ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20c06 |
|---|---|
| Clone Library Name | barley_pub |
>QORH_ARATH (Q9SV68) Putative chloroplastic quinone-oxidoreductase homolog (EC| 1.-.-.-) Length = 329 Score = 100 bits (248), Expect = 1e-21 Identities = 51/84 (60%), Positives = 64/84 (76%) Frame = -3 Query: 370 LTDAGRVIDITXNXSAILTSALHWVTFSKKRLVPLLLSPNKADLEFLVGLLKEGKLKTVI 191 L++ G+VIDIT +A+ T A+ +T SKK+LVPLLL P +LEF+V L+KEGK+KTVI Sbjct: 241 LSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVI 300 Query: 190 DSRFPLSDAGKAWQSSIDGHATGK 119 DS+ PLS A AW SIDGHATGK Sbjct: 301 DSKHPLSKAEDAWAKSIDGHATGK 324
>QORH_SPIOL (Q8H0M1) Chloroplastic quinone-oxidoreductase homolog (EC 1.-.-.-)| (ceQORH) Length = 329 Score = 90.1 bits (222), Expect = 1e-18 Identities = 46/84 (54%), Positives = 61/84 (72%) Frame = -3 Query: 370 LTDAGRVIDITXNXSAILTSALHWVTFSKKRLVPLLLSPNKADLEFLVGLLKEGKLKTVI 191 L++AG+VID+T +A++T A +TFSKK+LVPLLL P + E++V L+KE KLKTVI Sbjct: 241 LSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVI 300 Query: 190 DSRFPLSDAGKAWQSSIDGHATGK 119 DS+ PLS AW + GHATGK Sbjct: 301 DSKHPLSKGEDAWSRIMGGHATGK 324
>ARGC_MYCLE (Q9CC15) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 120 LPVAWPSILLCHALPASLKGNLE-SITVFSLPSLSSPTKNSRSALLGDRSRGTRR 281 +P +P+ +L LPA +G +E ++TVF++ +S + +++ LLG G+ R Sbjct: 150 VPGCYPTAILLALLPAMAEGLIEPAVTVFAVSGISGAGRAAKTKLLGSEVIGSAR 204
>RT4I1_MOUSE (Q924D0) Reticulon-4-interacting protein 1, mitochondrial precursor| (NOGO-interacting mitochondrial protein) Length = 396 Score = 31.6 bits (70), Expect = 0.49 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 241 LEFLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 119 L+ + L+ GK++ VI+ FP S+ +A+ GHA GK Sbjct: 350 LDEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHARGK 390
>COKA1_MOUSE (Q923P0) Collagen alpha-1(XX) chain (Fragment)| Length = 765 Score = 31.2 bits (69), Expect = 0.64 Identities = 19/48 (39%), Positives = 20/48 (41%) Frame = -2 Query: 326 GHPHICAALGDVLQEAPRAPAPVAQQGGPGVLGRAAQGRQAEDGDRLE 183 GHP G Q P P QQG PG GRA QG G + E Sbjct: 536 GHPGPKGEPGPPGQTGPEGPG--GQQGSPGTQGRAVQGPMGPPGAKGE 581
>RT4I1_HUMAN (Q8WWV3) Reticulon-4-interacting protein 1, mitochondrial precursor| (NOGO-interacting mitochondrial protein) Length = 396 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 241 LEFLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 119 L+ + L+ GK++ VI+ FP S +A+ GHA GK Sbjct: 350 LDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGK 390
>CSI2_YEAST (Q08054) Chitin synthase 3 complex protein CSI2| Length = 341 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Frame = +3 Query: 132 WPSILLCHALPASLKGNLESITVFSLPSLSSPTKNSRSALLGDRSRGTRRFLENVTQCSA 311 W ILL H + ++ +LPSLSS TK + S+ G S T L + S Sbjct: 9 WKVILLLHLFALQ---EFQLVSAANLPSLSSSTKAADSSSKGSSSAKTTTSLGKSSVTSK 65 Query: 312 DV----RMAXKLXVMSITLPASVS 371 DV + + IT AS S Sbjct: 66 DVSSSHNVTSSTKMPKITTSASTS 89
>ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive| cation channel 4, pituitary) (Acid-sensing ion channel 4) Length = 647 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -2 Query: 290 LQEAPRAPAPVAQQGGPGVLGRAAQGRQ--AEDGDRLEVPLE 171 L+E P P P+ + PG+L R QGR+ A R ++P+E Sbjct: 92 LEEQPLPPLPLGR--APGLLAREGQGREALASPSSRGQMPIE 131
>K1576_HUMAN (Q9HCJ6) Probable oxidoreductase KIAA1576 (EC 1.-.-.-)| Length = 419 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = -3 Query: 277 LVPLLLSPNKADL-----EFLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 119 L+ LL +A L E L+GL + K+K V+DS + L + +A Q D GK Sbjct: 318 LLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGK 375
>PROA_METMA (Q8PYP2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 447 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/76 (26%), Positives = 33/76 (43%) Frame = -3 Query: 349 IDITXNXSAILTSALHWVTFSKKRLVPLLLSPNKADLEFLVGLLKEGKLKTVIDSRFPLS 170 I++ S + AL + + + ++L N DLE+ L K GKL + R ++ Sbjct: 17 IELASVSSEVKNRALEAMAEALDKERKIILEANLKDLEYAAQLKKAGKLTQALVDRLKVT 76 Query: 169 DAGKAWQSSIDGHATG 122 D S +DG G Sbjct: 77 D------SKVDGMIAG 86
>PROA_METAC (Q9HHA1) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 447 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/76 (28%), Positives = 32/76 (42%) Frame = -3 Query: 349 IDITXNXSAILTSALHWVTFSKKRLVPLLLSPNKADLEFLVGLLKEGKLKTVIDSRFPLS 170 I+++ + AL + S R +L N DLE+ L K GKL + R ++ Sbjct: 17 IELSSVSEEVKNRALEAMAESLDRERKAILEANSKDLEYASELKKVGKLTQALVDRLKVT 76 Query: 169 DAGKAWQSSIDGHATG 122 D S IDG G Sbjct: 77 D------SKIDGMIAG 86
>RT4I1_BRARE (Q7T3C7) Reticulon-4-interacting protein 1 homolog, mitochondrial| precursor Length = 387 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = -3 Query: 259 SPNKADLEFLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 119 +P+ + L+ + ++ GK++ V++ F + +A+Q GHA GK Sbjct: 330 APSGSALDEVSEMVDAGKVRPVVEEVFSFAQVPEAFQKVEQGHARGK 376
>HSP76_SAGOE (Q9N1U2) Heat shock 70 kDa protein 6 (Hsp-70-related intracellular| vitamin D-binding protein) Length = 643 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 248 GGPGVLGRAAQGRQAEDGDRLEVPL 174 GGPGV G ++ G QA GDR P+ Sbjct: 614 GGPGVPGGSSCGAQARQGDRSTGPI 638
>PIWL2_MOUSE (Q8CDG1) Piwi-like protein 2| Length = 971 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/62 (27%), Positives = 26/62 (41%) Frame = -2 Query: 323 HPHICAALGDVLQEAPRAPAPVAQQGGPGVLGRAAQGRQAEDGDRLEVPLERRRQGVAKQ 144 HP C + +APR P + GP GR R+ ED P+++ G+ Sbjct: 15 HPSQCVRMPGCWPQAPRPLEPAWGRAGPA--GRGLVFRKPEDSSPPLQPVQKDSVGLVSM 72 Query: 143 YR 138 +R Sbjct: 73 FR 74
>Y6522_BACAN (Q9RN08) Hypothetical protein pXO2-23/BXB0022/GBAA_pXO2_0022| Length = 277 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%) Frame = +2 Query: 113 NNLTSGMAID-----TALPRLACVAQGEPRVDHRLQLAFLEQPDQE 235 NN+TS +A D T+L R + +QGE R D ++ LA + DQE Sbjct: 99 NNMTSLLANDSQTLLTSLQRASDRSQGELRADLKILLASVMGADQE 144
>YYBB_BACSU (P37502) Hypothetical protein yybB| Length = 220 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 89 RQSALHLNNNLTSGMAIDTALPRLACVAQGE 181 R+ ++ +N N+ SG ID P L C + GE Sbjct: 172 RRFSVDINENIDSGSIIDQIKPTLICSSHGE 202
