ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA... 29 2.6
2IFRD1_MOUSE (P19182) Interferon-related developmental regulator ... 28 5.8
3RNAS1_MICNV (Q9WUV3) Ribonuclease pancreatic precursor (EC 3.1.2... 28 7.5

>UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA replication|
           protein BSLF1)
          Length = 874

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 197 SKHVRTYVRRRTALAMHITHANVRTRMEHLLFXRWIGSP 81
           ++H+RTY  R T LA H+    ++ RME      W   P
Sbjct: 312 AEHMRTYFTRETYLAEHVRVQQLKIRMEPPAPYTWDPDP 350



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>IFRD1_MOUSE (P19182) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (TPA-induced sequence 7)
           (TIS7 protein)
          Length = 449

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 142 VICM-ASAVRRRTYVRTCLLLCSYLDTGERPQIHNNLKCF 258
           +IC  A++++ R    TC  +C ++ T +  ++++ L+CF
Sbjct: 174 IICDGAASIQARQTCATCFGVCCFIATDDITELYSTLECF 213



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>RNAS1_MICNV (Q9WUV3) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)|
           (RNase A)
          Length = 148

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 214 QGSCTKVSTYVRTYDDALHLPCISRMQTYXHAWNICYSFDGSGLLTVC 71
           QG C  V+T+V     A+H  C  +  T  +  + CY    +  +T C
Sbjct: 61  QGYCKPVNTFVHEPQTAVHAVCSQKNVTCKNGNSNCYKSHSALHITDC 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,469,523
Number of Sequences: 219361
Number of extensions: 739351
Number of successful extensions: 1362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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