ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20f20 |
|---|---|
| Clone Library Name | barley_pub |
>GP133_HUMAN (Q6QNK2) Probable G-protein coupled receptor 133 precursor| (G-protein coupled receptor PGR25) Length = 874 Score = 33.5 bits (75), Expect = 0.13 Identities = 23/89 (25%), Positives = 40/89 (44%) Frame = -2 Query: 383 SLVPTFTANPQIPPSAHRPLATMPLRQRKCI*HPIFILSYFYPCTIWRHLGSSFHQHLVP 204 SL T TA+P +P A+ P+ T +RK P ILSY ++ +P Sbjct: 260 SLFMTSTASPVMPTDAYHPIITNLTEERKTFQSPGVILSYLQNVSL-----------SLP 308 Query: 203 KKILFRYRFIKESSGFVQSTLKLIIQFGW 117 K L + + F+++ ++++ GW Sbjct: 309 SKSLSEQTALNLTKTFLKAVGEILLLPGW 337
>LSHB_BOVIN (P04651) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 30.8 bits (68), Expect = 0.83 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSY 8 L +E P +TF SIC +CP RV QRVC+Y Sbjct: 36 LAAEKEACPVCITFTTSICAGYCPSMKRVLPVILPPMPQRVCTY 79
>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) Length = 2254 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 374 PTFTANPQIPPSAHRPLATMPLRQRKCI 291 PT+ A P++PP PLA PLR++ I Sbjct: 1987 PTWGAIPKLPPPGRSPLAQRPLRRQAAI 2014
>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 30.8 bits (68), Expect = 0.83 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L +E P +TF SIC +CP RV Q VC+YR Sbjct: 36 LAAEKEACPICITFTTSICAGYCPSMVRVMPAALPAIPQPVCTYR 80
>LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 30.8 bits (68), Expect = 0.83 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L +E P +TF SIC +CP RV Q VC+YR Sbjct: 36 LAAEKEACPICITFTTSICAGYCPSMVRVMPAALPPIPQPVCTYR 80
>LSHB_RABIT (Q6IY74) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L E P +TF SIC +CP RV Q VC+YR Sbjct: 36 LAAENEACPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYR 80
>LSHB_PIG (P01232) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L E P +TF SIC +CP RV Q VC+YR Sbjct: 36 LAAENEACPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYR 80
>LSHB_RAT (P01230) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L E P +TF SIC +CP RV Q VC+YR Sbjct: 36 LAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYR 80
>LSHB_MOUSE (O09108) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L E P +TF SIC +CP RV Q VC+YR Sbjct: 36 LAAENEFCPVCITFTTSICAGYCPSMVRVLPAALPPVPQPVCTYR 80
>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) (Cav3.1c) (NBR13) Length = 2377 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 374 PTFTANPQIPPSAHRPLATMPLRQRKCI 291 PT+ P++PP PLA PLR++ I Sbjct: 2109 PTWGTIPKLPPPGRSPLAQRPLRRQAAI 2136
>LSHB_PANTA (Q9BDI9) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 142 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L E P VTF +IC +CP RV Q VC+YR Sbjct: 37 LAAENEACPVCVTFTTTICAGYCPSMMRVLPAALPPVPQPVCTYR 81
>LSHB_FELCA (O77805) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 143 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L E P VTF +IC +CP RV Q VC+YR Sbjct: 38 LAAENEACPVCVTFTTTICAGYCPSMMRVLPAALPPVPQPVCTYR 82
>ZAN_PIG (Q28983) Zonadhesin precursor| Length = 2476 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%) Frame = -3 Query: 124 LAGVLDESREVFPCTVTFVHSICKKFCPVGC---RVQRVCSYRC 2 LAG D + PC V+ C CP C V R C C Sbjct: 2244 LAGWRDHTHCALPCPANTVYQSCMTPCPASCATLAVPRACDGPC 2287
>LSHB_PHYCA (P25330) Lutropin beta chain (Luteinizing hormone beta subunit)| (LSH-beta) (LSH-B) (LH-B) Length = 118 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L + P +TF SIC +CP RV + VC+YR Sbjct: 16 LAAQNZACPVCITFTTSICAGYCPSMVRVLPAALPPVPZPVCTYR 60
>BNI1_YEAST (P41832) Protein BNI1 (Synthetic lethal 39)| Length = 1953 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +3 Query: 27 TRQPTGQNFLQIE*TNVTVQGN-TSLDSSRTP-AKLYYELQS*LYEAR*FFDEPITEENF 200 TRQ TGQ+ +++ QG+ T+L TP K+Y E+ S YE F++ + + N Sbjct: 139 TRQHTGQSHSA---SSLLSQGSLTNLSKFTTPDGKIYLEMPSDPYEVEVLFEDIMYKRNI 195 Query: 201 F 203 F Sbjct: 196 F 196
>RS13_THET8 (P80377) 30S ribosomal protein S13| Length = 125 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +1 Query: 220 WKLEPRCLQIVHG*K*ERMNIGCYMHLRCRKGMVAKGR 333 WKLE V M+IGCY LR R+G+ +G+ Sbjct: 63 WKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQ 100
>RS13_THET2 (P62655) 30S ribosomal protein S13| Length = 125 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +1 Query: 220 WKLEPRCLQIVHG*K*ERMNIGCYMHLRCRKGMVAKGR 333 WKLE V M+IGCY LR R+G+ +G+ Sbjct: 63 WKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQ 100
