ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 365 1e-97
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 365 1e-97
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 365 1e-97
4dbj|AK100408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
5dbj|AK067797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
6emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 272 1e-69
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 272 1e-69
8emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chro... 44 0.55
9emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 44 0.55
10emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BA... 44 0.55
11gb|AE005686.1| Caulobacter crescentus CB15 section 12 of 359 of ... 44 0.55
12gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.55
13gb|AY940090.1| Delftia tsuruhatensis strain AD9 transposase (tnp... 42 2.2
14gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 42 2.2
15emb|AL662891.9| Mouse DNA sequence from clone RP23-20N14 on chro... 42 2.2
16dbj|AK133874.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 42 2.2
17dbj|AK162571.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.2
18gb|AY105409.1| Zea mays PCO095801 mRNA sequence 42 2.2
19dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.2
20dbj|D85415.2| Pseudomonas putida UCC22 plasmid pTDN1 genes for c... 42 2.2
21gb|AC166346.5| Mus musculus BAC clone RP24-83P13 from chromosome... 40 8.7
22gb|AC166832.2| Mus musculus BAC clone RP23-220N17 from chromosom... 40 8.7
23gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence 40 8.7
24emb|AL121895.26|HSA234K24 Human DNA sequence from clone RP11-234... 40 8.7
25emb|AL669907.6| Mouse DNA sequence from clone RP23-245A5 on chro... 40 8.7
26gb|AC078903.11| Homo sapiens chromosome 17, clone RP11-1084K4, c... 40 8.7
27gb|DQ397604.1| Cenarchaeum symbiosum clone C08G10, complete sequ... 40 8.7
28gb|DQ397599.1| Cenarchaeum symbiosum clone C06H12, complete sequ... 40 8.7
29emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on ch... 40 8.7
30emb|BX927077.10| Zebrafish DNA sequence from clone DKEY-119M17 i... 40 8.7
31gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.7

>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score =  365 bits (184), Expect = 1e-97
 Identities = 349/404 (86%)
 Strand = Plus / Minus

                                                                         
Query: 222   tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
             ||||||||||||| |||||||||||||| || || |||||  |||| |||||||||||||
Sbjct: 31178 tgagccagtggcaatcctggaacgcgcacctgcccgaggcttgcagcgtctcgccgacgt 31119

                                                                         
Query: 282   cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
             | |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 31118 ctcggggctccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 31059

                                                                         
Query: 342   tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
             |||||||| |||     || |||||||||| || |||||| ||||| ||||| |||||||
Sbjct: 31058 tgagccgccggatgttggacccgtcgatgtcgacggtgaagatctcgccgtatggctggt 30999

                                                                         
Query: 402   agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
             | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 30998 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 30939

                                                                         
Query: 462   tgcgcttggagtccgggctgaaccaagggtggtttgtcctgccgccgtccgcgctgtgca 521
              || ||||||||||||||||||||| |||||||| |||| ||||| | |  |||||||||
Sbjct: 30938 ggctcttggagtccgggctgaaccatgggtggttggtccggccgctgccgccgctgtgca 30879

                                                                         
Query: 522   ccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccgcctc 581
             ||||||  |||||||||||||  || |||||||||||||||||||||||||||||||  |
Sbjct: 30878 ccacccgccgcagcccggtgccattggggtgcaccatgtagatggcgaagctgccgctcc 30819

                                                         
Query: 582   ccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
             |||||   || |||||||||||||||||||||||||||||||||
Sbjct: 30818 ccggggcatggcggtcggaggcgaaggcgatccactcgccgtcg 30775



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  365 bits (184), Expect = 1e-97
 Identities = 349/404 (86%)
 Strand = Plus / Minus

                                                                            
Query: 222      tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
                ||||||||||||| |||||||||||||| || || |||||  |||| |||||||||||||
Sbjct: 35030277 tgagccagtggcaatcctggaacgcgcacctgcccgaggcttgcagcgtctcgccgacgt 35030218

                                                                            
Query: 282      cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
                | |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 35030217 ctcggggctccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 35030158

                                                                            
Query: 342      tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
                |||||||| |||     || |||||||||| || |||||| ||||| ||||| |||||||
Sbjct: 35030157 tgagccgccggatgttggacccgtcgatgtcgacggtgaagatctcgccgtatggctggt 35030098

                                                                            
Query: 402      agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
                | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 35030097 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 35030038

