| Clone Name | rbaal7e12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464397.1| Oryza sativa (japonica cultivar-group), mRNA Length = 722 Score = 280 bits (141), Expect = 5e-72 Identities = 201/221 (90%) Strand = Plus / Minus Query: 316 tcgtcttctgggaacctacgatcatccatcatacgcctgcggcggttgcggcggccggcc 375 |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct: 481 tcgtcttctgggaacctaggctcctccatcatacgcctgcggcggttgcggcggccggcc 422 Query: 376 tcgcgggccttgcgaatcttcttgtccttggtgttctcgtgccggcggcggcgcttgatc 435 |||||||||||||| | || |||||| || |||||| |||||||||||||||||| Sbjct: 421 tcgcgggccttgcgcttgcgctcgtccttcttgctctcgtagcggcggcggcgcttgatc 362 Query: 436 tcctggagcaggccggccttcatcacctcccgccggaagcgccggaagatggagtcctcc 495 |||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||| Sbjct: 361 tcctggagcacgccggccctcatcacctcccgccggaaccgccggaagatggactcctcc 302 Query: 496 ccctcgttctcgtccaccacgatctgcacgttgtagccctt 536 ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 301 ccctcgttctcgtccaccacgatctgcacattgtacccctt 261
>dbj|AK120425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095G03, full insert sequence Length = 722 Score = 280 bits (141), Expect = 5e-72 Identities = 201/221 (90%) Strand = Plus / Minus Query: 316 tcgtcttctgggaacctacgatcatccatcatacgcctgcggcggttgcggcggccggcc 375 |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct: 481 tcgtcttctgggaacctaggctcctccatcatacgcctgcggcggttgcggcggccggcc 422 Query: 376 tcgcgggccttgcgaatcttcttgtccttggtgttctcgtgccggcggcggcgcttgatc 435 |||||||||||||| | || |||||| || |||||| |||||||||||||||||| Sbjct: 421 tcgcgggccttgcgcttgcgctcgtccttcttgctctcgtagcggcggcggcgcttgatc 362 Query: 436 tcctggagcaggccggccttcatcacctcccgccggaagcgccggaagatggagtcctcc 495 |||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||| Sbjct: 361 tcctggagcacgccggccctcatcacctcccgccggaaccgccggaagatggactcctcc 302 Query: 496 ccctcgttctcgtccaccacgatctgcacgttgtagccctt 536 ||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 301 ccctcgttctcgtccaccacgatctgcacattgtacccctt 261
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 234 bits (118), Expect = 3e-58 Identities = 169/186 (90%) Strand = Plus / Plus Query: 351 cctgcggcggttgcggcggccggcctcgcgggccttgcgaatcttcttgtccttggtgtt 410 ||||||||||||||||||||||||||||||||||||||| | || |||||| || | Sbjct: 4937352 cctgcggcggttgcggcggccggcctcgcgggccttgcgcttgcgctcgtccttcttgct 4937411 Query: 411 ctcgtgccggcggcggcgcttgatctcctggagcaggccggccttcatcacctcccgccg 470 ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 4937412 ctcgtagcggcggcggcgcttgatctcctggagcacgccggccctcatcacctcccgccg 4937471 Query: 471 gaagcgccggaagatggagtcctccccctcgttctcgtccaccacgatctgcacgttgta 530 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4937472 gaaccgccggaagatggactcctccccctcgttctcgtccaccacgatctgcacattgta 4937531 Query: 531 gccctt 536 ||||| Sbjct: 4937532 cccctt 4937537 Score = 89.7 bits (45), Expect = 1e-14 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 412 tcgtgccggcggcggcgcttgatctcctggagcaggccggccttcatcacctcccgccgg 471 |||| |||||||||||| ||||||||||| ||| ||||||| ||||||||||| ||||| Sbjct: 30358879 tcgtaccggcggcggcgtttgatctcctg-agcgcgccggccgtcatcacctcctgccgg 30358821 Query: 472 aagcgccggaagatggagtcctccc 496 || |||||||||||||| ||||||| Sbjct: 30358820 aaccgccggaagatggactcctccc 30358796 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 316 tcgtcttctgggaacctacgatcatccatcatacgcctgc 355 |||||||||||||||||| | || |||||||||||||||| Sbjct: 4936768 tcgtcttctgggaacctaggctcctccatcatacgcctgc 4936807 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tgcggcggccggcctcgcgg 381 |||||||||||||||||||| Sbjct: 30358922 tgcggcggccggcctcgcgg 30358903
