ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
2dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
3dbj|AK102887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
4dbj|AK063822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
5ref|NM_190624.1| Oryza sativa (japonica cultivar-group), predic... 58 1e-05
6emb|BX051171.1|CNS09BNB Single read from an extremity of a full-... 40 2.4
7ref|XM_309440.2| Anopheles gambiae str. PEST ENSANGP00000011175 ... 40 2.4
8gb|M98537.1|HUMPDS01 Human prostaglandin D2 synthase gene, promo... 40 2.4
9dbj|AP006123.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 2.4
10emb|AL627073.15| Mouse DNA sequence from clone RP23-234E14 on ch... 40 2.4
11gb|AC147474.2| Mus musculus BAC clone RP23-425D11 from chromosom... 38 9.5
12gb|AC004691.1| Homo sapiens PAC clone RP4-740D2 from 7, complete... 38 9.5
13gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome... 38 9.5
14gb|AC125222.4| Mus musculus BAC clone RP23-83G5 from 8, complete... 38 9.5
15emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on ch... 38 9.5
16emb|AL451134.8| Human DNA sequence from clone RP11-59J4 on chrom... 38 9.5
17gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete s... 38 9.5
18dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 9.5
19gb|U60571.1|RNCAII1 Rattus norvegicus carbonic anhydrase II gene... 38 9.5
20dbj|AP002535.1| Homo sapiens genomic DNA, chromosome 1q22-q23, C... 38 9.5
21dbj|AB045364.1| Homo sapiens genomic DNA, chromosome 1q22-q23, c... 38 9.5

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 116      atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175
                |||||| |||||||| |||||||||||||||||||| ||| || || ||  || ||||||
Sbjct: 36633643 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 36633584

                    
Query: 176      tgta 179
                ||||
Sbjct: 36633583 tgta 36633580



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>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0529H11
          Length = 165969

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 116    atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175
              |||||| |||||||| |||||||||||||||||||| ||| || || ||  || ||||||
Sbjct: 106909 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 106850

                  
Query: 176    tgta 179
              ||||
Sbjct: 106849 tgta 106846



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>dbj|AK102887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112K22, full
           insert sequence
          Length = 928

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 116 atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175
           |||||| |||||||| |||||||||||||||||||| ||| || || ||  || ||||||
Sbjct: 760 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 701

               
Query: 176 tgta 179
           ||||
Sbjct: 700 tgta 697



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>dbj|AK063822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A04, full
           insert sequence
          Length = 923

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 116 atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175
           |||||| |||||||| |||||||||||||||||||| ||| || || ||  || ||||||
Sbjct: 755 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 696

               
Query: 176 tgta 179
           ||||
Sbjct: 695 tgta 692



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>ref|NM_190624.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 651

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 117 tcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggtt 176
           ||||| |||||||| |||||||||||||||||||| ||| || || ||  || |||||||
Sbjct: 651 tcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggtt 592

              
Query: 177 gta 179
           |||
Sbjct: 591 gta 589



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>emb|BX051171.1|CNS09BNB Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC28BC06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 739

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  tagtagtagcacacgtacgg 64
           ||||||||||||||||||||
Sbjct: 417 tagtagtagcacacgtacgg 436



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>ref|XM_309440.2| Anopheles gambiae str. PEST ENSANGP00000011175
           (ENSANGG00000008686), partial mRNA
          Length = 1690

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  tagtagtagcacacgtacgg 64
           ||||||||||||||||||||
Sbjct: 929 tagtagtagcacacgtacgg 910



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>gb|M98537.1|HUMPDS01 Human prostaglandin D2 synthase gene, promoter and exon 1
          Length = 2992

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   ggtgggggtggccgggtggc 105
            ||||||||||||||||||||
Sbjct: 1532 ggtgggggtggccgggtggc 1513



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>dbj|AP006123.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT41E18, TM0207,
             complete sequence
          Length = 115290

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tacgtacaatctaatgaaat 45
             ||||||||||||||||||||
Sbjct: 10491 tacgtacaatctaatgaaat 10510



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>emb|AL627073.15| Mouse DNA sequence from clone RP23-234E14 on chromosome 4, complete
             sequence
          Length = 137991

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    agctgcatacatacacatag 85
             ||||||||||||||||||||
Sbjct: 43581 agctgcatacatacacatag 43562



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>gb|AC147474.2| Mus musculus BAC clone RP23-425D11 from chromosome 19, complete
             sequence
          Length = 195273

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    ctgcatacatacacatagg 86
             |||||||||||||||||||
Sbjct: 36299 ctgcatacatacacatagg 36317



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>gb|AC004691.1| Homo sapiens PAC clone RP4-740D2 from 7, complete sequence
          Length = 141990

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 74    acatacacatagggtgggggtgg 96
             |||||||||| ||||||||||||
Sbjct: 76685 acatacacatggggtgggggtgg 76663



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>gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome 19, complete sequence
          Length = 192484

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     ctgcatacatacacatagg 86
              |||||||||||||||||||
Sbjct: 155266 ctgcatacatacacatagg 155284



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>gb|AC125222.4| Mus musculus BAC clone RP23-83G5 from 8, complete sequence
          Length = 177435

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    acacatagggtgggggtgg 96
             |||||||||||||||||||
Sbjct: 74850 acacatagggtgggggtgg 74868



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>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete
             sequence
          Length = 100719

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    tagggtgggggtggccggg 101
             |||||||||||||||||||
Sbjct: 17168 tagggtgggggtggccggg 17150



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>emb|AL451134.8| Human DNA sequence from clone RP11-59J4 on chromosome 1 Contains part
             of the AIM2 gene for absent in melanoma 2, complete
             sequence
          Length = 49349

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 69    tgcatacatacacatagggtgggggtg 95
             |||| ||| ||||||||||||||||||
Sbjct: 37916 tgcacacacacacatagggtgggggtg 37890



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>gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete sequence
          Length = 164640

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gggtgggggtggccgggtg 103
             |||||||||||||||||||
Sbjct: 76172 gggtgggggtggccgggtg 76154



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>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete
              sequence
          Length = 175562

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     acaatctaatgaaatagta 49
              |||||||||||||||||||
Sbjct: 113829 acaatctaatgaaatagta 113811



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>gb|U60571.1|RNCAII1 Rattus norvegicus carbonic anhydrase II gene, 5' flanking region
          Length = 1014

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 91  gggtggccgggtggccgga 109
           |||||||||||||||||||
Sbjct: 576 gggtggccgggtggccgga 594



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>dbj|AP002535.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 4/4
          Length = 239684

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 69    tgcatacatacacatagggtgggggtg 95
             |||| ||| ||||||||||||||||||
Sbjct: 41994 tgcacacacacacatagggtgggggtg 41968



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>dbj|AB045364.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:683m11, complete
             sequence
          Length = 137890

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 69    tgcatacatacacatagggtgggggtg 95
             |||| ||| ||||||||||||||||||
Sbjct: 66745 tgcacacacacacatagggtgggggtg 66719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,140,878
Number of Sequences: 3902068
Number of extensions: 1140878
Number of successful extensions: 100203
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100141
Number of HSP's gapped (non-prelim): 62
length of query: 191
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 169
effective length of database: 17,147,199,772
effective search space: 2897876761468
effective search space used: 2897876761468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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