ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 68 aaagaaaaaataatttttctgaat 91 |||||||||||||||||||||||| Sbjct: 52090 aaagaaaaaataatttttctgaat 52067
>gb|AC090707.16| Homo sapiens chromosome 11, clone RP11-701I24, complete sequence Length = 185029 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aacaaagaaaaaataattttt 85 ||||||||||||||||||||| Sbjct: 165556 aacaaagaaaaaataattttt 165536
>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence Length = 72820 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aacaaagaaaaaataattttt 85 ||||||||||||||||||||| Sbjct: 15305 aacaaagaaaaaataattttt 15285
>dbj|AK057101.1| Homo sapiens cDNA FLJ32539 fis, clone SMINT2000518 Length = 2324 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 aacaaagaaaaaataattttt 85 ||||||||||||||||||||| Sbjct: 133 aacaaagaaaaaataattttt 113
>gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In DGCR Region, complete sequence Length = 100152 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 aacaaagaaaaaataattttt 85 ||||||||||||||||||||| Sbjct: 78523 aacaaagaaaaaataattttt 78543
>gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3 In DGCR Region, complete sequence Length = 39706 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 aacaaagaaaaaataattttt 85 ||||||||||||||||||||| Sbjct: 14537 aacaaagaaaaaataattttt 14557
>dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-482L11, complete sequence Length = 170638 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 aacaaagaaaaaataattttt 85 ||||||||||||||||||||| Sbjct: 40194 aacaaagaaaaaataattttt 40214
>gb|AF201337.4| Homo sapiens chromosome 8 clone GS1-44D20 map q13.3, complete sequence Length = 93479 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 64411 acaaagaaaaaataattttt 64392
>gb|AC147056.3| Pan troglodytes BAC clone RP43-153F5 from 7, complete sequence Length = 167738 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 167220 acaaagaaaaaataattttt 167239
>emb|Z82267.1|CEF38C2 Caenorhabditis elegans Cosmid F38C2, complete sequence Length = 33869 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 gtaacaaagaaaaaataatttttc 86 |||||||| ||||||||||||||| Sbjct: 3701 gtaacaaataaaaaataatttttc 3678
>gb|AC125245.4| Homo sapiens BAC clone RP11-236P13 from 4, complete sequence Length = 135923 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 17677 acaaagaaaaaataattttt 17696
>gb|AC013470.10| Homo sapiens BAC clone RP11-472F21 from 7, complete sequence Length = 170723 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 taacaaagaaaaaataattt 83 |||||||||||||||||||| Sbjct: 147361 taacaaagaaaaaataattt 147342
>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete sequence Length = 236130 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aacaaagaaaaaataatttt 84 |||||||||||||||||||| Sbjct: 226632 aacaaagaaaaaataatttt 226651
>emb|AL590653.11| Human DNA sequence from clone RP11-142B3 on chromosome 1 Contains part of the gene for melanoma antigen recognized by T cells 2 protein (MART2), complete sequence Length = 116103 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 105832 acaaagaaaaaataattttt 105813
>emb|AL513328.12| Human DNA sequence from clone RP13-461N9 on chromosome 9 Contains the 5' end of the MUSK gene for muscle, skeletal, receptor tyrosine kinase and a ribosomal protein S21 (RPS21) pseudogene, complete sequence Length = 126999 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 78147 acaaagaaaaaataattttt 78166
>emb|AL365508.19| Human DNA sequence from clone RP11-301B7 on chromosome 6 Contains part of the gene for a novel protein highly similar to FLJ30899, complete sequence Length = 96315 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 52090 acaaagaaaaaataattttt 52071
>emb|AL357559.16| Human DNA sequence from clone RP11-393M18 on chromosome 1 Contains a novel pseudogene, a farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) (FDPS) pseudogene, a novel gene (LOC339476) and the 5' end of a solute carrier family 4 (anion exchanger) member 1 adaptor protein (SLC4A1AP) pseudogene, complete sequence Length = 190912 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aagaaaaaataatttttctg 88 |||||||||||||||||||| Sbjct: 155956 aagaaaaaataatttttctg 155975
>emb|AL356791.9| Human DNA sequence from clone RP11-80I3 on chromosome 9, complete sequence Length = 101157 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aagaaaaaataatttttctg 88 |||||||||||||||||||| Sbjct: 56439 aagaaaaaataatttttctg 56420
>emb|AL353651.11| Human DNA sequence from clone RP4-726F1 on chromosome 1p31.1-31.3 Contains a novel gene, complete sequence Length = 92141 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 atattatgtcattcagtaat 250 |||||||||||||||||||| Sbjct: 58779 atattatgtcattcagtaat 58760
>emb|AL136363.4| Human DNA sequence from clone RP6-43L17 on chromosome Xq21.1-21.33, complete sequence Length = 93296 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aacaaagaaaaaataatttt 84 |||||||||||||||||||| Sbjct: 41294 aacaaagaaaaaataatttt 41313
>gb|AC092982.3| Homo sapiens 3q BAC RP11-758I14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189219 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 aaagaaaaaataatttttctgaat 91 ||||||||||||| |||||||||| Sbjct: 41264 aaagaaaaaataaattttctgaat 41287
