ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ILVC_PYRAB (Q9UZ09) Ketol-acid reductoisomerase (EC 1.1.1.86) (A... 31 2.7
2PLSB_CAEEL (Q22949) Probable glycerol-3-phosphate acyltransferas... 30 6.1
3VGNM_CPMV (P03599) Genome polyprotein M (RNA2 polyprotein) [Cont... 30 8.0

>ILVC_PYRAB (Q9UZ09) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 332

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 31/124 (25%), Positives = 54/124 (43%)
 Frame = +3

Query: 168 INIPQILQKEGSREHMPNSSRVSTSREFQHPAALTDKQLVGLRPENYFSLQRHAHIQSTE 347
           I IP ++Q +  REH+    R   +  F H   +  KQ+V   P  Y  +   A     +
Sbjct: 82  ILIPDLVQPKVYREHIEPYLREGQALGFSHGFNIHYKQIV---PPEYVDVIMVAPKSPGK 138

Query: 348 FIGALLLLRRREMCSVGH*KEVQIPSLIGALSNGSGNNRDISV*ITSAISCTIACRAQLF 527
            +      R + +   G      +P+L+    + +GN +D+++ +  AI CT   RA + 
Sbjct: 139 RV------REKYLEGFG------VPALVAVYQDYTGNAKDLALAMAKAIGCT---RAGVI 183

Query: 528 VTQF 539
            T F
Sbjct: 184 ETTF 187



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>PLSB_CAEEL (Q22949) Probable glycerol-3-phosphate acyltransferase,|
           mitochondrial precursor (EC 2.3.1.15) (GPAT)
          Length = 718

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 145 CKHISYAFYEGFKRL*EFSFVCKIPGRVSEDSQTVGLLIVXISIAVDH 2
           CK  SY  Y+ F+RL +   VCK    V  +++  G+ +V + +   H
Sbjct: 123 CKCCSYVLYKVFRRLMDKLLVCKEEMEVLYEAEQTGIPMVYLPLHRSH 170



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>VGNM_CPMV (P03599) Genome polyprotein M (RNA2 polyprotein) [Contains:|
           Movement protein (MP); Large coat protein (LCP) (Coat
           protein VP37); Small coat protein, N-terminus part (SCP)
           (Coat protein VP23); Small coat protein, C-terminus
           part]
          Length = 1046

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = -2

Query: 376 LLSRSSAPMNSVDCI*ACRCSEK*FSGRK-PTSCLSVRAAGC*NSRDVETLDEFGICSLL 200
           L +RS+AP+N+V    +CRC       RK    C S     C +S D   +     C  L
Sbjct: 13  LWTRSAAPLNNVYLSYSCRCG---LGKRKLAGGCCSAPYITCYDSADFRRVQYLYFC--L 67

Query: 199 PSFCRIWGMLI---DW**VSFCKHISYAFYEGFKR 104
             +C ++  L+   DW    F K  S  F   F R
Sbjct: 68  TRYCCLYFFLLLLADW----FYKKSSIFFETEFSR 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,674,107
Number of Sequences: 219361
Number of extensions: 2003702
Number of successful extensions: 5433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5265
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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