>K1576_MOUSE (Q80TB8) Probable oxidoreductase KIAA1576 (EC 1.-.-.-)| Length = 417 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 241 LEFLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 119 +E L+GL + K+K V+DS + L + +A Q D GK Sbjct: 333 VEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGK 373
>AKR1_USTMA (Q4P6L3) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 844 Score = 28.1 bits (61), Expect = 5.4 Identities = 23/62 (37%), Positives = 26/62 (41%) Frame = -3 Query: 346 DITXNXSAILTSALHWVTFSKKRLVPLLLSPNKADLEFLVGLLKEGKLKTVIDSRFPLSD 167 D+ A LT A+HW RL LL+ KADL L KE KT D L Sbjct: 232 DVHKRDGAGLT-AMHWAVVKGNRLCIRLLADAKADL-----LAKEDSGKTPRDMAIELKS 285 Query: 166 AG 161 G Sbjct: 286 IG 287
>DONS_DROME (Q9VNA8) Downstream of son gene protein homolog| Length = 568 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 111 TTILPVAWPSILLCHALPASLKGNLESITVFSL 209 T + PVA+P + H +P S K L+ + FS+ Sbjct: 427 TLLSPVAFPKATMQHLVPRSKKVRLDGVDYFSI 459
>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 401 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 18/61 (29%) Frame = -2 Query: 284 EAPRAPAPVAQQGGP---------GVLGRAAQGRQAEDGDRLEVPLE---------RRRQ 159 E PR+P+ AQ P G++ AA G + ED D +++PL+ RRR+ Sbjct: 111 ELPRSPSQGAQGPAPRRRLMETMKGIV--AASGSETEDEDSMDIPLDLSSSAGSGKRRRR 168 Query: 158 G 156 G Sbjct: 169 G 169
>TGIF_HUMAN (Q15583) 5'-TG-3'-interacting factor (Homeobox protein TGIF)| Length = 401 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 18/61 (29%) Frame = -2 Query: 284 EAPRAPAPVAQQGGP---------GVLGRAAQGRQAEDGDRLEVPLE---------RRRQ 159 E PR+P+ AQ P G++ AA G + ED D +++PL+ RRR+ Sbjct: 111 ELPRSPSQGAQGPAPRRRLLETMKGIV--AASGSETEDEDSMDIPLDLSSSAGSGKRRRR 168 Query: 158 G 156 G Sbjct: 169 G 169
>GIDB_BIFLO (Q8G6J4) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 221 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 335 QFXGHPHICAALGDVLQEAPRAPAPVAQQGGP-GVLG 228 Q G P + LGD L + R A +A++G P G++G Sbjct: 4 QLQGSPVLAEVLGDALPKLERFHAKIAEEGEPRGLIG 40
>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3511 Score = 27.7 bits (60), Expect = 7.1 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 26/77 (33%) Frame = -2 Query: 275 RAPAPVAQQGGPGVLGRAAQGRQAEDG-----------------------DRLEVPLERR 165 R PAP+A PG L +A + +AE G E P + Sbjct: 1067 RTPAPLAPTRAPGPLLKAGEQPRAEPGRFAVVMPQVRGVSSFRPKGPAPVQPPEHPDQDP 1126 Query: 164 RQGVAKQ---YRWPCHW 123 QG A Q RWPC W Sbjct: 1127 EQGPAPQACSLRWPCLW 1143
>LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-binding protein,| isoform 1L precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1595 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 272 APAPVAQQGGPGVLGRAAQGRQAEDGDRLEVPLERRRQGV 153 A AP +QG V + Q Q+ G RL+V +++ QGV Sbjct: 128 AAAPFTKQGRQVVRSKVPQETQSGGGSRLQVHQKQQLQGV 167
>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 628 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = +2 Query: 71 VLYKHRRQSALHLNNNLTSGMAIDTALPRLACVAQGEPRVDHRLQLAFLEQPDQELQVRL 250 +L RR+SA+ ++ IDT++ R+ +G P +D + + RL Sbjct: 391 ILTARRRKSAMTMSE-------IDTSIDRVVAGLEGTPLIDSKSK-------------RL 430 Query: 251 VGRQEQGHE---ALLGERHPVQR 310 + E GH +LL PVQ+ Sbjct: 431 IAYHEVGHAIIGSLLEHHDPVQK 453
