ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20d24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC164537.3| Mus musculus chromosome 7, clone RP23-68N11, complete sequence Length = 153418 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 273 caaacctctttccaacttcctcc 295 ||||||||||||||||||||||| Sbjct: 19836 caaacctctttccaacttcctcc 19814
>emb|AL023754.1|HS272L16 Human DNA sequence from clone RP1-272L16 on chromosome 1q32.1-32.3 Contains a novel gene, the CAMK1G gene for calcium/calmodulin-dependent protein kinase IG and the 3' end of the LAMB3 gene for laminin beta 3, complete sequence Length = 157875 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 324 caggaacaggaccaaaagcaaaa 346 ||||||||||||||||||||||| Sbjct: 80639 caggaacaggaccaaaagcaaaa 80661
>emb|AL450336.7| Human DNA sequence from clone RP11-24C14 on chromosome 6, complete sequence Length = 125507 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 aacagaccaaaccaaaccacaa 470 |||||||||||||||||||||| Sbjct: 56226 aacagaccaaaccaaaccacaa 56247
>gb|AC160116.2| Mus musculus BAC clone RP23-456L15 from chromosome 9, complete sequence Length = 182041 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 442 tgaatagaacagaccaaaccaaacca 467 ||||||||||||| |||||||||||| Sbjct: 87383 tgaatagaacagaacaaaccaaacca 87408
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence Length = 171426 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 ccaaaagcaaaaaacaacaga 355 ||||||||||||||||||||| Sbjct: 117257 ccaaaagcaaaaaacaacaga 117277
>gb|AC168883.3| Mus musculus 10 BAC RP23-406F5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 171839 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acgcaaacaacacaagcacat 77 ||||||||||||||||||||| Sbjct: 116444 acgcaaacaacacaagcacat 116464
>gb|AC096082.6| Rattus norvegicus 13 BAC CH230-11O17 (Children's Hospital Oakland Research Institute) complete sequence Length = 209228 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 443 gaatagaacagaccaaaccaaacca 467 |||||||||| |||||||||||||| Sbjct: 195480 gaatagaacaaaccaaaccaaacca 195456
>emb|AL451137.8| Human DNA sequence from clone RP11-18A15 on chromosome 9 Contains a CpG island, complete sequence Length = 162837 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 aatagaacagaccaaaccaaa 464 ||||||||||||||||||||| Sbjct: 109645 aatagaacagaccaaaccaaa 109625
>emb|AL031772.6|HS225E12 Human DNA sequence from clone RP1-225E12 on chromosome 6q24 Contains the gene for hHDC for homolog of Drosophila headcase (LOC51696) and part of a novel gene, complete sequence Length = 126464 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 caaaagcaaaaaacaacagaa 356 ||||||||||||||||||||| Sbjct: 124635 caaaagcaaaaaacaacagaa 124615
>gb|AC158621.9| Mus musculus 10 BAC RP23-294J10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 172764 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acgcaaacaacacaagcacat 77 ||||||||||||||||||||| Sbjct: 39646 acgcaaacaacacaagcacat 39666
>emb|Y18986.1|HPY18986 Helicobacter pylori hopZ gene, strain 5060d(A) Length = 2098 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 556 atgaatgcaaacaaactgctg 576 ||||||||||||||||||||| Sbjct: 612 atgaatgcaaacaaactgctg 632
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence Length = 172337 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 ccaaaagcaaaaaacaacaga 355 ||||||||||||||||||||| Sbjct: 170430 ccaaaagcaaaaaacaacaga 170410
>tpe|BN000431.1| TPA: TPA_inf: Drosophila pseudoobscura mod(mdg4) gene for modifier of mdg4, exons 1-5 Length = 27000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 tgaaatgaaactaaccaaaag 117 ||||||||||||||||||||| Sbjct: 8867 tgaaatgaaactaaccaaaag 8847 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,621,468 Number of Sequences: 3902068 Number of extensions: 7621468 Number of successful extensions: 191268 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 191182 Number of HSP's gapped (non-prelim): 86 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
