ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MBP1_MAIZE (P28794) Antimicrobial peptide MBP-1 29 3.2
2CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alph... 29 3.2
3LGP1_MOUSE (Q99J23) Protein D11Lgp1 precursor 28 9.3

>MBP1_MAIZE (P28794) Antimicrobial peptide MBP-1|
          Length = 33

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 40  RRGPSRARAHCQRQHSASPWRTTRC 114
           R G    R  C R+H   PW T  C
Sbjct: 1   RSGRGECRRQCLRRHEGQPWETQEC 25



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>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2336

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 88   PSAVAGSGLEHGKGLVGAR 32
            PS  AGSGL HG+G  G R
Sbjct: 2080 PSTAAGSGLPHGEGSTGCR 2098



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>LGP1_MOUSE (Q99J23) Protein D11Lgp1 precursor|
          Length = 532

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 27  ASLAPTRPFPCSSPLPATALGIALAHDAMRPR 122
           A + PT P+PCS P    ALG      A  PR
Sbjct: 153 ACVTPTSPWPCSVPWLGHALGRVSPDGAKDPR 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,140,882
Number of Sequences: 219361
Number of extensions: 245698
Number of successful extensions: 1240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 80,573,946
effective HSP length: 17
effective length of database: 76,844,809
effective search space used: 1844275416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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