>LSHB_BALAC (P33088) Lutropin beta chain (Luteinizing hormone beta subunit)| (LSH-beta) (LSH-B) (LH-B) Length = 118 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = -3 Query: 97 EVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 + P +TF SIC +CP RV + VC+YR Sbjct: 21 ZACPVCITFTTSICAGYCPSMVRVLPAALPPVPZPVCTYR 60
>MNTH_RALSO (Q8XSF6) Probable manganese transport protein mntH| Length = 442 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -1 Query: 168 IIGLRTVNFEAHNTIWLAFLMSLGRCFLVQLHL 70 ++GL+ NF I L ++++G C+ V+L L Sbjct: 160 VLGLKGKNFRQLEAIVLGLILTIGLCYFVELAL 192
>LSHB_CERSI (O77835) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 9/44 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSY 8 L E P +TF SIC +CP RV Q VC+Y Sbjct: 36 LAAENEACPVCITFTTSICAGYCPSMVRVLPAALPPAPQPVCTY 79
>RS13_CORDI (Q6NJ66) 30S ribosomal protein S13| Length = 122 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 220 WKLEPRCLQIVHG*K*ERMNIGCYMHLRCRKGMVAKGR 333 WK+E + V ++ IGCY LR R+G+ +G+ Sbjct: 64 WKVEGDLRRQVQADIRRKIEIGCYQGLRHRRGLPVRGQ 101
>MRP3_ARATH (Q9LK64) Multidrug resistance-associated protein 3 (EC 3.6.3.44)| (Glutathione S-conjugate transporting ATPase 3) (ATP-energized glutathione S-conjugate pump 3) Length = 1514 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -2 Query: 227 SFHQHLVP---KKILFRYRFIKESSGFVQSTLKLIIQFGW 117 SF + ++P + L + F++ SGF+ S L L++ F W Sbjct: 18 SFSESILPLDSRSFLLKPLFLRWLSGFLHSVLLLVLFFSW 57
>LSHB_TRIVU (O46482) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 9/37 (24%) Frame = -3 Query: 88 PCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 P VTF +IC +CP RV Q VC+YR Sbjct: 45 PVCVTFTTTICAGYCPSMVRVLPAALPPGPQLVCTYR 81
>LSHB_MONDO (Q95J85) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 9/37 (24%) Frame = -3 Query: 88 PCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 P VTF +IC +CP RV Q VC+YR Sbjct: 45 PVCVTFTTTICAGYCPSMVRVLPAALPPGPQLVCTYR 81
>AHM2_ARATH (O64474) Putative cadmium/zinc-transporting ATPase 2 (EC 3.6.3.3)| (EC 3.6.3.5) Length = 1172 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 162 GLRTVNFEAHNTIWLAFLMSLGRCFLV 82 G+ + F H IW A L+ +G C LV Sbjct: 669 GILALAFAGHPLIWAAVLVDVGTCLLV 695
>RS13_TREPA (O83240) 30S ribosomal protein S13| Length = 121 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 274 MNIGCYMHLRCRKGMVAKGR 333 M+IGCY LR RKG+ +G+ Sbjct: 81 MDIGCYRGLRHRKGLPVRGQ 100
>LSHB_MACRU (O46483) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) (Fragment) Length = 138 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 9/37 (24%) Frame = -3 Query: 88 PCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 P VTF +IC +CP RV Q VC+YR Sbjct: 42 PVCVTFTTTICAGYCPSMVRVLPAALPPSPQLVCTYR 78
>RS13_MYCLE (Q9X7A1) 30S ribosomal protein S13| Length = 124 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +1 Query: 271 RMNIGCYMHLRCRKGMVAKGR 333 +M IGCY LR R+G+ +G+ Sbjct: 81 KMEIGCYQGLRHRRGLPVRGQ 101
>LSHB_AILFU (Q8HZR9) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 9/44 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSY 8 L E P VTF +IC +CP RV Q VC+Y Sbjct: 36 LAAENEACPVCVTFTTTICAGYCPSMVRVLPAILPPMPQPVCTY 79
>LSHB_PHOSU (Q9QYA9) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) (Fragment) Length = 128 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 9/44 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSY 8 L E P +TF SIC +CP RV Q VC+Y Sbjct: 36 LAAENEACPVCITFSTSICAGYCPSMVRVLPAALPPVPQPVCTY 79
>RS13_MESFL (Q6F1W9) 30S ribosomal protein S13| Length = 121 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 274 MNIGCYMHLRCRKGMVAKGR 333 M IGCY LR RKG+ +G+ Sbjct: 81 MEIGCYRGLRHRKGLPVRGQ 100
>LSHB_EQUAS (P19794) Lutropin/choriogonadotropin beta chain precursor| (LSH-B/CG-B) (Lutenizing hormone beta subunit) Length = 169 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Frame = -3 Query: 112 LDESREVFPCTVTFVHSICKKFCPVGCRV---------QRVCSYR 5 L +E P +TF SIC +C RV Q VC+YR Sbjct: 36 LAAEKEACPICITFTTSICAGYCRSMVRVMPAALPPIPQPVCTYR 80
>RS13_CORGL (Q8NSV6) 30S ribosomal protein S13| Length = 122 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 220 WKLEPRCLQIVHG*K*ERMNIGCYMHLRCRKGMVAKGR 333 WK+E + V ++ IGCY +R R+G+ +G+ Sbjct: 64 WKVEGDLRRQVQADIRRKIEIGCYQGIRHRRGLPVRGQ 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,225,874 Number of Sequences: 219361 Number of extensions: 1058699 Number of successful extensions: 2202 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2202 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