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 234 bits (118), Expect = 3e-58 Identities = 169/186 (90%) Strand = Plus / Plus Query: 351 cctgcggcggttgcggcggccggcctcgcgggccttgcgaatcttcttgtccttggtgtt 410 ||||||||||||||||||||||||||||||||||||||| | || |||||| || | Sbjct: 8478 cctgcggcggttgcggcggccggcctcgcgggccttgcgcttgcgctcgtccttcttgct 8537 Query: 411 ctcgtgccggcggcggcgcttgatctcctggagcaggccggccttcatcacctcccgccg 470 ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 8538 ctcgtagcggcggcggcgcttgatctcctggagcacgccggccctcatcacctcccgccg 8597 Query: 471 gaagcgccggaagatggagtcctccccctcgttctcgtccaccacgatctgcacgttgta 530 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 8598 gaaccgccggaagatggactcctccccctcgttctcgtccaccacgatctgcacattgta 8657 Query: 531 gccctt 536 ||||| Sbjct: 8658 cccctt 8663 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 316 tcgtcttctgggaacctacgatcatccatcatacgcctgc 355 |||||||||||||||||| | || |||||||||||||||| Sbjct: 7894 tcgtcttctgggaacctaggctcctccatcatacgcctgc 7933
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 234 bits (118), Expect = 3e-58 Identities = 169/186 (90%) Strand = Plus / Plus Query: 351 cctgcggcggttgcggcggccggcctcgcgggccttgcgaatcttcttgtccttggtgtt 410 ||||||||||||||||||||||||||||||||||||||| | || |||||| || | Sbjct: 82091 cctgcggcggttgcggcggccggcctcgcgggccttgcgcttgcgctcgtccttcttgct 82150 Query: 411 ctcgtgccggcggcggcgcttgatctcctggagcaggccggccttcatcacctcccgccg 470 ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 82151 ctcgtagcggcggcggcgcttgatctcctggagcacgccggccctcatcacctcccgccg 82210 Query: 471 gaagcgccggaagatggagtcctccccctcgttctcgtccaccacgatctgcacgttgta 530 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 82211 gaaccgccggaagatggactcctccccctcgttctcgtccaccacgatctgcacattgta 82270 Query: 531 gccctt 536 ||||| Sbjct: 82271 cccctt 82276 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 316 tcgtcttctgggaacctacgatcatccatcatacgcctgc 355 |||||||||||||||||| | || |||||||||||||||| Sbjct: 81507 tcgtcttctgggaacctaggctcctccatcatacgcctgc 81546
>gb|BT017715.1| Zea mays clone EL01N0446G10.c mRNA sequence Length = 632 Score = 218 bits (110), Expect = 2e-53 Identities = 197/226 (87%) Strand = Plus / Minus Query: 319 tcttctgggaacctacgatcatccatcatacgcctgcggcggttgcggcggccggcctcg 378 |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 376 tcttctgggaacctcggctcatccatcatacgcctgcggcggttgcggcgcccggcctcg 317 Query: 379 cgggccttgcgaatcttcttgtccttggtgttctcgtgccggcggcggcgcttgatctcc 438 || |||||||| |||||| |||| | || |||| | || || ||||||||||||||| Sbjct: 316 cgcgccttgcgcttcttctcgtccgtcttgctctcatacctccgacggcgcttgatctcc 257 Query: 439 tggagcaggccggccttcatcacctcccgccggaagcgccggaagatggagtcctccccc 498 || |||| ||||||| ||||||| |||||||||| |||||||||||||| ||||||||| Sbjct: 256 tgcagcacgccggcccgcatcaccccccgccggaaccgccggaagatggactcctccccc 197 Query: 499 tcgttctcgtccaccacgatctgcacgttgtagcccttagcggcca 544 |||||||||||||||| |||| |||| ||||| ||||| ||||||| Sbjct: 196 tcgttctcgtccaccaggatccgcacattgtaccccttggcggcca 151
>ref|XM_467595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1551 Score = 89.7 bits (45), Expect = 1e-14 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 412 tcgtgccggcggcggcgcttgatctcctggagcaggccggccttcatcacctcccgccgg 471 |||| |||||||||||| ||||||||||| ||| ||||||| ||||||||||| ||||| Sbjct: 143 tcgtaccggcggcggcgtttgatctcctg-agcgcgccggccgtcatcacctcctgccgg 85 Query: 472 aagcgccggaagatggagtcctccc 496 || |||||||||||||| ||||||| Sbjct: 84 aaccgccggaagatggactcctccc 60 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tgcggcggccggcctcgcgg 381 |||||||||||||||||||| Sbjct: 186 tgcggcggccggcctcgcgg 167