                                                                            
Query: 462      tgcgcttggagtccgggctgaaccaagggtggtttgtcctgccgccgtccgcgctgtgca 521
                 || ||||||||||||||||||||| |||||||| |||| ||||| | |  |||||||||
Sbjct: 35030037 ggctcttggagtccgggctgaaccatgggtggttggtccggccgctgccgccgctgtgca 35029978

                                                                            
Query: 522      ccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccgcctc 581
                ||||||  |||||||||||||  || |||||||||||||||||||||||||||||||  |
Sbjct: 35029977 ccacccgccgcagcccggtgccattggggtgcaccatgtagatggcgaagctgccgctcc 35029918

                                                            
Query: 582      ccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
                |||||   || |||||||||||||||||||||||||||||||||
Sbjct: 35029917 ccggggcatggcggtcggaggcgaaggcgatccactcgccgtcg 35029874



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  365 bits (184), Expect = 1e-97
 Identities = 349/404 (86%)
 Strand = Plus / Minus

                                                                            
Query: 222      tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
                ||||||||||||| |||||||||||||| || || |||||  |||| |||||||||||||
Sbjct: 35120349 tgagccagtggcaatcctggaacgcgcacctgcccgaggcttgcagcgtctcgccgacgt 35120290

                                                                            
Query: 282      cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
                | |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 35120289 ctcggggctccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 35120230

                                                                            
Query: 342      tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
                |||||||| |||     || |||||||||| || |||||| ||||| ||||| |||||||
Sbjct: 35120229 tgagccgccggatgttggacccgtcgatgtcgacggtgaagatctcgccgtatggctggt 35120170

                                                                            
Query: 402      agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
                | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 35120169 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 35120110

                                                                            
Query: 462      tgcgcttggagtccgggctgaaccaagggtggtttgtcctgccgccgtccgcgctgtgca 521
                 || ||||||||||||||||||||| |||||||| |||| ||||| | |  |||||||||
Sbjct: 35120109 ggctcttggagtccgggctgaaccatgggtggttggtccggccgctgccgccgctgtgca 35120050

                                                                            
Query: 522      ccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccgcctc 581
                ||||||  |||||||||||||  || |||||||||||||||||||||||||||||||  |
Sbjct: 35120049 ccacccgccgcagcccggtgccattggggtgcaccatgtagatggcgaagctgccgctcc 35119990

                                                            
Query: 582      ccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
                |||||   || |||||||||||||||||||||||||||||||||
Sbjct: 35119989 ccggggcatggcggtcggaggcgaaggcgatccactcgccgtcg 35119946



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>dbj|AK100408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087F22, full
            insert sequence
          Length = 2287

 Score =  365 bits (184), Expect = 1e-97
 Identities = 349/404 (86%)
 Strand = Plus / Minus

                                                                        
Query: 222  tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
            ||||||||||||| |||||||||||||| || || |||||  |||| |||||||||||||
Sbjct: 2044 tgagccagtggcaatcctggaacgcgcacctgcccgaggcttgcagcgtctcgccgacgt 1985

                                                                        
Query: 282  cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
            | |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1984 ctcggggctccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 1925

                                                                        
Query: 342  tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
            |||||||| |||     || |||||||||| || |||||| ||||| ||||| |||||||
Sbjct: 1924 tgagccgccggatgttggacccgtcgatgtcgacggtgaagatctcgccgtatggctggt 1865

                                                                        
Query: 402  agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
            | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 1864 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 1805

                                                                        
Query: 462  tgcgcttggagtccgggctgaaccaagggtggtttgtcctgccgccgtccgcgctgtgca 521
             || ||||||||||||||||||||| |||||||| |||| ||||| | |  |||||||||
Sbjct: 1804 ggctcttggagtccgggctgaaccatgggtggttggtccggccgctgccgccgctgtgca 1745

                                                                        
Query: 522  ccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccgcctc 581
            ||||||  |||||||||||||  || |||||||||||||||||||||||||||||||  |
Sbjct: 1744 ccacccgccgcagcccggtgccattggggtgcaccatgtagatggcgaagctgccgctcc 1685

                                                        
Query: 582  ccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
            |||||   || |||||||||||||||||||||||||||||||||
Sbjct: 1684 ccggggcatggcggtcggaggcgaaggcgatccactcgccgtcg 1641



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>dbj|AK067797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D11, full
            insert sequence
          Length = 2307

