ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20d02 |
|---|---|
| Clone Library Name | barley_pub |
>CLK1_MOUSE (P22518) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) (Protein kinase STY) Length = 483 Score = 30.8 bits (68), Expect = 0.93 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = +2 Query: 80 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKRWKERH 217 R S SH + +R HSSA RC +Y +S+ K H Sbjct: 23 RSSSSHKRKKRSHSSAREQKRCRYDHSKTTDSYYLESRSINEKAYH 68
>CLK1_HUMAN (P49759) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) Length = 484 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +2 Query: 80 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKRWKERH 217 R S SH + +R HSSA + RC Y +S+ K+ H Sbjct: 23 RSSSSHKRRKRSHSSAQENKRCKYNHSKMCDSHYLESRSINEKDYH 68
>YCW6_YEAST (P25659) Hypothetical 26.8 kDa protein in ERS1-PAT1 intergenic| region Length = 250 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/62 (24%), Positives = 27/62 (43%) Frame = +3 Query: 15 DSTGKYMAAWARTQITQSIYIIVQVSHTRKPKGNTAVLFTLPAAMRSEDRGRLDFIFNHN 194 +S GK T+ T+S + ++ + KG+T+ L L +D + + H Sbjct: 15 ESIGKTEVVSRHTEGTKSCQVSFRIKDSPSEKGSTSFLSELVVIQTLDDNDKYTVVIRHG 74 Query: 195 TS 200 TS Sbjct: 75 TS 76
>EMP3_RAT (Q9QYW5) Epithelial membrane protein 3 (EMP-3)| Length = 163 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 233 GRCQVCVSLSIACVVIENKIQSPPVLASHCSGESEEHC 120 G CQ+C S ++ + I + +LA H SG S +C Sbjct: 101 GLCQLCTSAAVFSGALIYAIHAKEILAKHPSGGSFGYC 138
>EMP3_MOUSE (O35912) Epithelial membrane protein 3 (EMP-3) (YMP protein)| (Hematopoietic neural membrane protein) (HNMP-1) Length = 163 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 233 GRCQVCVSLSIACVVIENKIQSPPVLASHCSGESEEHC 120 G CQ+C S ++ + I + +LA H SG S +C Sbjct: 101 GLCQLCTSAAVFSGALIYAIHTEEILAKHPSGGSFGYC 138
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/76 (23%), Positives = 28/76 (36%) Frame = +2 Query: 26 EVHGRLGSHTNNTKHIYHRPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKRW 205 E HG GS + + RP H K + KH + K E + + + Sbjct: 130 EKHGGKGSEEEQDEREHPRPHQPHQKEEEKHEWQHKQEKHQGKESEEEEEDQDEDEEQDK 189 Query: 206 KERHKLGSDRQEGDRR 253 + + GS+ Q RR Sbjct: 190 ESQESEGSESQREPRR 205
>CCNL1_BRARE (Q7ZVX0) Cyclin-L1| Length = 498 Score = 28.5 bits (62), Expect = 4.6 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 12/90 (13%) Frame = +2 Query: 17 QHWEVHGRLGSHTNNTKHIYHRPSFSHSKAQRKHSSALHSPRCNAKR------------G 160 Q+ + H R S + +T HR SHS HSS SPR A+R Sbjct: 363 QNGKNHSR--SRSRSTSRSPHRHRRSHSGTYSSHSSHSPSPRQKARRPSPISQLRTDRDR 420 Query: 161 PGETGFYFQSQHKRWKERHKLGSDRQEGDR 250 P ET + ++ +R + R + S + DR Sbjct: 421 PSETSRH-SNKRRRSRSRSRSNSRERVRDR 449
>TOP1_MOUSE (Q04750) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/59 (28%), Positives = 23/59 (38%) Frame = +2 Query: 80 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKRWKERHKLGSDRQEGDRRI 256 R HS ++ K S H + K G + + R KER K R GD +I Sbjct: 46 REKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKERRKEEKIRAAGDAKI 104
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 14 RQHWEVHGRLGS--HTNNTKHIYHRPSFSHSKAQRKHSSALHSPR 142 R+H+ H S H + H +HR HS A+ ++ H+P+ Sbjct: 2292 REHFSSHANSSSSRHKSKRDHHHHREKKRHSVAESTNTDEEHTPQ 2336
>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 555 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +2 Query: 80 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETG 175 R S S SK +R SSA SP + GPG +G Sbjct: 66 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSG 97
>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| Length = 845 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +2 Query: 80 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETG 175 R S S SK +R SSA SP + GPG +G Sbjct: 356 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSG 387
>FLRT2_HUMAN (O43155) Leucine-rich repeat transmembrane protein FLRT2 precursor| (Fibronectin-like domain-containing leucine-rich transmembrane protein 2) Length = 660 Score = 27.7 bits (60), Expect = 7.9 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%) Frame = +1 Query: 61 HKAYISSSKFLTLESPKETQQCSSLSPLQCEARTGGDWI-----LFSITTQAMERE---- 213 H +Y+++ T S ++T S SP GG I L S+ M ++ Sbjct: 515 HASYLNNGSN-TASSHEQTTSHSMGSPFLLAGLIGGAVIFVLVVLLSVFCWHMHKKGRYT 573 Query: 214 TQTWQRPPGRRSPDYCGRG 270 +Q W+ GRR DYC G Sbjct: 574 SQKWKYNRGRRKDDYCEAG 592
>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2336 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 215 VSLSIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 96 V++ +A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1410 VNIFVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1448
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 215 VSLSIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 96 V++ +A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1401 VNIFVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1439
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 215 VSLSIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 96 V++ +A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1413 VNIFVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1451
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -3 Query: 215 VSLSIACVVIENKIQSPPVLASHCSGESEEHCCVSFGLSS 96 V++ +A ++I + Q V+ S CS E E C+ F +S+ Sbjct: 1408 VNIFVALIIITFQEQGDKVM-SECSLEKNERACIDFAISA 1446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,564,144 Number of Sequences: 219361 Number of extensions: 906303 Number of successful extensions: 2885 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2813 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2882 length of database: 80,573,946 effective HSP length: 70 effective length of database: 65,218,676 effective search space used: 1565248224 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