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 89.7 bits (45), Expect = 1e-14 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 412 tcgtgccggcggcggcgcttgatctcctggagcaggccggccttcatcacctcccgccgg 471 |||| |||||||||||| ||||||||||| ||| ||||||| ||||||||||| ||||| Sbjct: 39739 tcgtaccggcggcggcgtttgatctcctg-agcgcgccggccgtcatcacctcctgccgg 39681 Query: 472 aagcgccggaagatggagtcctccc 496 || |||||||||||||| ||||||| Sbjct: 39680 aaccgccggaagatggactcctccc 39656 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tgcggcggccggcctcgcgg 381 |||||||||||||||||||| Sbjct: 39782 tgcggcggccggcctcgcgg 39763
>ref|NM_181804.1| Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor gamma (PKIG), transcript variant 3, mRNA Length = 1353 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 525 ctcacagcctctgagtctccct 504
>ref|NM_181805.1| Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor gamma (PKIG), transcript variant 1, mRNA Length = 1458 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 630 ctcacagcctctgagtctccct 609
>ref|NM_007066.3| Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor gamma (PKIG), transcript variant 2, mRNA Length = 1206 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 378 ctcacagcctctgagtctccct 357
>gb|BC104256.1| Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor gamma, transcript variant 2, mRNA (cDNA clone MGC:126458 IMAGE:40035945), complete cds Length = 694 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 366 ctcacagcctctgagtctccct 345
>gb|BC104257.1| Homo sapiens protein kinase (cAMP-dependent, catalytic) inhibitor gamma, transcript variant 2, mRNA (cDNA clone MGC:126459 IMAGE:40035946), complete cds Length = 694 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 366 ctcacagcctctgagtctccct 345
>emb|Z97053.2|HS179M20 Human DNA sequence from clone RP1-179M20 on chromosome 20 Contains the 3' end of the C20orf121 gene for chromosome 20 open reading frame 121, the TDE1 gene for tumour differentially expressed 1, the PKIG gene for protein kinase (cAMP-dependent, catalytic) inhibitor gamma, the 3' end of the ADA gene for adenosine deaminase and two CpG islands, complete sequence Length = 147708 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 131563 ctcacagcctctgagtctccct 131542
>gb|AF115966.1| Homo sapiens protein kinase inhibitor gamma mRNA, complete cds Length = 1185 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 354 ctcacagcctctgagtctccct 333
>emb|CR623057.1| full-length cDNA clone CS0DI056YO14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1124 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 324 ctcacagcctctgagtctccct 303
>gb|AF182032.1|AF182032 Homo sapiens protein kinase inhibitor gamma (PKIG) mRNA, complete cds Length = 1073 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 246 ctcacagcctctgagtctccct 225
>dbj|AB019517.1| Homo sapiens PKIG mRNA for protein kinase inhibitor gamma, complete cds Length = 923 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ctcacagcctctgagtctccct 316 |||||||||||||||||||||| Sbjct: 105 ctcacagcctctgagtctccct 84
>ref|XM_630607.1| Dictyostelium discoideum hypothetical protein (DDB0189002), partial mRNA Length = 2436 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 taacatttggtaaaattaaat 117 ||||||||||||||||||||| Sbjct: 134 taacatttggtaaaattaaat 154
>gb|AF489515.1| Streptomyces thermovulgaris malate synthase (aceB) gene, complete cds Length = 1626 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 449 cggccttcatcacctcccgccggaa 473 ||||||||||| ||||||||||||| Sbjct: 1007 cggccttcatcccctcccgccggaa 1031