 Score =  365 bits (184), Expect = 1e-97
 Identities = 349/404 (86%)
 Strand = Plus / Minus

                                                                        
Query: 222  tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
            ||||||||||||| |||||||||||||| || || |||||  |||| |||||||||||||
Sbjct: 2071 tgagccagtggcaatcctggaacgcgcacctgcccgaggcttgcagcgtctcgccgacgt 2012

                                                                        
Query: 282  cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
            | |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 ctcggggctccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 1952

                                                                        
Query: 342  tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
            |||||||| |||     || |||||||||| || |||||| ||||| ||||| |||||||
Sbjct: 1951 tgagccgccggatgttggacccgtcgatgtcgacggtgaagatctcgccgtatggctggt 1892

                                                                        
Query: 402  agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
            | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 1891 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 1832

                                                                        
Query: 462  tgcgcttggagtccgggctgaaccaagggtggtttgtcctgccgccgtccgcgctgtgca 521
             || ||||||||||||||||||||| |||||||| |||| ||||| | |  |||||||||
Sbjct: 1831 ggctcttggagtccgggctgaaccatgggtggttggtccggccgctgccgccgctgtgca 1772

                                                                        
Query: 522  ccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccgcctc 581
            ||||||  |||||||||||||  || |||||||||||||||||||||||||||||||  |
Sbjct: 1771 ccacccgccgcagcccggtgccattggggtgcaccatgtagatggcgaagctgccgctcc 1712

                                                        
Query: 582  ccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
            |||||   || |||||||||||||||||||||||||||||||||
Sbjct: 1711 ccggggcatggcggtcggaggcgaaggcgatccactcgccgtcg 1668



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>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
              complete sequence
          Length = 185021

 Score =  272 bits (137), Expect = 1e-69
 Identities = 341/408 (83%), Gaps = 7/408 (1%)
 Strand = Plus / Plus

                                                                          
Query: 222    tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
              ||||||||||||| |||||||||||||| || ||||||||  |||| ||||| || ||||
Sbjct: 122517 tgagccagtggcaatcctggaacgcgcacctgcctgaggcttgcagcgtctcacctacgt 122576

                                                                          
Query: 282    cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
              ||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122577 cccgggggtccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 122636

                                                                          
Query: 342    tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
              |||||||| |||     || |||||||||| || |||| | ||||| ||||| |||||||
Sbjct: 122637 tgagccgccggatgttggacccgtcgatgtcgacggtgtagatctcgccgtatggctggt 122696

                                                                          
Query: 402    agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
              | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 122697 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 122756

                                                                          
Query: 462    tgcgcttggagtccgggctgaaccaagggtggtt----tgtcctgccgccgtccgcgctg 517
               || ||||||||| |  |||||||| ||||||||     |||| |||||||||  |||||
Sbjct: 122757 ggctcttggagtctgaactgaaccatgggtggttggtcggtccggccgccgtcgccgctg 122816

                                                                          
Query: 518    tgcaccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccg 577
              ||||||||||  |||| ||||||||  || |||||||||||   ||||||||||||||||
Sbjct: 122817 tgcaccacccgccgcaacccggtgccattggggtgcaccat---gatggcgaagctgccg 122873

                                                              
Query: 578    cctcccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
              |  ||||||   || ||||||||||||||||||||||||||| |||||
Sbjct: 122874 ctccccggggcatggcggtcggaggcgaaggcgatccactcgtcgtcg 122921



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  272 bits (137), Expect = 1e-69
 Identities = 341/408 (83%), Gaps = 7/408 (1%)
 Strand = Plus / Plus

                                                                            
Query: 222      tgagccagtggcagtcctggaacgcgcagctccctgaggcgcgcagggtctcgccgacgt 281
                ||||||||||||| |||||||||||||| || ||||||||  |||| ||||| || ||||
Sbjct: 11799739 tgagccagtggcaatcctggaacgcgcacctgcctgaggcttgcagcgtctcacctacgt 11799798

                                                                            
Query: 282      cccggggctcgaggaagtgcggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 341
                ||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11799799 cccgggggtccaggaagtatggcgtccacgacggcgtgccgtcctcgaacgagttgtgcg 11799858

                                                                            
Query: 342      tgagccgctggagccccgagccgtcgatgttgatggtgaatatctccccgtagggctggt 401
                |||||||| |||     || |||||||||| || |||| | ||||| ||||| |||||||
Sbjct: 11799859 tgagccgccggatgttggacccgtcgatgtcgacggtgtagatctcgccgtatggctggt 11799918

