: 121883 agtctctaatttcctgtcag 121902
>emb|X15378.1|MMPO Mouse gene for the light and heavy chains of myeloperoxidase Length = 11913 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttgtata 49 ||||||||||||||||| |||||| Sbjct: 6476 gtgtatgtgtgtgtagtatgtata 6499
>gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202181 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaaggaaaaaggagaaata 68 |||||||||||||||||||| Sbjct: 201203 aaaaggaaaaaggagaaata 201222
>gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, complete sequence Length = 169439 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gtgattgtaggaagcaatgc 352 |||||||||||||||||||| Sbjct: 12245 gtgattgtaggaagcaatgc 12264
>emb|BX927235.7| Human DNA sequence from clone DAMA-25D9 on chromosome 6, complete sequence Length = 99242 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 41719 ataaaaggaaaaaggagaaa 41700
>emb|AL929409.5| Mouse DNA sequence from clone RP23-402H11 on chromosome 4 Contains the 3' end of the Cdk5rap2 gene for CDK5 regulatory subunit associated protein 2 and the gene for a novel protein identical to tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta Ywhaq, complete sequence Length = 147628 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aaaggaaaaaggagaaataa 69 |||||||||||||||||||| Sbjct: 136437 aaaggaaaaaggagaaataa 136456
>emb|BX323887.10| Zebrafish DNA sequence from clone CH211-274C22 in linkage group 13, complete sequence Length = 134841 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 |||| ||||||||||||||||||| Sbjct: 125321 gtgtgtgtgtgtgtagtttgtata 125298
>gb|AC154492.2| Mus musculus BAC clone RP24-107B10 from chromosome 17, complete sequence Length = 172605 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tcctgtcagaaggaaaacaaaact 103 ||||| |||||||||||||||||| Sbjct: 61433 tcctgacagaaggaaaacaaaact 61456
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ctgtcagaaggaaaacaaaa 101 |||||||||||||||||||| Sbjct: 68317 ctgtcagaaggaaaacaaaa 68298
>gb|AC090398.12| Homo sapiens chromosome 18, clone RP11-669I1, complete sequence Length = 133378 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gtgattgtaggaagcaatgc 352 |||||||||||||||||||| Sbjct: 49883 gtgattgtaggaagcaatgc 49902
>gb|AY282416.1| Homo sapiens Toll-interleukin 1 receptor (TIR) domain-containing adapter protein (TIRAP) gene, complete cds Length = 20684 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tttgtataaaaggaaaaagg 61 |||||||||||||||||||| Sbjct: 3100 tttgtataaaaggaaaaagg 3119
>gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216954 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaaggaaaaaggagaaata 68 |||||||||||||||||||| Sbjct: 95218 aaaaggaaaaaggagaaata 95237
>gb|AC134333.3| Mus musculus BAC clone RP24-140M19 from chromosome 10, complete sequence Length = 137079 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 |||| ||||||||||||||||||| Sbjct: 7963 gtgtctgtgtgtgtagtttgtata 7940
>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete sequence Length = 178904 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tatgtgtgtgtagtttgtat 48 |||||||||||||||||||| Sbjct: 42058 tatgtgtgtgtagtttgtat 42039
>dbj|AK051966.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230026C07 product:hypothetical protein, full insert sequence Length = 2756 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 ||||||||||||||||| |||||| Sbjct: 1714 gtgtatgtgtgtgtagtgtgtata 1691
>gb|AC156284.8| Mus musculus 6 BAC RP24-392D13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182146 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaaggaaaaaggagaaata 68 |||||||||||||||||||| Sbjct: 58467 aaaaggaaaaaggagaaata 58486
>emb|BX511165.4| Zebrafish DNA sequence from clone DKEY-22L14 in linkage group 7, complete sequence Length = 134966 Score = 40.1 bits (20), Expect = 8.0 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 30 atgtgtgtgtagtttgtataaaaggaaaaagg 61 |||||||||| |||||||||||| |||||||| Sbjct: 114094 atgtgtgtgt-gtttgtataaaaagaaaaagg 114124
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agagagtagaaaagagagag 522 |||||||||||||||||||| Sbjct: 15601465 agagagtagaaaagagagag 15601446
