>ref|XM_482576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 372  tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 431
            |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 1697 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 1638

                                                                       
Query: 432  ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 490
            |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 1637 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 1586



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 602  ttctgcacaatgaaagcgcccaatgcccagtcaactggca 641
            ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1565 ttctgcacaatgaaagcacccaatgcccagtcaacaggca 1526

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                            
Query: 372      tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 431
                |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 21186700 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 21186641

                                                                           
Query: 432      ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 490
                |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 21186640 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 21186589



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 602      ttctgcacaatgaaagcgcccaatgcccagtcaactggca 641
                ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 21186476 ttctgcacaatgaaagcacccaatgcccagtcaacaggca 21186437

>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                         
Query: 372   tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 431
             |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 12977 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 12918

                                                                        
Query: 432   ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 490
             |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 12917 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 12866



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 602   ttctgcacaatgaaagcgcccaatgcccagtcaactggca 641
             ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 12753 ttctgcacaatgaaagcacccaatgcccagtcaacaggca 12714

>dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J16, full
            insert sequence
          Length = 2052

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 372  tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 431
            |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 1697 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 1638

                                                                       
Query: 432  ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 490
            |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 1637 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 1586



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 602  ttctgcacaatgaaagcgcccaatgcccagtcaactggca 641
            ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1565 ttctgcacaatgaaagcacccaatgcccagtcaacaggca 1526

>gb|AY104515.1| Zea mays PCO140907 mRNA sequence
          Length = 706

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 603 tctgcacaatgaaagcgcccaatgcccagtcaactggca 641
           |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 191 tctgcacaatgaaagcacccaatgcccagtcaacaggca 153

>ref|XM_421378.1| PREDICTED: Gallus gallus similar to TNF receptor associated factor 3
            (CD40 receptor associated factor 1) (CRAF1) (CD40 binding
            protein) (CD40BP) (LMP1 associated protein) (LAP1)
            (CAP-1) (LOC423471), mRNA
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 172  cagctcagcagtgcagcatgt 192
            |||||||||||||||||||||
Sbjct: 1056 cagctcagcagtgcagcatgt 1076

>gb|AC142308.3| Pan troglodytes BAC clone RP43-135J9 from Y, complete sequence
          Length = 148521

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    ataattttgtacgcctgtctt 47
             |||||||||||||||||||||
Sbjct: 76233 ataattttgtacgcctgtctt 76253

>dbj|BS000594.1| Pan troglodytes chromosome Y clone:PTB-031N07, complete sequences
          Length = 88699

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    ataattttgtacgcctgtctt 47
             |||||||||||||||||||||
Sbjct: 66362 ataattttgtacgcctgtctt 66342

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 27       ataattttgtacgcctgtctt 47
                |||||||||||||||||||||
Sbjct: 15627672 ataattttgtacgcctgtctt 15627692

>emb|BX932940.2| Gallus gallus finished cDNA, clone ChEST36n15
          Length = 1397

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 cagctcagcagtgcagcatgt 192
           |||||||||||||||||||||
Sbjct: 557 cagctcagcagtgcagcatgt 577

>ref|XM_425700.1| PREDICTED: Gallus gallus similar to RIM4 gamma (LOC428142), mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ttcagctcagcagtgcagca 189
            ||||||||||||||||||||
Sbjct: 1127 ttcagctcagcagtgcagca 1108

>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   actgcagcagcccaagtcactgat 153
             |||||||||||||||||| |||||
Sbjct: 52829 actgcagcagcccaagtcgctgat 52806

>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    actgcagcagcccaagtcactgat 153
              |||||||||||||||| |||||||
Sbjct: 706148 actgcagcagcccaagccactgat 706125

>gb|AC092404.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-261D18, complete
              sequence
          Length = 225503

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    agagtattgagcaactatgc 121
              ||||||||||||||||||||
Sbjct: 214493 agagtattgagcaactatgc 214474

>gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete sequence
          Length = 206755

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    actgcagcagcccaagtcactgat 153
              |||||||||||||||| |||||||
Sbjct: 169332 actgcagcagcccaagccactgat 169309

>gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, complete sequence
          Length = 159512

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gcccaagtcactgattttac 158
             ||||||||||||||||||||
Sbjct: 70600 gcccaagtcactgattttac 70581

>gb|AC083809.21| Homo sapiens 12 BAC RP11-785D18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 136607

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   ggccaggaatatctacatat 340
             ||||||||||||||||||||
Sbjct: 54575 ggccaggaatatctacatat 54594

>dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-819M15, complete
             sequence
          Length = 165258

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   gcacaatgtaaatatgacaa 507
             ||||||||||||||||||||
Sbjct: 52229 gcacaatgtaaatatgacaa 52248

>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete
              sequence
          Length = 209915

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    cggtcttgttcagctcagca 181
              ||||||||||||||||||||
Sbjct: 207889 cggtcttgttcagctcagca 207908


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,686,108
Number of Sequences: 3902068
Number of extensions: 4686108
Number of successful extensions: 75776
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75686
Number of HSP's gapped (non-prelim): 90
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)