                                                                            
Query: 402      agtggtgcgggttcgaaatgggctcggcggaaacggcggcgaggtccgaggtgaacacca 461
                | ||||| ||||| || |  ||||||||||| |||||||||  ||| |||||||| || |
Sbjct: 11799919 aatggtgagggttggagaccggctcggcggagacggcggcgtagtcggaggtgaagacga 11799978

                                                                            
Query: 462      tgcgcttggagtccgggctgaaccaagggtggtt----tgtcctgccgccgtccgcgctg 517
                 || ||||||||| |  |||||||| ||||||||     |||| |||||||||  |||||
Sbjct: 11799979 ggctcttggagtctgaactgaaccatgggtggttggtcggtccggccgccgtcgccgctg 11800038

                                                                            
Query: 518      tgcaccaccctacgcagcccggtgctgttcgggtgcaccatgtagatggcgaagctgccg 577
                ||||||||||  |||| ||||||||  || |||||||||||   ||||||||||||||||
Sbjct: 11800039 tgcaccacccgccgcaacccggtgccattggggtgcaccat---gatggcgaagctgccg 11800095

                                                                
Query: 578      cctcccgggttgtgccggtcggaggcgaaggcgatccactcgccgtcg 625
                |  ||||||   || ||||||||||||||||||||||||||| |||||
Sbjct: 11800096 ctccccggggcatggcggtcggaggcgaaggcgatccactcgtcgtcg 11800143



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>emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chromosome 17, complete
              sequence
          Length = 135681

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 496    tgtcctgccgccgtccgcgctg 517
              ||||||||||||||||||||||
Sbjct: 128170 tgtcctgccgccgtccgcgctg 128149



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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 52     atacagatacagtactaattaa 73
              ||||||||||||||||||||||
Sbjct: 166801 atacagatacagtactaattaa 166780



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>emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project)
          Length = 93695

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    atacagatacagtactaattaa 73
             ||||||||||||||||||||||
Sbjct: 28884 atacagatacagtactaattaa 28863



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>gb|AE005686.1| Caulobacter crescentus CB15 section 12 of 359 of the complete genome
          Length = 11992

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 592  ccggtcggaggcgaaggcgatccactcgccgtcg 625
            ||||||||||| ||||||||||| || |||||||
Sbjct: 1415 ccggtcggaggtgaaggcgatccgcttgccgtcg 1382



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 604     gaaggcgatccactcgccgtcg 625
               ||||||||||||||||||||||
Sbjct: 4253456 gaaggcgatccactcgccgtcg 4253477



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>gb|AY940090.1| Delftia tsuruhatensis strain AD9 transposase (tnpA-L1) gene, partial
            cds; tad gene cluster, complete sequence; transcriptional
            regulator (orfX), hydrolase/acyltransferase (orfY), and
            muconate cycloisomerase (orfZ) genes, complete cds; and
            transposase (tnpA-L2) gene, partial cds
          Length = 24681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 449  gaggtgaacaccatgcgcttg 469
            |||||||||||||||||||||
Sbjct: 6263 gaggtgaacaccatgcgcttg 6283



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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 506     ccgtccgcgctgtgcaccacc 526
               |||||||||||||||||||||
Sbjct: 2646150 ccgtccgcgctgtgcaccacc 2646170



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>emb|AL662891.9| Mouse DNA sequence from clone RP23-20N14 on chromosome 11 Contains the
              Psme4 gene for proteasome (prosome, macropain) activator
              subunit 4, the Gpr75 gene for G protein-coupled receptor
              75, a novel pseudogene, a PDZ and LIM domain 1 (elfin)
              (Pdlim1) pseudogene, two novel genes, the 5' end of the
              Asb3 gene for ankyrin repeat and SOCS box-containing
              protein 3, a methyl-CpG binding domain protein 2
              interacting protein (Mbdin) pseudogene and a CpG island,
              complete sequence
          Length = 244971

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     atttatactatacagcaggca 116
              |||||||||||||||||||||
Sbjct: 169439 atttatactatacagcaggca 169459



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>dbj|AK133874.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730472D08 product:hypothetical
            Mannose-6-phosphate receptor, binding containing protein,
            full insert sequence
          Length = 2514

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   atttatactatacagcaggca 116
            |||||||||||||||||||||
Sbjct: 2255 atttatactatacagcaggca 2235