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gagatgcttggtagcacagg 211 |||||||||||||||||||| Sbjct: 12772513 gagatgcttggtagcacagg 12772532
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agagagtagaaaagagagag 522 |||||||||||||||||||| Sbjct: 88831 agagagtagaaaagagagag 88812
>gb|AC080018.14|AC080018 Mus musculus 3 BAC RP23-200E11 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 209643 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttg 45 |||||||||||||||||||| Sbjct: 111131 gtgtatgtgtgtgtagtttg 111112
>gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosome 10, complete sequence Length = 201867 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 cagagagtagaaaagagagagcag 525 ||||||| |||||||||||||||| Sbjct: 81564 cagagagaagaaaagagagagcag 81541
>gb|AC097506.3| Homo sapiens BAC clone RP11-366P6 from 2, complete sequence Length = 43657 Score = 40.1 bits (20), Expect = 8.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttgtataaaag 53 |||||||||||||| ||||||||||||| Sbjct: 29111 gtgtatgtgtgtgt-gtttgtataaaag 29137
>gb|AC007251.4| Homo sapiens BAC clone RP11-373G23 from 2, complete sequence Length = 180964 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 aaatggccattgggaatgca 575 |||||||||||||||||||| Sbjct: 80381 aaatggccattgggaatgca 80362
>emb|BX296551.4| Zebrafish DNA sequence from clone CH211-224L10 in linkage group 23, complete sequence Length = 180447 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tgtttgatttgccgtcccag 276 |||||||||||||||||||| Sbjct: 20232 tgtttgatttgccgtcccag 20251 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tgtttgatttgccgtcccag 276 |||||||||||||||||||| Sbjct: 17596 tgtttgatttgccgtcccag 17615
>gb|AY135690.1| Mus musculus argonaute 4 protein (Ago4) gene, complete cds Length = 92047 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttgtata 49 ||||||||||||||||| |||||| Sbjct: 5674 gtgtatgtgtgtgtagtgtgtata 5697
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gagatgcttggtagcacagg 211 |||||||||||||||||||| Sbjct: 80290 gagatgcttggtagcacagg 80309
>emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in linkage group 7, complete sequence Length = 226160 Score = 40.1 bits (20), Expect = 8.0 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 30 atgtgtgtgtagtttgtataaaaggaaaaagg 61 |||||||||| |||||||||||| |||||||| Sbjct: 104813 atgtgtgtgt-gtttgtataaaaagaaaaagg 104783
>emb|AL929242.16| Mouse DNA sequence from clone RP23-78D16 on chromosome 2, complete sequence Length = 217352 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 ttgtataaaaggaaaaaggagaaa 66 |||| ||||||||||||||||||| Sbjct: 54061 ttgtttaaaaggaaaaaggagaaa 54084
>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome Length = 791654 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 aaaagatgaagcaatttgta 423 |||||||||||||||||||| Sbjct: 208221 aaaagatgaagcaatttgta 208240
>gb|AC153855.4| Mus musculus 6 BAC RP23-175B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183070 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaaaggaaaaaggagaaata 68 |||||||||||||||||||| Sbjct: 47715 aaaaggaaaaaggagaaata 47734
>gb|AC104742.9| Mus musculus chromosome 5, clone RP24-334A12, complete sequence Length = 117378 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atgtgtgtgtagtttgtata 49 |||||||||||||||||||| Sbjct: 109086 atgtgtgtgtagtttgtata 109067
>gb|AF068872.1|AF068872 Glycine curvata glutamine synthetase gene, paralog 1, nuclear gene encoding chloroplast protein, partial cds Length = 1257 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaggaaaaaggagaaataag 70 |||||||||||||||||||| Sbjct: 641 aaggaaaaaggagaaataag 622
>gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, complete sequence Length = 169265 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 atcctgtcttcctctgtgat 337 |||||||||||||||||||| Sbjct: 83576 atcctgtcttcctctgtgat 83557
>dbj|AP001318.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-712L6, complete sequence Length = 159565 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tttgtataaaaggaaaaagg 61 |||||||||||||||||||| Sbjct: 54974 tttgtataaaaggaaaaagg 54993
