ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6p02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 939 nt] Length = 939 Score = 868 bits (438), Expect = 0.0 Identities = 520/539 (96%), Gaps = 15/539 (2%) Strand = Plus / Minus Query: 1 gtatgttttgcc-tgttttaaaata-cacgcatgggtg-atattacaagtacagcctccg 57 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |||| Sbjct: 916 gtatgttttgccatgttttaaaataacacgcatgggtatatattacaagtacagc-tccg 858 Query: 58 tcggaagccatgggcgaatccacaaggacaaagtttcaccaccggaactttaagattaca 117 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 857 tcggaagccatgggcgaatccacaaggacaaagtttcaccaccggaac------attaca 804 Query: 118 acacgtttttgcactgccacctactcctccacactttgtacatcctcagcaccccaaaat 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 803 acacgtttttgcactgccacctactcctccacactttgtacatcctcagcaccccaaaat 744 Query: 178 aataattcagaccacctgaaacctccttggtcggtgaaatcgacggatttattggccgga 237 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 743 aataattcagaccacct-aaacctccttggtcggtgaaatcgacggatttattggccgga 685 Query: 238 gatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaa 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 gatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaa 625 Query: 298 cggccccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccag 357 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 cggccccttcccgtgcacgttgtgctgcaccaggaaccccaggaacgccagcatggccag 565 Query: 358 tctcccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggtt 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 564 tctcccgttggcgagctccttctccttgttctcgag---gggggcgaagttgagggggtt 508 Query: 418 gaagacgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggg 477 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 gaagactctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggg 448 Query: 478 gtcctggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtag 536 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 gtcctggttgacggag-cccgggttcttgatgtcctgccaccgccggatctcgacgtag 390 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 gtggaggaggaggcgaagta 586 |||||||||||||||||||| Sbjct: 362 gtggaggaggaggcgaagta 343
>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4) mRNA, partial cds; nuclear gene for chloroplast product Length = 687 Score = 692 bits (349), Expect = 0.0 Identities = 359/361 (99%), Gaps = 1/361 (0%) Strand = Plus / Minus Query: 226 ttattggccggagatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctg 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 ttattggccggagatggtctggatgatggtgttgtgccatgggtcggccaggtgctgctg 628 Query: 286 caggttctcgaacggccccttcccggtcacgttgtgctgcaccaggaaccccaggaacgc 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 caggttctcgaacggccccttcccggtcacgttgtgctgcaccaggaaccccaggaacgc 568 Query: 346 cagcatggccagtctcccgttggcgagctccttctccttgttctcgagggtgggggcgaa 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 cagcatggccagtctcccgttggcgagctccttctccttgttctcgagggtgggggcgaa 508 Query: 406 gttgagggggttgaagacgctgccggggtagccgcactcgtggggcgggaggctgtagct 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 gttgagggggttgaagacgctgccggggtagccgcactcgtggggcgggaggctgtagct 448 Query: 466 cttgaagatggggtcctggttgacggagccccgggttcttgatgtcctgccaccgccgga 525 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 447 cttgaagatggggtcctggttgacggag-cccgggttcttgatgtcctgccaccgccgga 389 Query: 526 tctcgacgtagtggaagaggatgaactcgatgacaaagagcgtggaggaggaggcgaagt 585 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 388 tctcgacgtagtggaagaggatgaactcgatgacgaagagcgtggaggaggaggcgaagt 329 Query: 586 a 586 | Sbjct: 328 a 328
>ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 787 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 728 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 727 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 668 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 667 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 608 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 607 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 548 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 547 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 489 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 488 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 444
>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 493 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 492 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 448
>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 493 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 492 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 448
>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1178 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 788 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 729 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 728 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 669 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 668 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 609 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 608 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 549 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 548 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 490 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 489 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 445
