| Clone Name | rbaal20e03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | ILVC_PYRAB (Q9UZ09) Ketol-acid reductoisomerase (EC 1.1.1.86) (A... | 31 | 2.7 | 2 | PLSB_CAEEL (Q22949) Probable glycerol-3-phosphate acyltransferas... | 30 | 6.1 | 3 | VGNM_CPMV (P03599) Genome polyprotein M (RNA2 polyprotein) [Cont... | 30 | 8.0 |
|---|
>ILVC_PYRAB (Q9UZ09) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 31.2 bits (69), Expect = 2.7 Identities = 31/124 (25%), Positives = 54/124 (43%) Frame = +3 Query: 168 INIPQILQKEGSREHMPNSSRVSTSREFQHPAALTDKQLVGLRPENYFSLQRHAHIQSTE 347 I IP ++Q + REH+ R + F H + KQ+V P Y + A + Sbjct: 82 ILIPDLVQPKVYREHIEPYLREGQALGFSHGFNIHYKQIV---PPEYVDVIMVAPKSPGK 138 Query: 348 FIGALLLLRRREMCSVGH*KEVQIPSLIGALSNGSGNNRDISV*ITSAISCTIACRAQLF 527 + R + + G +P+L+ + +GN +D+++ + AI CT RA + Sbjct: 139 RV------REKYLEGFG------VPALVAVYQDYTGNAKDLALAMAKAIGCT---RAGVI 183 Query: 528 VTQF 539 T F Sbjct: 184 ETTF 187
>PLSB_CAEEL (Q22949) Probable glycerol-3-phosphate acyltransferase,| mitochondrial precursor (EC 2.3.1.15) (GPAT) Length = 718 Score = 30.0 bits (66), Expect = 6.1 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 145 CKHISYAFYEGFKRL*EFSFVCKIPGRVSEDSQTVGLLIVXISIAVDH 2 CK SY Y+ F+RL + VCK V +++ G+ +V + + H Sbjct: 123 CKCCSYVLYKVFRRLMDKLLVCKEEMEVLYEAEQTGIPMVYLPLHRSH 170
>VGNM_CPMV (P03599) Genome polyprotein M (RNA2 polyprotein) [Contains:| Movement protein (MP); Large coat protein (LCP) (Coat protein VP37); Small coat protein, N-terminus part (SCP) (Coat protein VP23); Small coat protein, C-terminus part] Length = 1046 Score = 29.6 bits (65), Expect = 8.0 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Frame = -2 Query: 376 LLSRSSAPMNSVDCI*ACRCSEK*FSGRK-PTSCLSVRAAGC*NSRDVETLDEFGICSLL 200 L +RS+AP+N+V +CRC RK C S C +S D + C L Sbjct: 13 LWTRSAAPLNNVYLSYSCRCG---LGKRKLAGGCCSAPYITCYDSADFRRVQYLYFC--L 67 Query: 199 PSFCRIWGMLI---DW**VSFCKHISYAFYEGFKR 104 +C ++ L+ DW F K S F F R Sbjct: 68 TRYCCLYFFLLLLADW----FYKKSSIFFETEFSR 98 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,674,107 Number of Sequences: 219361 Number of extensions: 2003702 Number of successful extensions: 5433 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 4933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5265 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)