>gb|AC124391.3| Mus musculus BAC clone RP24-439L13 from chromosome 18, complete sequence Length = 153492 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 gaatcttcttgtccttggtgt 409 ||||||||||||||||||||| Sbjct: 48258 gaatcttcttgtccttggtgt 48238
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 gttctcgtccaccacgatctg 521 ||||||||||||||||||||| Sbjct: 5144835 gttctcgtccaccacgatctg 5144815
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 432 gatctcctggagcaggccggccttc 456 ||||||||||||||||| ||||||| Sbjct: 2410730 gatctcctggagcaggcgggccttc 2410754
>gb|AC093529.2| Homo sapiens chromosome 5 clone RP11-29K14, complete sequence Length = 109306 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 aaaagtaagtaaaaaatagaa 65 ||||||||||||||||||||| Sbjct: 13239 aaaagtaagtaaaaaatagaa 13259
>gb|AC094109.2| Homo sapiens chromosome 5 clone RP11-62E10, complete sequence Length = 160039 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 aaaagtaagtaaaaaatagaa 65 ||||||||||||||||||||| Sbjct: 107769 aaaagtaagtaaaaaatagaa 107789
>gb|AC068323.8|AC068323 Homo sapiens chromosome 5 clone RP11-62E10, complete sequence Length = 160039 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 aaaagtaagtaaaaaatagaa 65 ||||||||||||||||||||| Sbjct: 52271 aaaagtaagtaaaaaatagaa 52251
>emb|AM181475.1| Microbacterium aerolatum partial gyrB gene for DNA gyrase subunit B, type strain DSM 14217 Length = 1101 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 361 ttgcggcggccggcctcgcgggccttgcg 389 ||||||||| ||| ||||||||||||||| Sbjct: 840 ttgcggcgggcggtctcgcgggccttgcg 812
>gb|AC122183.4| Mus musculus BAC clone RP23-14P23 from 3, complete sequence Length = 210223 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 37 aaatctagaaaagtaagtaaaaaatagaa 65 |||| ||||||||||||||||||| |||| Sbjct: 74889 aaatttagaaaagtaagtaaaaaaaagaa 74917
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 411 ctcgtgccggcggcggcgcttgatc 435 ||||||||||||||||||| ||||| Sbjct: 699285 ctcgtgccggcggcggcgcatgatc 699261
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 attgaagtggaaagagcgac 143 |||||||||||||||||||| Sbjct: 80226 attgaagtggaaagagcgac 80207
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcggcggccggcctcgcggg 382 |||||||||||||||||||| Sbjct: 80719 gcggcggccggcctcgcggg 80700
>gb|AY242833.1| Bosea minatitlanensis strain AMX51 RNA polymerase beta subunit (rpoB) gene, complete cds Length = 4122 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ctcctggagcaggccggcct 454 |||||||||||||||||||| Sbjct: 3643 ctcctggagcaggccggcct 3662
>ref|XM_367034.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03110.4) partial mRNA Length = 918 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 ctcgtccaccacgatctgcacgtt 527 ||||||||| |||||||||||||| Sbjct: 513 ctcgtccacgacgatctgcacgtt 490
>ref|XM_567595.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK00250) partial mRNA Length = 5022 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 attgaagtggaaagagcgac 143 |||||||||||||||||||| Sbjct: 2398 attgaagtggaaagagcgac 2417
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 gagcaggccggccttcatca 460 |||||||||||||||||||| Sbjct: 1921245 gagcaggccggccttcatca 1921226
>emb|AL450428.6| Human DNA sequence from clone RP11-264J11 on chromosome 9, complete sequence Length = 84808 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccatgcaggcaaaagaaaag 184 |||||||||||||||||||| Sbjct: 63541 ccatgcaggcaaaagaaaag 63522
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 acgcctgcggcggttgcggcggcc 371 ||||| |||||||||||||||||| Sbjct: 2304586 acgccggcggcggttgcggcggcc 2304609