>emb|AL844511.14| Mouse DNA sequence from clone RP23-244B6 on chromosome 2, complete sequence Length = 144077 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 tctcatcaagaatgaactcc 482 |||||||||||||||||||| Sbjct: 125865 tctcatcaagaatgaactcc 125846
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agagagtagaaaagagagag 522 |||||||||||||||||||| Sbjct: 15609706 agagagtagaaaagagagag 15609687
>emb|AL670236.9| Mouse DNA sequence from clone RP23-242K15 on chromosome 4, complete sequence Length = 232950 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 tcacccctgtcagagagtagaaaa 515 ||||| |||||||||||||||||| Sbjct: 51371 tcacctctgtcagagagtagaaaa 51348
>emb|AL833626.1|HSM804939 Homo sapiens mRNA; cDNA DKFZp686M1273 (from clone DKFZp686M1273) Length = 3365 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 taaaaggaaaaaggagaaat 67 |||||||||||||||||||| Sbjct: 1290 taaaaggaaaaaggagaaat 1271
>dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-215C1, complete sequences Length = 150724 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tatgtgtgtgtagtttgtat 48 |||||||||||||||||||| Sbjct: 148793 tatgtgtgtgtagtttgtat 148812
>emb|CR788250.6| Human DNA sequence from clone DAMC-146E17 on chromosome 6, complete sequence Length = 88203 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ataaaaggaaaaaggagaaa 66 |||||||||||||||||||| Sbjct: 62755 ataaaaggaaaaaggagaaa 62736
>dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-190J24, complete sequences Length = 172173 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tatgtgtgtgtagtttgtat 48 |||||||||||||||||||| Sbjct: 30564 tatgtgtgtgtagtttgtat 30583
>gb|BC042646.1| Mus musculus bromodomain adjacent to zinc finger domain, 2B, mRNA (cDNA clone IMAGE:5357055), complete cds Length = 1860 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 ttgtataaaaggaaaaaggagaaa 66 |||| ||||||||||||||||||| Sbjct: 586 ttgtttaaaaggaaaaaggagaaa 563
>gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complete sequence Length = 218313 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 cagagagtagaaaagagagagcag 525 ||||||| |||||||||||||||| Sbjct: 196219 cagagagaagaaaagagagagcag 196196
>gb|BC053917.1| Mus musculus bromodomain adjacent to zinc finger domain, 2B, mRNA (cDNA clone IMAGE:6306095), containing frame-shift errors Length = 3668 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 ttgtataaaaggaaaaaggagaaa 66 |||| ||||||||||||||||||| Sbjct: 2389 ttgtttaaaaggaaaaaggagaaa 2366
>gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome 17, complete sequence Length = 219714 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttgtata 49 ||||||||||||||||| |||||| Sbjct: 150712 gtgtatgtgtgtgtagtgtgtata 150735
>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete sequence Length = 213391 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 gtgtatgtgtgtgtagtttgtata 49 ||||||||||||||||| |||||| Sbjct: 112248 gtgtatgtgtgtgtagtgtgtata 112225
>emb|AL606745.11| Mouse DNA sequence from clone RP23-32L6 on chromosome 3, complete sequence Length = 192332 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gagatcacttcacaaaaatg 123 |||||||||||||||||||| Sbjct: 98228 gagatcacttcacaaaaatg 98209
>emb|AL731843.14| Mouse DNA sequence from clone RP23-300F6 on chromosome X, complete sequence Length = 226657 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tggctttcacaatctcatca 470 |||||||||||||||||||| Sbjct: 68773 tggctttcacaatctcatca 68792
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 337101 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaggaaaaaggagaaataag 70 |||||||||||||||||||| Sbjct: 330835 aaggaaaaaggagaaataag 330816
>emb|AL606832.4| Mouse DNA sequence from clone RP23-346G22 on chromosome 3, complete sequence Length = 157428 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gtgtatgtgtgtgtagtttg 45 |||||||||||||||||||| Sbjct: 83766 gtgtatgtgtgtgtagtttg 83785 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,746,429 Number of Sequences: 3902068 Number of extensions: 6746429 Number of successful extensions: 304211 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 303598 Number of HSP's gapped (non-prelim): 606 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)