ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRD1_HORVU (Q5EFU4) Magnesium-protoporphyrin IX monomethyl ester... 82 4e-16
2CRD1_GOSHI (Q6SJV8) Magnesium-protoporphyrin IX monomethyl ester... 69 4e-12
3CRD1_EUPES (Q945B7) Magnesium-protoporphyrin IX monomethyl ester... 65 4e-11
4CRD1_ARATH (Q9M591) Magnesium-protoporphyrin IX monomethyl ester... 61 9e-10
5ACSF_PORPU (P51277) Magnesium-protoporphyrin IX monomethyl ester... 34 0.12
6ACSF1_ANASP (Q8YX57) Magnesium-protoporphyrin IX monomethyl este... 30 2.3
7PT1_BUCAI (Q9WXI6) Phosphoenolpyruvate-protein phosphotransferas... 29 2.9
8CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (S... 29 2.9
9KCNG1_HUMAN (Q9UIX4) Potassium voltage-gated channel subfamily G... 29 3.9
10DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 7... 28 8.6

>CRD1_HORVU (Q5EFU4) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase) (Protein Xantha-l)
          Length = 417

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -3

Query: 201 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 76
           ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV
Sbjct: 365 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 406



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>CRD1_GOSHI (Q6SJV8) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase)
          Length = 405

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 30/42 (71%), Positives = 39/42 (92%)
 Frame = -3

Query: 201 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 76
           +++GE++D+PLVKNLKR+PLIA L SE++A YLMPPIESGSV
Sbjct: 353 LAVGETSDIPLVKNLKRIPLIAALASELLATYLMPPIESGSV 394



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>CRD1_EUPES (Q945B7) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase)
          Length = 405

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = -3

Query: 198 SIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 76
           ++GE+ D  +VKNLKRVPLIA LVSEI+AAYLMPPIESGSV
Sbjct: 354 AVGETEDNSVVKNLKRVPLIAALVSEILAAYLMPPIESGSV 394



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>CRD1_ARATH (Q9M591) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase) (Copper response defect 1 protein)
           (Dicarboxylate diiron protein) (AtZIP
          Length = 409

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 26/42 (61%), Positives = 35/42 (83%)
 Frame = -3

Query: 201 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 76
           ++IGE++D   +K LKR+PL+  L SEI+AAYLMPP+ESGSV
Sbjct: 357 LAIGETDDASFIKTLKRIPLVTSLASEILAAYLMPPVESGSV 398



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>ACSF_PORPU (P51277) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl
           ester oxidative cyclase)
          Length = 349

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 201 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 76
           I I +    PLVK   + PL   L+  +I  YL+ PI+S +V
Sbjct: 303 IDIDKKGSQPLVKTFMKAPLYMSLILNLIKIYLIKPIDSQAV 344



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>ACSF1_ANASP (Q8YX57) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase 1 (EC 1.14.13.81) (Mg-protoporphyrin IX
           monomethyl ester oxidative cyclase 1)
          Length = 351

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 195 IGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIES 85
           I  S+    VK ++++PLIA +V  ++  YL+ PI++
Sbjct: 307 IERSSQPKFVKLIRKLPLIAAIVWNLLMVYLIKPIDT 343



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>PT1_BUCAI (Q9WXI6) Phosphoenolpyruvate-protein phosphotransferase (EC|
           2.7.3.9) (Phosphotransferase system, enzyme I)
          Length = 571

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 189 ESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVILPNLAQACLLICR 34
           ++N++P  KN+K   +I    S IIA YL+  ++  S+   +L Q  L + R
Sbjct: 414 KNNNIPFDKNIKIGIMIETPASAIIAEYLIKEVDFFSIGTNDLTQYTLAVDR 465



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>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier|
           family 7 member 3) (Cationic amino acid transporter y+)
          Length = 618

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = -3

Query: 177 LPLVKNLKRVPLIAQLVSEIIAAY---------LMPPIESGSVILPNLAQACLLICR 34
           L  V ++  +P++A LVS +IAA+         L+  +  G+++  +L   C+LI R
Sbjct: 373 LAKVHSVTHIPIVATLVSGVIAAFMAFLFELTDLVDLMSIGTLLAHSLVSICVLILR 429



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>KCNG1_HUMAN (Q9UIX4) Potassium voltage-gated channel subfamily G member 1|
           (Voltage-gated potassium channel subunit Kv6.1) (kH2)
          Length = 513

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 199 FYRRVQRLAPGEEPEEG 149
           FYRR QRL P +EP +G
Sbjct: 39  FYRRAQRLRPQDEPRQG 55



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>DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 638

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 201 ISIGESNDLPLVKNLKRVPLIAQLVSE 121
           I IG+ ND+ LV    R+PL+ +LV+E
Sbjct: 329 IDIGKINDVILVGGQTRMPLVQKLVTE 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,206,911
Number of Sequences: 219361
Number of extensions: 421615
Number of successful extensions: 1254
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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