>emb|AL355805.20| Human DNA sequence from clone RP11-29L10 on chromosome Xq21.1-21.33 Contains a ribosomal protein L6 (RPL6) pseudogene, complete sequence Length = 76507 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 aaatctagaaaagtaagtaaaaaa 60 ||||||||||||||||||| |||| Sbjct: 50735 aaatctagaaaagtaagtacaaaa 50758
>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2 Contains the 5' end of a novel gene, complete sequence Length = 94056 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 acatttggtaaaattaaata 118 |||||||||||||||||||| Sbjct: 68464 acatttggtaaaattaaata 68483
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gcggccggcctcgcgggcct 385 |||||||||||||||||||| Sbjct: 175641 gcggccggcctcgcgggcct 175622
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gcggccggcctcgcgggcct 385 |||||||||||||||||||| Sbjct: 87634 gcggccggcctcgcgggcct 87615
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gcggccggcctcgcgggcct 385 |||||||||||||||||||| Sbjct: 9183 gcggccggcctcgcgggcct 9164
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 tgcggcggccggcctcgcgg 381 |||||||||||||||||||| Sbjct: 90561 tgcggcggccggcctcgcgg 90580
>emb|AJ561198.1|NSP561198 Actinomadura sp. ATCC 39727 gene cluster for biosynthesis of glycopeptide antibiotic A40926, strain ATCC 39727 Length = 89153 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 ggttgcggcggccggcctcgcggg 382 |||||||||||||| ||||||||| Sbjct: 1501 ggttgcggcggccgacctcgcggg 1524
>gb|DQ408491.1| Sphaeropthalma uro voucher EMUS 00044 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1795 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gataaatatatgctttgcat 23 |||||||||||||||||||| Sbjct: 484 gataaatatatgctttgcat 503
>gb|DQ408490.1| Sphaeropthalma amphion voucher EMUS 00036 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1789 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gataaatatatgctttgcat 23 |||||||||||||||||||| Sbjct: 481 gataaatatatgctttgcat 500
>gb|DQ408489.1| Sphaeropthalma amphion voucher EMUS 00035 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1786 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gataaatatatgctttgcat 23 |||||||||||||||||||| Sbjct: 481 gataaatatatgctttgcat 500
>emb|BX323065.6| Zebrafish DNA sequence from clone DKEYP-68F6 in linkage group 10, complete sequence Length = 132064 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgataaatatatgctttgcatt 24 ||||||||||||||| |||||||| Sbjct: 17032 tttgataaatatatggtttgcatt 17055
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcggcggccggcctcgcggg 382 |||||||||||||||||||| Sbjct: 18814829 gcggcggccggcctcgcggg 18814810
>gb|AY011374.1| Manis pentadactyla amyloid beta precursor protein (APP) gene, partial cds Length = 636 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agtaaaaaatagaacagaag 71 |||||||||||||||||||| Sbjct: 154 agtaaaaaatagaacagaag 135
>emb|BX088527.5| Zebrafish DNA sequence from clone DKEY-200F8 in linkage group 1, complete sequence Length = 148904 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 atgcaggcaaaagaaaaggt 186 |||||||||||||||||||| Sbjct: 22298 atgcaggcaaaagaaaaggt 22317
>emb|BX005073.7| Zebrafish DNA sequence from clone CH211-129N18, complete sequence Length = 185849 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ttgaagtggaaagagcgact 144 |||||||||||||||||||| Sbjct: 103340 ttgaagtggaaagagcgact 103321
>dbj|AK069995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037B09, full insert sequence Length = 1917 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcggcggccggcctcgcggg 382 |||||||||||||||||||| Sbjct: 1521 gcggcggccggcctcgcggg 1540