>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1188 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 787 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 728 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 727 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 668 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 667 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 608 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 607 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 548 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 547 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 489 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 488 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 444
>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1191 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 790 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 731 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 730 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 671 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 670 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 611 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 610 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 551 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 550 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 492 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 491 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 447
>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full insert sequence Length = 1140 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 493 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 492 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 448
>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full insert sequence Length = 1177 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 788 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 729 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 728 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 669 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 668 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 609 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 608 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 549 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 548 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 490 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 489 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 445
>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full insert sequence Length = 1190 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 789 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 730 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 729 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 670 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 669 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 610 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 609 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 550 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 549 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 491 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 490 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 446
>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full insert sequence Length = 1138 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 791 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 732 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 731 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 672 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 671 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 612 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 611 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 552 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 551 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 493 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 492 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 448
>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence Length = 1078 Score = 454 bits (229), Expect = e-124 Identities = 317/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 796 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 737 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 736 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 677 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 676 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 617 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 616 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 557 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 556 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 498 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 497 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 453
>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full insert sequence Length = 1193 Score = 438 bits (221), Expect = e-120 Identities = 315/345 (91%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 792 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 733 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 732 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 673 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 672 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 613 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 612 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 553 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 552 tggttgacgcag-ccagggtccttgatgtcctgccaccgccggatctccacgtagtggaa 494 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 |||||||||||||||| || ||||| || || || |||||||| Sbjct: 493 cgggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 449
>ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 428 bits (216), Expect = e-117 Identities = 311/340 (91%), Gaps = 2/340 (0%) Strand = Plus / Plus Query: 248 atgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttc 307 ||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||||||||| Sbjct: 1 atgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggccccttc 60 Query: 308 ccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctccc-gtt 366 |||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||| Sbjct: 61 tgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctccctgtt 120 Query: 367 ggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaagacgct 426 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 121 ggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaagacgct 180 Query: 427 gccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcctggtt 486 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 181 gccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcctggtt 240 Query: 487 gacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaagagga 546 |||| || || |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 241 gacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaacagga 299 Query: 547 tgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||| || ||||| || || || |||||||| Sbjct: 300 tgaactcgatgacgaacagcgtcgacgacgacgcgaagta 339
>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product Length = 1128 Score = 424 bits (214), Expect = e-115 Identities = 316/346 (91%), Gaps = 3/346 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 767 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 708 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 707 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 648 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttga-gggggttgaa 420 |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| Sbjct: 647 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgaggggggttgaa 588 Query: 421 gacgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtc 480 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 587 gacgctgcc-gggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtc 529 Query: 481 ctggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtgga 540 |||||||||| || || |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 528 ctggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtgga 470 Query: 541 agaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 | ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 469 acaggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 424
>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1162 Score = 404 bits (204), Expect = e-109 Identities = 298/328 (90%), Gaps = 1/328 (0%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 754 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 695 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 694 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 635 Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 634 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 575 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct: 574 acgctgccggggtagccgcactcgtcgctggggagtctgtagctcttgaagatggggtcc 515 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || ||||||||||||||||||||| | |||||||| ||||||||||| Sbjct: 514 tggttgacgcag-ccagggttcttgatgtcctgccactggcggatctccacgtagtggaa 456 Query: 542 gaggatgaactcgatgacaaagagcgtg 569 ||||||||||||||||| || |||||| Sbjct: 455 caggatgaactcgatgacgaacagcgtg 428
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 311 bits (157), Expect = 1e-81 Identities = 209/225 (92%), Gaps = 1/225 (0%) Strand = Plus / Plus Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 21164651 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 21164710 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 21164711 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 21164770 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 21164771 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 21164829 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 21164830 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 21164874 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Plus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 21164438 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 21164497 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 21164498 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 21164557 Query: 362 cc 363 || Sbjct: 21164558 cc 21164559