>PROA_METBF (Q46F78) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 447 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -3 Query: 265 LLSPNKADLEFLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATG 122 +L N DLE L K+GKL + R +SD S IDG G Sbjct: 45 ILDANAKDLEAAAELKKKGKLTQALVDRLKVSD------SKIDGMIAG 86
>MEF2D_XENLA (Q03413) Myocyte-specific enhancer factor 2D homolog (Serum| response factor-like protein 1) (SL-1) Length = 498 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%) Frame = +3 Query: 102 SISTTILPVAWPSILLCHALPASLKG-------NLESITVFSLPSLSSP 227 S++T ++ VA PS+L H LP S L S + SL + SSP Sbjct: 306 SLTTPVVSVATPSLLSHHGLPFSAMSTAYNTDYQLTSADLASLSTFSSP 354
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 251 VGRQEQGHEALLGERHPVQRRCEDGR 328 +G+ E L G+ HP RRC GR Sbjct: 267 LGKPESKRPVLGGKEHPYPRRCRTGR 292
>TRAI5_ECOLI (Q00192) Protein traI| Length = 747 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 236 VLGRAAQGRQAEDGDRLEVPLERRRQGVAKQYR 138 ++ RA +DGDRL+V E R+G+ + R Sbjct: 430 IIFRAGMSAVRDDGDRLQVSREATREGLQEALR 462
>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein| Length = 1556 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +2 Query: 179 EPRVDHRLQLAFLEQPDQELQVRLVGR-QEQGHEALLGERHPVQRRCEDGRXIXGDVY-N 352 +P V+ LQ +Q Q+ Q + + Q+ GH+ +HP+Q I G+ Y + Sbjct: 827 DPTVNGLLQQQQQQQQQQQQQQQQHQQLQQHGHQQQPHHQHPLQMLSNSQTSIAGNQYMS 886 Query: 353 SPG 361 SPG Sbjct: 887 SPG 889
>TRIP6_HUMAN (Q15654) Thyroid receptor-interacting protein 6 (TRIP6)| (OPA-interacting protein 1) (Zyxin-related protein 1) (ZRP-1) Length = 476 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -2 Query: 275 RAPAPVAQQGGPGVLGRAAQGRQAEDGDRLEVPLER 168 R P P A++ GV G A +GR E G +VPL + Sbjct: 217 REPGPGAKEEAAGVSGPAGRGRGGEHGP--QVPLSQ 250
>PRIM_SYNP7 (P74893) DNA primase (EC 2.7.7.-)| Length = 694 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = -2 Query: 359 RESYRHHXQFXGHPHICAALGDVLQEAPRAPAPVAQQGGPGVLGRAAQGRQAEDGDRLEV 180 +ES Q P A+L L E R PA + ++ G V R QG DRL + Sbjct: 153 QESTIQKFQLGYAPAQWASLATHLIEQKRFPADLVEEAGLVVARRNGQGYYDRFRDRLMI 212 Query: 179 PL 174 P+ Sbjct: 213 PI 214
>GCSP_RHILO (Q98LT6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 937 Score = 27.3 bits (59), Expect = 9.3 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 19/78 (24%) Frame = +3 Query: 96 QLSISTTILPVAWPSILLCH------------ALPASLKGNLESITVFSLPSLSSPTKNS 239 +L+ + ++PV+WPSI H A+ L+G L IT F SL P S Sbjct: 493 KLNAAAEMMPVSWPSIADLHPFAPASHSAGYRAMIGELEGWLSEITGFDAVSL-QPNAGS 551 Query: 240 RSALLG-------DRSRG 272 + G RSRG Sbjct: 552 QGEYAGLLAIRAYHRSRG 569
>SYFB_THIDA (Q3SK29) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 781 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -3 Query: 277 LVPLLLSPNKADLEFLVGLLKEGKLKTVIDSRFP 176 LV L L+PN+AD LVG+ +E T + R P Sbjct: 156 LVTLKLTPNRADCLSLVGIAREVGAITGAEVRIP 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,346,319 Number of Sequences: 219361 Number of extensions: 900600 Number of successful extensions: 3742 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3739 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