>gb|AC131949.1| Homo sapiens BAC clone RP11-240J11 from 4, complete sequence Length = 65210 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aacaaagaaaaaataatttt 84 |||||||||||||||||||| Sbjct: 286 aacaaagaaaaaataatttt 305
>gb|AC108732.11| Homo sapiens 3 BAC RP11-812P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 26391 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 24728 acaaagaaaaaataattttt 24747
>gb|AC090082.3| Homo sapiens chromosome 8, clone CTD-2294B10, complete sequence Length = 99486 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 66116 acaaagaaaaaataattttt 66135
>gb|AC116424.1| Homo sapiens 3 BAC RP11-265F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 60398 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 55382 acaaagaaaaaataattttt 55401
>gb|AC109439.3| Homo sapiens chromosome 5 clone CTB-1I21, complete sequence Length = 153667 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 92693 acaaagaaaaaataattttt 92674
>gb|AC084758.3| Homo sapiens chromosome 15 clone RP11-348A14 map 15q21.1, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 aaagaaaaaataatttttctgaat 91 |||||||||||| ||||||||||| Sbjct: 175075 aaagaaaaaatactttttctgaat 175098
>dbj|AK140742.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130001A21 product:hypothetical protein, full insert sequence Length = 2722 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaagaaaaaataatttttct 87 |||||||||||||||||||| Sbjct: 334 aaagaaaaaataatttttct 353
>gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complete sequence Length = 210563 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aacaaagaaaaaataatttt 84 |||||||||||||||||||| Sbjct: 788 aacaaagaaaaaataatttt 769
>gb|AC015687.11| Homo sapiens chromosome , clone RP11-18M5, complete sequence Length = 188571 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 137556 acaaagaaaaaataattttt 137537
>gb|AC013799.6| Homo sapiens, clone RP11-20J1, complete sequence Length = 186076 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aaagaaaaaataatttttct 87 |||||||||||||||||||| Sbjct: 72547 aaagaaaaaataatttttct 72528
>gb|AC009808.8| Homo sapiens chromosome 8, clone RP11-138K8, complete sequence Length = 173805 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 117987 acaaagaaaaaataattttt 117968
>emb|BX323593.12| Zebrafish DNA sequence from clone DKEY-107I18 in linkage group 14, complete sequence Length = 198776 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 taattagttgttctctttta 24 |||||||||||||||||||| Sbjct: 31271 taattagttgttctctttta 31252
>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete sequence Length = 168606 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 taacaaagaaaaaataattt 83 |||||||||||||||||||| Sbjct: 48913 taacaaagaaaaaataattt 48932
>gb|AC122311.6| Mus musculus BAC clone RP23-298B23 from chromosome 6, complete sequence Length = 209435 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 tttctgaatcattaattctatgca 106 ||||||||||||||||||| |||| Sbjct: 75823 tttctgaatcattaattctgtgca 75846
>gb|AC107027.9| Homo sapiens 3 BAC RP11-517B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171562 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 171313 acaaagaaaaaataattttt 171294
>dbj|BS000065.1| Pan troglodytes chromosome 22 clone:RP43-042H09, map 22, complete sequences Length = 154519 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaagaaaaaataatttttct 87 |||||||||||||||||||| Sbjct: 78161 aaagaaaaaataatttttct 78180
>gb|AC005188.1|AC005188 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence Length = 114918 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 acaaagaaaaaataattttt 85 |||||||||||||||||||| Sbjct: 112360 acaaagaaaaaataattttt 112379
>gb|AC004701.1|AC004701 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence Length = 143839 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aaagaaaaaataatttttct 87 |||||||||||||||||||| Sbjct: 53342 aaagaaaaaataatttttct 53323
>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence Length = 151729 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 atcattcaaataggaatatg 132 |||||||||||||||||||| Sbjct: 36499 atcattcaaataggaatatg 36518
>gb|AF020503.1|AF020503 Homo sapiens FRA3B common fragile region, diadenosine triphosphate hydrolase (FHIT) gene, exon 5 Length = 206880 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaagaaaaaataatttttct 87 |||||||||||||||||||| Sbjct: 77153 aaagaaaaaataatttttct 77172
>gb|AC171002.2| Mus musculus BAC clone RP23-145F22 from chromosome 6, complete sequence Length = 186846 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 tttctgaatcattaattctatgca 106 ||||||||||||||||||| |||| Sbjct: 151576 tttctgaatcattaattctgtgca 151599
>emb|AL831786.7| Mouse DNA sequence from clone RP23-177C18 on chromosome 4, complete sequence Length = 80871 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaagaaaaaataatttttct 87 |||||||||||||||||||| Sbjct: 68163 aaagaaaaaataatttttct 68182 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,006,360 Number of Sequences: 3902068 Number of extensions: 4006360 Number of successful extensions: 94928 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94816 Number of HSP's gapped (non-prelim): 112 length of query: 355 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 333 effective length of database: 17,147,199,772 effective search space: 5710017524076 effective search space used: 5710017524076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