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 311 bits (157), Expect = 1e-81 Identities = 209/225 (92%), Gaps = 1/225 (0%) Strand = Plus / Plus Query: 362 ccgttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaag 421 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 135861 ccgttggcgagctccttctccttggcctcgagggtgggctcgaagttgagggggttgaag 135920 Query: 422 acgctgccggggtagccgcactcgtggggcgggaggctgtagctcttgaagatggggtcc 481 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 135921 acgctgccggggtagccgcactcgtgcggcgggaggctgtagctcttgaagatggggtcc 135980 Query: 482 tggttgacggagccccgggttcttgatgtcctgccaccgccggatctcgacgtagtggaa 541 ||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 135981 tggttgacgcag-ccagggttcttgatgtcctgccaccgccggatctccacgtagtggaa 136039 Query: 542 gaggatgaactcgatgacaaagagcgtggaggaggaggcgaagta 586 ||||||||||||||||| || ||||| || || || |||||||| Sbjct: 136040 caggatgaactcgatgacgaacagcgtcgacgacgacgcgaagta 136084 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Plus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||||||||||||||||||||| ||||| | |||||||||| ||||||| ||||| ||| Sbjct: 135648 gtctggatgatggtgttgtgccacgggtcagacaggtgctgcagcaggttgtcgaagggc 135707 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 |||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct: 135708 cccttctgcgtcacgttgtgctgcaccaggaaccccaagaacgccagcatcgccagcctc 135767 Query: 362 cc 363 || Sbjct: 135768 cc 135769
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) Length = 1013 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Minus Query: 251 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 310 ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || Sbjct: 735 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 676 Query: 311 gtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcg 370 || || ||||| ||||| | || |||||||| || | ||| |||| |||||| |||||| Sbjct: 675 gttacattgtgttgcactacaaatcccaggaatgctaacattgccaatctcccattggcg 616 Query: 371 agctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 422 ||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 615 agctccttctccttggcctccatggatggggagaagttgagagggttgaaga 564
>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) (partial) Length = 968 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Minus Query: 251 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 310 ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || Sbjct: 712 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 653 Query: 311 gtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcg 370 || || ||||| ||||| | || |||||||| || | ||| |||| |||||| |||||| Sbjct: 652 gttacattgtgttgcactacaaatcccaggaatgctaacattgccaatctcccattggcg 593 Query: 371 agctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 422 ||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 592 agctccttctccttggcctccatggatggggagaagttgagagggttgaaga 541
>emb|X57706.1|LECAB11 L.esculentum DNA for CAB11 gene Length = 1393 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 245 tggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggcccc 304 |||||||||||||||||||||||||| | ||||||||| | ||||| || || || ||| Sbjct: 1192 tggatgatggtgttgtgccatgggtcagagaggtgctgcagaaggttgtcaaaaggtccc 1133 Query: 305 ttcccggtcacgttgtgctgcac 327 ||||| ||||| ||||||||||| Sbjct: 1132 ttcccagtcacattgtgctgcac 1110 Score = 69.9 bits (35), Expect = 9e-09 Identities = 96/115 (83%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 457 gctgtagctcttgaagatggggtcctggttgacggagccccgggttcttgatgtcctgcc 516 ||||||| |||||||||| ||||| |||||||| || |||||||| ||||| |||| Sbjct: 903 gctgtagttcttgaagatagggtcttggttgacacttcct-gggttcttaatgtcttgcc 845 Query: 517 accgccggatctcgacgtagtggaagaggatgaactcgatgacaaagagcgtgga 571 ||| | |||||||||||||||||| | |||||||||||| ||||| || ||||| Sbjct: 844 accttctgatctcgacgtagtggaacaagatgaactcgatcacaaacagggtgga 790
>emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlorophyll a/b binding protein (cab11 gene) Length = 1062 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||| || |||||||||||||||||||| | || |||||| | ||||| || || ||| Sbjct: 857 gtctgaataatggtgttgtgccatgggtctgatagatgctgcagaaggttatcaaaaggc 798 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 ||||| || ||||| ||||| ||||| | ||| || | ||| |||| ||| |||| |||| Sbjct: 797 ccctttccagtcacattgtgttgcacaatgaatcctaagaatgccaacattgccaatctc 738 Query: 362 ccgttggcgagctccttctccttg 385 || || || ||||||||||||||| Sbjct: 737 ccattagcaagctccttctccttg 714 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 557 |||||||||||||||||||| | || ||||| || |||||||| | ||||||||| || Sbjct: 602 gggttcttgatgtcctgccatctccttatctccacatagtggaataagatgaactcaatc 543 Query: 558 acaaa 562 ||||| Sbjct: 542 acaaa 538
>emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chlorophyll a/b-binding protein type 4 Length = 819 Score = 71.9 bits (36), Expect = 2e-09 Identities = 138/172 (80%) Strand = Plus / Minus Query: 251 atggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccg 310 ||||||||||||||||| || | ||| || ||| ||| ||| |||||||| ||||| || Sbjct: 743 atggtgttgtgccatggatcagacagatgttgcagcaagttgtcgaacgggccctttcct 684 Query: 311 gtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcg 370 || || ||||| ||||| | || |||||||| || | ||| |||| ||||| ||||| Sbjct: 683 gttacattgtgttgcactacaaatcccaggaatgctaacattgccaacctcccattggca 624 Query: 371 agctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 422 ||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 623 agctccttctccttggcctccatggatggggagaagttgagcgggttgaaga 572
>gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, complete cds Length = 1008 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Minus Query: 242 gtctggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggc 301 ||||| || |||||||||||||||||||| | || |||||| | ||||| || || ||| Sbjct: 773 gtctgaataatggtgttgtgccatgggtctgatagatgctgcagaaggttatcaaaaggc 714 Query: 302 cccttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctc 361 ||||| || ||||| ||||| ||||| | ||| || | ||| |||| ||| |||| |||| Sbjct: 713 ccctttccagtcacattgtgttgcacaatgaatcctaagaatgccaacattgccaatctc 654 Query: 362 ccgttggcgagctccttctccttg 385 || || || ||||||||||||||| Sbjct: 653 ccattagcaagctccttctccttg 630 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 557 |||||||||||||||||||| | || ||||| || |||||||| | ||||||||| || Sbjct: 518 gggttcttgatgtcctgccatctccttatctccacatagtggaataagatgaactcaatc 459 Query: 558 acaaa 562 ||||| Sbjct: 458 acaaa 454
>emb|X82497.1|NTCAG4 N.tabacum mRNA for light-harvesting Ch1 a/b binding protein Length = 726 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| ||||||| | |||||||||||||||||| | |||||||||||| Sbjct: 335 gggttcttgatgtcttgccaccttctgatctcgacgtagtggaacaagatgaactcgat 277 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 atggtgttgtgccatgggtcgg 272 |||||||||||||||||||||| Sbjct: 581 atggtgttgtgccatgggtcgg 560
>gb|AY233205.1| Vitis vinifera chlorophyll a/b-binding protein (Lhca1) mRNA, partial cds; nuclear gene for chloroplast product Length = 476 Score = 65.9 bits (33), Expect = 1e-07 Identities = 114/141 (80%) Strand = Plus / Minus Query: 245 tggatgatggtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggcccc 304 |||||||||||||||||||||||||| | | ||||||| ||||| || || ||||| Sbjct: 273 tggatgatggtgttgtgccatgggtctgagatgtgctgcaagaggttgtcaaatggccct 214 Query: 305 ttcccggtcacgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccg 364 || || ||||||||||| || || | ||||||||||| |||| ||| || | ||||||| Sbjct: 213 tttccagtcacgttgtgttgaacaataaaccccaggaatgccaacattgctaatctcccg 154 Query: 365 ttggcgagctccttctccttg 385 || || || ||||| |||||| Sbjct: 153 ttagcaagttccttttccttg 133 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccac 518 ||||||||||||||||||||| Sbjct: 21 gggttcttgatgtcctgccac 1
>gb|AF359128.1| Pinus sylvestris plus tree E1101 LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 498 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 365 ttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 422 ||||||||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 318 ttggcgagctccttctccttggcctccatggatggggagaagttgagagggttgaaga 261
>gb|AF359127.1| Pinus sylvestris plus tree E635C LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 521 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 365 ttggcgagctccttctccttgttctcgagggtgggggcgaagttgagggggttgaaga 422 ||||||||||||||||||||| ||| | || |||| ||||||||| |||||||||| Sbjct: 318 ttggcgagctccttctccttggcctccatggatggggagaagttgagagggttgaaga 261
>ref|NM_114615.3| Arabidopsis thaliana CAB4; chlorophyll binding AT3G47470 (CAB4) mRNA, complete cds Length = 1266 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 994 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 935 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 934 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 875 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 874 tctttctccttg 863 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 751 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 693
>gb|BT015429.1| Arabidopsis thaliana At3g47470 mRNA sequence Length = 405 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 383 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 324 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 323 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 264 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 263 tctttctccttg 252 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 140 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 82
>gb|BT000093.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 891 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 734 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 675 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 674 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 615 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 614 tctttctccttg 603 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 491 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 433
>gb|AY093080.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 1055 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 834 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 775 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 774 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 715 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 714 tctttctccttg 703 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 591 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 533
>gb|AF325012.2|AF325012 Arabidopsis thaliana AT3g47470 (AT3g47470/F1P2_20) mRNA, complete cds Length = 715 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 451 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 392 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 391 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 332 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 331 tctttctccttg 320 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 208 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 150
