>Y816_METJA (Q58226) Hypothetical protein MJ0816|
          Length = 297

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 81  RHLYSISYISLVCCYIAYFGMPNLPKSKKNTSMDIRIK*NLL-LPIASNIGQPKLVLRKF 257
           + L+    I  +C Y  Y     +PK KKN    I  + +L  L I SNI   K +   F
Sbjct: 101 KSLFDDEVIQDICNYFLY---RKIPKEKKNIICLIHCQYDLYALDILSNIFNVKAITYDF 157

Query: 258 PAHLTMKT 281
           PA +  KT
Sbjct: 158 PALIPNKT 165

>ARNA_SALTI (Q8Z540) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 312 HHQLCQNLREFVGMQPVGIKCGSMVCLPYKQCCGTPHSR 428
           HH+LCQ  R+ +      +KCG++  +P ++   T + R
Sbjct: 162 HHKLCQAARQLLNSILPTMKCGNIPSVPQRESDATYYGR 200

>ARNA_SALPA (Q5PNA6) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 312 HHQLCQNLREFVGMQPVGIKCGSMVCLPYKQCCGTPHSR 428
           HH+LCQ  R+ +      +KCG++  +P ++   T + R
Sbjct: 162 HHKLCQAARQLLNSILPTMKCGNIPSVPQRESDATYYGR 200

>HUTM_BACSU (P42087) Putative histidine permease|
          Length = 475

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 9   SRSCIGLCPLFNKLAARVGFDTNQRHLYSISYISLVCCYIAYFGMPNLPKSKK 167
           S SCIGL            FD NQR         ++ CY+ Y    N+ K+KK
Sbjct: 422 SASCIGLA-----------FDPNQRIALFCGVPCIILCYLIYHFKRNVTKAKK 463


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,817,089
Number of Sequences: 219361
Number of extensions: 1994998
Number of successful extensions: 4927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4927
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)