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 agtaaaaaatagaacagaagtatc 75 |||||||||||||| ||||||||| Sbjct: 3593382 agtaaaaaatagaatagaagtatc 3593359
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgataaatatatgctttgcatt 24 ||||||||||||||| |||||||| Sbjct: 99823 tttgataaatatatggtttgcatt 99846 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tttgataaatatatgctttgcatt 24 ||||||||||||||| |||||||| Sbjct: 96013 tttgataaatatatggtttgcatt 95990
>emb|AL929374.7| Zebrafish DNA sequence from clone CH211-89M7 in linkage group 5, complete sequence Length = 179521 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 atgcaggcaaaagaaaaggt 186 |||||||||||||||||||| Sbjct: 54472 atgcaggcaaaagaaaaggt 54491
>emb|AL021447.3|CEF19B2 Caenorhabditis elegans Cosmid F19B2, complete sequence Length = 38950 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atgcaggcaaaagaaaaggt 186 |||||||||||||||||||| Sbjct: 12815 atgcaggcaaaagaaaaggt 12796
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcggcggccggcctcgcggg 382 |||||||||||||||||||| Sbjct: 18975525 gcggcggccggcctcgcggg 18975506
>gb|U90027.1|SSU90027 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 242 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 110 ctagataagtaagtaaaaaataga 133
>gb|U90026.1|SSU90026 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 242 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 110 ctagataagtaagtaaaaaataga 133
>gb|U90025.1|SSU90025 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 241 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 109 ctagataagtaagtaaaaaataga 132
>gb|U90023.1|SSU90023 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 241 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 109 ctagataagtaagtaaaaaataga 132
>gb|U90022.1|SSU90022 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 242 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 110 ctagataagtaagtaaaaaataga 133
>gb|U39814.1|SSU39814 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 333 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 201 ctagataagtaagtaaaaaataga 224
>gb|U39813.1|SSU39813 Staphylococcus simulans 16S-23S ribosomal RNA spacer region Length = 241 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ctagaaaagtaagtaaaaaataga 64 ||||| |||||||||||||||||| Sbjct: 109 ctagataagtaagtaaaaaataga 132
>emb|CR381686.16| Zebrafish DNA sequence from clone CH211-179L5 in linkage group 24, complete sequence Length = 137127 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tttgataaatatatgctttgcatt 24 ||||||||||||||| |||||||| Sbjct: 99455 tttgataaatatatggtttgcatt 99478 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tttgataaatatatgctttgcatt 24 ||||||||||||||| |||||||| Sbjct: 95726 tttgataaatatatggtttgcatt 95703
>emb|AL606487.15| Mouse DNA sequence from clone RP23-342L24 on chromosome 11, complete sequence Length = 136540 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ggcgcttgatctcctggagc 444 |||||||||||||||||||| Sbjct: 119510 ggcgcttgatctcctggagc 119529 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,933,229 Number of Sequences: 3902068 Number of extensions: 5933229 Number of successful extensions: 122970 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122138 Number of HSP's gapped (non-prelim): 828 length of query: 611 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 588 effective length of database: 17,143,297,704 effective search space: 10080259049952 effective search space used: 10080259049952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)