ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GTR10_HUMAN (O95528) Solute carrier family 2, facilitated glucos... 32 2.4
2HRPK_PSESY (P41501) Pathogenicity locus protein hrpK 30 9.0
3TRF5_YEAST (P48561) Poly(A) RNA polymerase protein 1 (EC 2.7.7.-... 30 9.0
4FAAH_PIG (Q9TUI8) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleam... 30 9.0

>GTR10_HUMAN (O95528) Solute carrier family 2, facilitated glucose transporter|
           member 10 (Glucose transporter type 10)
          Length = 541

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 411 LPHTNEQQRQMLLDFAQRTTPASSFNPPGASGGHITSESVPG 286
           +P TNE QR+ +L  A++T P      P A      S ++PG
Sbjct: 356 IPRTNEDQREPILSTAKKTKPHPRSGDPSAPPRLALSSALPG 397



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>HRPK_PSESY (P41501) Pathogenicity locus protein hrpK|
          Length = 641

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 498 RMQASGS-VIGSEASQATSREMPVE--LLRASLPHTNEQQRQMLLDFAQRTTPASSFNPP 328
           R+ +S S  +GS  +Q TS E+  E  L +ASL  +     Q  + F Q     SSF+  
Sbjct: 2   RISSSPSPALGSIVNQPTSGELAAETPLAKASLTQSGAGGGQAFVQFGQANDSPSSFSGT 61

Query: 327 GASGGHITS 301
             SG  + S
Sbjct: 62  EQSGSSLMS 70



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>TRF5_YEAST (P48561) Poly(A) RNA polymerase protein 1 (EC 2.7.7.-)|
           (Topoisomerase 1-related protein TRF5)
          Length = 625

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = -1

Query: 648 DRATELLTDQHAVSSYTSSNRALWQASFDAFFGLLTKYCLSKYESILQMFRMQASGSV-- 475
           +R++ LLTD+H VS  TS      +++ +  +  +  +C SK   I      +    V  
Sbjct: 127 ERSSFLLTDEHEVSKLTSQQSLNTESACNVEYPWIRNHCHSKQRRIADWLTSEIKDFVHY 186

Query: 474 IGSEASQATSREMPVELLRASL 409
           I    ++   R   ++ LR ++
Sbjct: 187 ISPSKNEIKCRNRTIDKLRRAV 208



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>FAAH_PIG (Q9TUI8) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleamide|
           hydrolase) (Anandamide amidohydrolase)
          Length = 579

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
 Frame = -1

Query: 666 IIKSVLDRATELLTDQHAVSSYTSSNRA-LWQASFDAFFGLLTKYCLSKYESILQMFRMQ 490
           ++ S L +A E+    + V++Y +   A L QA      GLL    +S    + + F  +
Sbjct: 96  VLFSYLQKAWEVNRGTNCVTTYLADCEAQLCQAPGQ---GLLYGVPVS----LKECFSCK 148

Query: 489 ASGSVIGSEASQATSRE-----MPVELLRASLP--HTNEQQRQMLLD-----FAQRTTPA 346
              S +G   +Q T  E     + V  L+ ++P  HTN  Q     D     F Q T P 
Sbjct: 149 GHDSTLGLSRNQGTPAECDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTTNPW 208

Query: 345 SSFNPPGASGG 313
            S   PG S G
Sbjct: 209 MSSKSPGGSSG 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,756,640
Number of Sequences: 219361
Number of extensions: 1978545
Number of successful extensions: 4412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4411
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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