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>dbj|AK162571.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630017I02 product:hypothetical
            protein, full insert sequence
          Length = 2271

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   atttatactatacagcaggca 116
            |||||||||||||||||||||
Sbjct: 1023 atttatactatacagcaggca 1003



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>gb|AY105409.1| Zea mays PCO095801 mRNA sequence
          Length = 741

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 274 gccgacgtcccggggctcgag 294
           |||||||||||||||||||||
Sbjct: 508 gccgacgtcccggggctcgag 528



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>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
             complete sequence
          Length = 185320

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 374   atggtgaatatctccccgtagggctggtagtggtgcgggtt 414
             ||||||||||| || || ||||||||||||  |||||||||
Sbjct: 98765 atggtgaatatttcaccatagggctggtaggcgtgcgggtt 98805



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>dbj|D85415.2| Pseudomonas putida UCC22 plasmid pTDN1 genes for conversion of
            aniline to catechol, aniline degradation lower-pathway
            gene cluster, regulatory protein and transposase, partial
            and complete cds
          Length = 25404

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 449  gaggtgaacaccatgcgcttg 469
            |||||||||||||||||||||
Sbjct: 6254 gaggtgaacaccatgcgcttg 6274



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>gb|AC166346.5| Mus musculus BAC clone RP24-83P13 from chromosome 16, complete sequence
          Length = 199678

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    gccagtggcagtcctggaac 244
              ||||||||||||||||||||
Sbjct: 129951 gccagtggcagtcctggaac 129932



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>gb|AC166832.2| Mus musculus BAC clone RP23-220N17 from chromosome 16, complete sequence
          Length = 172644

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    gccagtggcagtcctggaac 244
              ||||||||||||||||||||
Sbjct: 160688 gccagtggcagtcctggaac 160669



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>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence
          Length = 202386

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   catgctctccttggtatcat 134
             ||||||||||||||||||||
Sbjct: 76963 catgctctccttggtatcat 76982



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>emb|AL121895.26|HSA234K24 Human DNA sequence from clone RP11-234K24 on chromosome 20 Contains a
             novel gene, the 3' end of the EPB41L1 gene for the
             erythrocyte membrane protein band 4.1-like protein, the
             C20orf4 gene for chromosome 20 open reading frame 4 and a
             CpG island, complete sequence
          Length = 153192

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   tgctgagccagtggcagtcctgga 242
             ||||||||||||||||| ||||||
Sbjct: 11583 tgctgagccagtggcagacctgga 11606



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>emb|AL669907.6| Mouse DNA sequence from clone RP23-245A5 on chromosome 11 Contains part
             of a crumbs-like protein precursor pseudogene, complete
             sequence
          Length = 156193

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ttattcctgagcaatacaga 58
             ||||||||||||||||||||
Sbjct: 23635 ttattcctgagcaatacaga 23616



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>gb|AC078903.11| Homo sapiens chromosome 17, clone RP11-1084K4, complete sequence
          Length = 95359

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   gccgctggagccccgagccg 364
             ||||||||||||||||||||
Sbjct: 51653 gccgctggagccccgagccg 51672



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>gb|DQ397604.1| Cenarchaeum symbiosum clone C08G10, complete sequence
          Length = 37232

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   gtttgtcctgccgccgtccg 512
             ||||||||||||||||||||
Sbjct: 34754 gtttgtcctgccgccgtccg 34735



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>gb|DQ397599.1| Cenarchaeum symbiosum clone C06H12, complete sequence
          Length = 37698

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   gtttgtcctgccgccgtccg 512
             ||||||||||||||||||||
Sbjct: 19998 gtttgtcctgccgccgtccg 20017



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>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete
             sequence
          Length = 230114

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   catgctctccttggtatcat 134
             ||||||||||||||||||||
Sbjct: 60806 catgctctccttggtatcat 60825



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>emb|BX927077.10| Zebrafish DNA sequence from clone DKEY-119M17 in linkage group 19,
             complete sequence
          Length = 239130

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    gcaaacatttatactataca 109
             ||||||||||||||||||||
Sbjct: 10095 gcaaacatttatactataca 10114



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     cgcgcagggtctcgccgacg 280
               ||||||||||||||||||||
Sbjct: 2401633 cgcgcagggtctcgccgacg 2401652


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,306,012
Number of Sequences: 3902068
Number of extensions: 4306012
Number of successful extensions: 162818
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162490
Number of HSP's gapped (non-prelim): 324
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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