>emb|BX824775.1|CNS0A6UB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 508 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 297 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 238 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 237 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 178 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 177 tctttctccttg 166 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgta 535 |||||||||||||| |||||||| | |||||| ||||| Sbjct: 54 gggttcttgatgtcttgccaccgtctgatctcaacgta 17
>emb|BX826089.1|CNS0A6C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 824 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 765 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 764 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 705 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 704 tctttctccttg 693 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 581 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 523
>emb|BX823268.1|CNS0A6MH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1046 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 808 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 749 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 748 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 689 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 688 tctttctccttg 677 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 565 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 507
>gb|AY086470.1| Arabidopsis thaliana clone 2531 mRNA, complete sequence Length = 1267 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 995 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 936 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 935 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 876 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 875 tctttctccttg 864 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 752 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 694
>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence Length = 1460 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 241 ggtctggatgatggtgttgtgcca 264 |||||||||||||||||||||||| Sbjct: 280 ggtctggatgatggtgttgtgcca 303
>gb|M63931.1|ATHCABM Arabidopsis thaliana light-harvesting chlorophyll a/b-binding protein (Cab4) mRNA, complete cds Length = 1050 Score = 48.1 bits (24), Expect = 0.033 Identities = 105/132 (79%) Strand = Plus / Minus Query: 254 gtgttgtgccatgggtcggccaggtgctgctgcaggttctcgaacggccccttcccggtc 313 ||||||||||||||||| | || ||||||| ||| ||||| || || || || || ||| Sbjct: 804 gtgttgtgccatgggtcagacaagtgctgcaacagattctcaaatggtccttttccagtc 745 Query: 314 acgttgtgctgcaccaggaaccccaggaacgccagcatggccagtctcccgttggcgagc 373 || ||||| || |||| ||||| | ||| |||| ||| |||| |||||||| || ||| Sbjct: 744 acattgtgttgaaccacaaaccctaagaatgccaacatcgccaacctcccgtttgctagc 685 Query: 374 tccttctccttg 385 || ||||||||| Sbjct: 684 tctttctccttg 673 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 561 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 503
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 7325 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 7383
>emb|BX825536.1|CNS0A6EC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgat 556 |||||||||||||| |||||||| | |||||| ||||| || || | ||||||||||| Sbjct: 578 gggttcttgatgtcttgccaccgtctgatctcaacgtaatgaaacaatatgaactcgat 520
>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V, complete sequence Length = 114056 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 137 cctactcctccacactttgtaca 159 ||||||||||||||||||||||| Sbjct: 37526 cctactcctccacactttgtaca 37504
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ctgccacctactcctccacac 151 ||||||||||||||||||||| Sbjct: 11776 ctgccacctactcctccacac 11756
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctgccacctactcctccacac 151 ||||||||||||||||||||| Sbjct: 60657 ctgccacctactcctccacac 60677
>gb|AC127457.3| Homo sapiens chromosome 16 clone RP11-100F10, complete sequence Length = 86390 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 tatgttttgcctgttttaaaa 22 ||||||||||||||||||||| Sbjct: 53886 tatgttttgcctgttttaaaa 53866
>gb|AC106782.5| Homo sapiens chromosome 16 clone RP11-347C12, complete sequence Length = 181001 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 tatgttttgcctgttttaaaa 22 ||||||||||||||||||||| Sbjct: 155062 tatgttttgcctgttttaaaa 155042
>gb|BC036687.1| Homo sapiens cDNA clone IMAGE:5259465 Length = 3993 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 caaggacaaagtttcaccacc 100 ||||||||||||||||||||| Sbjct: 3765 caaggacaaagtttcaccacc 3785
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 gcgtggaggaggaggcgaagt 585 ||||||||||||||||||||| Sbjct: 116464 gcgtggaggaggaggcgaagt 116484
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 cagcaccccaaaataataatt 184 ||||||||||||||||||||| Sbjct: 97909 cagcaccccaaaataataatt 97929
>ref|XM_393975.2| PREDICTED: Apis mellifera hypothetical LOC410496 (LOC410496), mRNA Length = 4959 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 560 aaagagcgtggaggaggaggcgaag 584 |||||||||||||||||||| |||| Sbjct: 1317 aaagagcgtggaggaggaggagaag 1341
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 gcgtggaggaggaggcgaagt 585 ||||||||||||||||||||| Sbjct: 15262765 gcgtggaggaggaggcgaagt 15262785
>ref|XM_392275.2| PREDICTED: Apis mellifera similar to ENSANGP00000012777 (LOC408740), mRNA Length = 1629 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 ttctccttgttctcgagggtg 397 ||||||||||||||||||||| Sbjct: 1022 ttctccttgttctcgagggtg 1002
