| Clone Name | rbaal20d13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 3e-06 Identities = 55/64 (85%) Strand = Plus / Minus Query: 116 atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175 |||||| |||||||| |||||||||||||||||||| ||| || || || || |||||| Sbjct: 36633643 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 36633584 Query: 176 tgta 179 |||| Sbjct: 36633583 tgta 36633580
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 60.0 bits (30), Expect = 3e-06 Identities = 55/64 (85%) Strand = Plus / Minus Query: 116 atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175 |||||| |||||||| |||||||||||||||||||| ||| || || || || |||||| Sbjct: 106909 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 106850 Query: 176 tgta 179 |||| Sbjct: 106849 tgta 106846
>dbj|AK102887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112K22, full insert sequence Length = 928 Score = 60.0 bits (30), Expect = 3e-06 Identities = 55/64 (85%) Strand = Plus / Minus Query: 116 atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175 |||||| |||||||| |||||||||||||||||||| ||| || || || || |||||| Sbjct: 760 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 701 Query: 176 tgta 179 |||| Sbjct: 700 tgta 697
>dbj|AK063822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A04, full insert sequence Length = 923 Score = 60.0 bits (30), Expect = 3e-06 Identities = 55/64 (85%) Strand = Plus / Minus Query: 116 atcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggt 175 |||||| |||||||| |||||||||||||||||||| ||| || || || || |||||| Sbjct: 755 atcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggt 696 Query: 176 tgta 179 |||| Sbjct: 695 tgta 692
>ref|NM_190624.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 651 Score = 58.0 bits (29), Expect = 1e-05 Identities = 54/63 (85%) Strand = Plus / Minus Query: 117 tcactggacggggaacatgacctcgttggtgcgcancggcgggagcgtccacngcgggtt 176 ||||| |||||||| |||||||||||||||||||| ||| || || || || ||||||| Sbjct: 651 tcactcgacggggaccatgacctcgttggtgcgcagcggaggcagagtaaacggcgggtt 592 Query: 177 gta 179 ||| Sbjct: 591 gta 589
>emb|BX051171.1|CNS09BNB Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC28BC06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 739 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tagtagtagcacacgtacgg 64 |||||||||||||||||||| Sbjct: 417 tagtagtagcacacgtacgg 436
>ref|XM_309440.2| Anopheles gambiae str. PEST ENSANGP00000011175 (ENSANGG00000008686), partial mRNA Length = 1690 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tagtagtagcacacgtacgg 64 |||||||||||||||||||| Sbjct: 929 tagtagtagcacacgtacgg 910
>gb|M98537.1|HUMPDS01 Human prostaglandin D2 synthase gene, promoter and exon 1 Length = 2992 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ggtgggggtggccgggtggc 105 |||||||||||||||||||| Sbjct: 1532 ggtgggggtggccgggtggc 1513
>dbj|AP006123.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT41E18, TM0207, complete sequence Length = 115290 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacgtacaatctaatgaaat 45 |||||||||||||||||||| Sbjct: 10491 tacgtacaatctaatgaaat 10510
>emb|AL627073.15| Mouse DNA sequence from clone RP23-234E14 on chromosome 4, complete sequence Length = 137991 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 agctgcatacatacacatag 85 |||||||||||||||||||| Sbjct: 43581 agctgcatacatacacatag 43562
>gb|AC147474.2| Mus musculus BAC clone RP23-425D11 from chromosome 19, complete sequence Length = 195273 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ctgcatacatacacatagg 86 ||||||||||||||||||| Sbjct: 36299 ctgcatacatacacatagg 36317
>gb|AC004691.1| Homo sapiens PAC clone RP4-740D2 from 7, complete sequence Length = 141990 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 74 acatacacatagggtgggggtgg 96 |||||||||| |||||||||||| Sbjct: 76685 acatacacatggggtgggggtgg 76663
>gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome 19, complete sequence Length = 192484 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ctgcatacatacacatagg 86 ||||||||||||||||||| Sbjct: 155266 ctgcatacatacacatagg 155284
>gb|AC125222.4| Mus musculus BAC clone RP23-83G5 from 8, complete sequence Length = 177435 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 acacatagggtgggggtgg 96 ||||||||||||||||||| Sbjct: 74850 acacatagggtgggggtgg 74868
>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete sequence Length = 100719 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 tagggtgggggtggccggg 101 ||||||||||||||||||| Sbjct: 17168 tagggtgggggtggccggg 17150
>emb|AL451134.8| Human DNA sequence from clone RP11-59J4 on chromosome 1 Contains part of the AIM2 gene for absent in melanoma 2, complete sequence Length = 49349 Score = 38.2 bits (19), Expect = 9.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 69 tgcatacatacacatagggtgggggtg 95 |||| ||| |||||||||||||||||| Sbjct: 37916 tgcacacacacacatagggtgggggtg 37890
>gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete sequence Length = 164640 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 gggtgggggtggccgggtg 103 ||||||||||||||||||| Sbjct: 76172 gggtgggggtggccgggtg 76154
>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete sequence Length = 175562 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 acaatctaatgaaatagta 49 ||||||||||||||||||| Sbjct: 113829 acaatctaatgaaatagta 113811
>gb|U60571.1|RNCAII1 Rattus norvegicus carbonic anhydrase II gene, 5' flanking region Length = 1014 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 gggtggccgggtggccgga 109 ||||||||||||||||||| Sbjct: 576 gggtggccgggtggccgga 594
>dbj|AP002535.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 4/4 Length = 239684 Score = 38.2 bits (19), Expect = 9.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 69 tgcatacatacacatagggtgggggtg 95 |||| ||| |||||||||||||||||| Sbjct: 41994 tgcacacacacacatagggtgggggtg 41968
>dbj|AB045364.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:683m11, complete sequence Length = 137890 Score = 38.2 bits (19), Expect = 9.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 69 tgcatacatacacatagggtgggggtg 95 |||| ||| |||||||||||||||||| Sbjct: 66745 tgcacacacacacatagggtgggggtg 66719 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,140,878 Number of Sequences: 3902068 Number of extensions: 1140878 Number of successful extensions: 100203 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100141 Number of HSP's gapped (non-prelim): 62 length of query: 191 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 169 effective length of database: 17,147,199,772 effective search space: 2897876761468 effective search space used: 2897876761468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)