>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence Length = 172400 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 caaggacaaagtttcaccacc 100 ||||||||||||||||||||| Sbjct: 170063 caaggacaaagtttcaccacc 170083
>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively spliced Length = 9504 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctgccacctactcctccacac 151 ||||||||||||||||||||| Sbjct: 4304 ctgccacctactcctccacac 4324
>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence Length = 173842 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 caaggacaaagtttcaccacc 100 ||||||||||||||||||||| Sbjct: 111543 caaggacaaagtttcaccacc 111563
>dbj|AK027185.1| Homo sapiens cDNA: FLJ23532 fis, clone LNG06911 Length = 3189 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 caaggacaaagtttcaccacc 100 ||||||||||||||||||||| Sbjct: 2950 caaggacaaagtttcaccacc 2970
>emb|X57707.1|LECAB12 L.esculentum DNA for Cab12 gene Length = 1493 Score = 42.1 bits (21), Expect = 2.0 Identities = 54/65 (83%) Strand = Plus / Minus Query: 498 gggttcttgatgtcctgccaccgccggatctcgacgtagtggaagaggatgaactcgatg 557 |||||||| ||||| ||||| || || || || |||||||| || | |||||||||||| Sbjct: 891 gggttcttaatgtcttgccaacgtcgaatttcaacgtagtgaaacaagatgaactcgatc 832 Query: 558 acaaa 562 ||||| Sbjct: 831 acaaa 827
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 gatggtctggatgatggtgtt 258 ||||||||||||||||||||| Sbjct: 631602 gatggtctggatgatggtgtt 631582
>gb|AY107739.1| Zea mays PCO089350 mRNA sequence Length = 645 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 436 gccgcactcgtggggcgggaggctg 460 |||||||||||||||| |||||||| Sbjct: 310 gccgcactcgtggggctggaggctg 286
>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete sequence Length = 229685 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ctgccacctactcctccacac 151 ||||||||||||||||||||| Sbjct: 31518 ctgccacctactcctccacac 31538
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 gcgtggaggaggaggcgaagt 585 ||||||||||||||||||||| Sbjct: 15271006 gcgtggaggaggaggcgaagt 15271026
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 164 cagcaccccaaaataataatt 184 ||||||||||||||||||||| Sbjct: 9849 cagcaccccaaaataataatt 9829
>ref|NM_188089.1| Oryza sativa (japonica cultivar-group), Ozsa8521 predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cggagatggtctggatgatggtgttgtg 261 ||||||||||||||| ||||| |||||| Sbjct: 1009 cggagatggtctggaggatggcgttgtg 982
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tggcgagctccttctccttg 385 |||||||||||||||||||| Sbjct: 363820 tggcgagctccttctccttg 363839
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 gagcgtggaggaggaggcga 582 |||||||||||||||||||| Sbjct: 669641 gagcgtggaggaggaggcga 669660
>gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosome 5, complete sequence Length = 184869 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 tgacaaagagcgtggaggag 575 |||||||||||||||||||| Sbjct: 71015 tgacaaagagcgtggaggag 70996
>emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chromosome 20, complete sequence Length = 47325 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 gtgctgcaccaggaaccccaggaa 342 |||| ||||||||||||||||||| Sbjct: 32871 gtgcagcaccaggaaccccaggaa 32848
>ref|XM_567806.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK01210) partial mRNA Length = 1432 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tggcgagctccttctccttg 385 |||||||||||||||||||| Sbjct: 1096 tggcgagctccttctccttg 1077
>ref|XM_806244.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508989.80) partial mRNA Length = 2529 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 aaagagcgtggaggaggagg 579 |||||||||||||||||||| Sbjct: 1515 aaagagcgtggaggaggagg 1534
>ref|XM_809893.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509569.170) partial mRNA Length = 2526 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 aaagagcgtggaggaggagg 579 |||||||||||||||||||| Sbjct: 1515 aaagagcgtggaggaggagg 1534
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 catcctcagcaccccaaaat 177 |||||||||||||||||||| Sbjct: 132164 catcctcagcaccccaaaat 132183
>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin inhibitor H2 polypeptide (LOC478011), mRNA Length = 2941 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tggtctggatgatggtgttg 259 |||||||||||||||||||| Sbjct: 377 tggtctggatgatggtgttg 358
>emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chromosome 10q25.2-26.2 Contains the 5' end of a novel gene, the 5' end of the SAC2 gene for Sac domain-containing inositol phosphatase 2 and three CpG islands, complete sequence Length = 114244 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tgttttaaaatacacgcatg 32 |||||||||||||||||||| Sbjct: 68279 tgttttaaaatacacgcatg 68298
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ggtctggatgatggtgttgt 260 |||||||||||||||||||| Sbjct: 172999 ggtctggatgatggtgttgt 172980
>gb|AF448525.1| Mytilus galloprovincialis precollagen-P mRNA, complete cds Length = 2781 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 caccaggaaccccaggaacgccag 348 ||||||||||||||||||| |||| Sbjct: 1066 caccaggaaccccaggaacaccag 1089
>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9, complete sequence Length = 179135 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 caccccaaaataataattca 186 |||||||||||||||||||| Sbjct: 16903 caccccaaaataataattca 16922
>gb|AC023698.4| Drosophila melanogaster X BAC RP98-17C9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160023 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 gaactcgatgacaaagagcg 567 |||||||||||||||||||| Sbjct: 37532 gaactcgatgacaaagagcg 37551
>ref|NM_176700.1| Drosophila melanogaster carmine CG3035-RA (cm), mRNA Length = 1470 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 gaactcgatgacaaagagcg 567 |||||||||||||||||||| Sbjct: 284 gaactcgatgacaaagagcg 265
>dbj|AB189167.1| Oryza sativa (japonica cultivar-group) OsIDHa mRNA for NAD-dependent isocitrate dehydrogenase a, complete cds Length = 1424 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cggagatggtctggatgatggtgttgtg 261 ||||||||||||||| ||||| |||||| Sbjct: 1135 cggagatggtctggaggatggcgttgtg 1108
>gb|AC073160.8| Homo sapiens chromosome 10 clone RP11-348G8, complete sequence Length = 189817 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tgttttgcctgttttaaaat 23 |||||||||||||||||||| Sbjct: 96259 tgttttgcctgttttaaaat 96278
>gb|AY069388.1| Drosophila melanogaster LD09732 full length cDNA Length = 1477 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 gaactcgatgacaaagagcg 567 |||||||||||||||||||| Sbjct: 270 gaactcgatgacaaagagcg 251
>gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 878 nt] Length = 878 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 331 gaaccccaggaacgccagcatggccagtctcccgtt 366 |||||||| |||||||||||| ||||| | |||||| Sbjct: 543 gaaccccacgaacgccagcatcgccagccgcccgtt 508
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcggccaggtgctgctgcag 288 |||||||||||||||||||| Sbjct: 665703 tcggccaggtgctgctgcag 665722
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cggagatggtctggatgatggtgttgtg 261 ||||||||||||||| ||||| |||||| Sbjct: 9668714 cggagatggtctggaggatggcgttgtg 9668687
>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence Length = 55514 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 catgggtgatattacaagta 48 |||||||||||||||||||| Sbjct: 11077 catgggtgatattacaagta 11096
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cggagatggtctggatgatggtgttgtg 261 ||||||||||||||| ||||| |||||| Sbjct: 106717 cggagatggtctggaggatggcgttgtg 106690
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 ccggagatggtctggatgatggtg 256 ||||||||||||||||||| |||| Sbjct: 5018847 ccggagatggtctggatgagggtg 5018824
>dbj|AB122118.1| Chlamydomonas reinhardtii LhcI-5 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 1886 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 468 tgaagatggggtcctggttgacggagcc 495 |||||||||||||||||| |||||||| Sbjct: 1085 tgaagatggggtcctggtccacggagcc 1058
>gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1) mRNA, complete cds; nuclear gene for chloroplast product Length = 784 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 331 gaaccccaggaacgccagcatggccagtctcccgtt 366 |||||||| |||||||||||| ||||| | |||||| Sbjct: 661 gaaccccacgaacgccagcatcgccagccgcccgtt 626
>gb|AF110233.1|AF110233 Drosophila melanogaster clathrin-associated adaptor complex AP-3 medium chain mRNA, complete cds Length = 1455 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 gaactcgatgacaaagagcg 567 |||||||||||||||||||| Sbjct: 280 gaactcgatgacaaagagcg 261
>gb|AC005874.3|AC005874 citb_175_g_20, complete sequence Length = 177750 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tgttttaaaatacacgcatg 32 |||||||||||||||||||| Sbjct: 139429 tgttttaaaatacacgcatg 139448
>dbj|AK059596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D11, full insert sequence Length = 1522 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cggagatggtctggatgatggtgttgtg 261 ||||||||||||||| ||||| |||||| Sbjct: 1149 cggagatggtctggaggatggcgttgtg 1122
>gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 of 74 of the complete sequence Length = 331952 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 gaactcgatgacaaagagcg 567 |||||||||||||||||||| Sbjct: 171194 gaactcgatgacaaagagcg 171213
>gb|AF082100.1|AF082100 Streptomyces sp. MA6548 FK506 peptide synthetase (fkbP), FK506 oxidase (fkbO), and FK506 polyketide synthase (fkbB) genes, complete cds Length = 28732 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 267 ggtcggccaggtgctgctgcaggt 290 ||||| |||||||||||||||||| Sbjct: 3454 ggtcgtccaggtgctgctgcaggt 3431
>gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Contig902E_1999.01.14, complete sequence Length = 177747 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tgttttaaaatacacgcatg 32 |||||||||||||||||||| Sbjct: 139426 tgttttaaaatacacgcatg 139445
>gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome 5, complete sequence Length = 226382 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 tgacaaagagcgtggaggag 575 |||||||||||||||||||| Sbjct: 198528 tgacaaagagcgtggaggag 198509
>emb|AJ009657.1|DME9657 Drosophila melanogaster mRNA for Mu3 subunit of clathrin-associated protein complex AP-3 Length = 1476 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 gaactcgatgacaaagagcg 567 |||||||||||||||||||| Sbjct: 269 gaactcgatgacaaagagcg 250
>gb|M19529.1|PIGFSA Pig follistatin (FS) gene, complete cds Length = 6247 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 gagcgtggaggaggaggcga 582 |||||||||||||||||||| Sbjct: 2650 gagcgtggaggaggaggcga 2631 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,838,198 Number of Sequences: 3902068 Number of extensions: 5838198 Number of successful extensions: 110583 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110038 Number of HSP's gapped (non-prelim): 519 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
