ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20c01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470280.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1482 Score = 54.0 bits (27), Expect = 6e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 522 tcaaacttggaggacttgacaatgtatgatgtgggccttcagattacgacctgcaattgc 581 |||||||||||| ||||| ||||| || ||||| | ||| | ||||||||| ||||| | Sbjct: 1482 tcaaacttggagcacttggcaatggataatgtgagtcttgaaattacgacccgcaatggt 1423 Query: 582 tgaccacaagttttgccatcaaagacctgtgctgg 616 ||||||||||| || || ||||||||||||||| Sbjct: 1422 gaaccacaagttt-gctatgaaagacctgtgctgg 1389
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 6e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 522 tcaaacttggaggacttgacaatgtatgatgtgggccttcagattacgacctgcaattgc 581 |||||||||||| ||||| ||||| || ||||| | ||| | ||||||||| ||||| | Sbjct: 3650882 tcaaacttggagcacttggcaatggataatgtgagtcttgaaattacgacccgcaatggt 3650823 Query: 582 tgaccacaagttttgccatcaaagacctgtgctgg 616 ||||||||||| || || ||||||||||||||| Sbjct: 3650822 gaaccacaagttt-gctatgaaagacctgtgctgg 3650789
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence Length = 160738 Score = 54.0 bits (27), Expect = 6e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 522 tcaaacttggaggacttgacaatgtatgatgtgggccttcagattacgacctgcaattgc 581 |||||||||||| ||||| ||||| || ||||| | ||| | ||||||||| ||||| | Sbjct: 130495 tcaaacttggagcacttggcaatggataatgtgagtcttgaaattacgacccgcaatggt 130554 Query: 582 tgaccacaagttttgccatcaaagacctgtgctgg 616 |||||||| ||||| || ||||||||||||||| Sbjct: 130555 gaaccacaag-tttgctatgaaagacctgtgctgg 130588
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 6e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 522 tcaaacttggaggacttgacaatgtatgatgtgggccttcagattacgacctgcaattgc 581 |||||||||||| ||||| ||||| || ||||| | ||| | ||||||||| ||||| | Sbjct: 3650993 tcaaacttggagcacttggcaatggataatgtgagtcttgaaattacgacccgcaatggt 3650934 Query: 582 tgaccacaagttttgccatcaaagacctgtgctgg 616 |||||||| ||||| || ||||||||||||||| Sbjct: 3650933 gaaccacaag-tttgctatgaaagacctgtgctgg 3650900
>dbj|AK121310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112E08, full insert sequence Length = 2085 Score = 54.0 bits (27), Expect = 6e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 522 tcaaacttggaggacttgacaatgtatgatgtgggccttcagattacgacctgcaattgc 581 |||||||||||| ||||| ||||| || ||||| | ||| | ||||||||| ||||| | Sbjct: 1545 tcaaacttggagcacttggcaatggataatgtgagtcttgaaattacgacccgcaatggt 1486 Query: 582 tgaccacaagttttgccatcaaagacctgtgctgg 616 |||||||| ||||| || ||||||||||||||| Sbjct: 1485 gaaccacaag-tttgctatgaaagacctgtgctgg 1452
>dbj|AK071501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H18, full insert sequence Length = 1686 Score = 54.0 bits (27), Expect = 6e-04 Identities = 79/95 (83%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 522 tcaaacttggaggacttgacaatgtatgatgtgggccttcagattacgacctgcaattgc 581 |||||||||||| ||||| ||||| || ||||| | ||| | ||||||||| ||||| | Sbjct: 1615 tcaaacttggagcacttggcaatggataatgtgagtcttgaaattacgacccgcaatggt 1556 Query: 582 tgaccacaagttttgccatcaaagacctgtgctgg 616 ||||||||||| || || ||||||||||||||| Sbjct: 1555 gaaccacaagttt-gctatgaaagacctgtgctgg 1522
>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence Length = 191116 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 484 tacatttgaacatgtttccact 505 |||||||||||||||||||||| Sbjct: 120776 tacatttgaacatgtttccact 120797
>gb|AC146079.2| Pan troglodytes BAC clone RP43-46C10 from 7, complete sequence Length = 186437 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 tattaaatgtggcagcatggt 385 ||||||||||||||||||||| Sbjct: 7485 tattaaatgtggcagcatggt 7465
>ref|XM_384196.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04020.1) partial mRNA Length = 651 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 ctgctcatctcacaatgaaga 279 ||||||||||||||||||||| Sbjct: 275 ctgctcatctcacaatgaaga 255
>gb|AC073629.6| Homo sapiens BAC clone RP11-160E4 from 7, complete sequence Length = 34081 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 tattaaatgtggcagcatggt 385 ||||||||||||||||||||| Sbjct: 13101 tattaaatgtggcagcatggt 13081
>gb|AC112673.7| Homo sapiens chromosome 8, clone RP11-212F11, complete sequence Length = 167547 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 203 tctgctgcctatcgccagcaacatcggcc 231 |||||||||||| ||||||||| |||||| Sbjct: 66826 tctgctgcctatggccagcaacctcggcc 66854
>gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene, complete cds, alternatively spliced Length = 379048 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 203 tctgctgcctatcgccagcaacatcggcc 231 |||||||||||| ||||||||| |||||| Sbjct: 316639 tctgctgcctatggccagcaacctcggcc 316611
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 tcctctttcataaacatcatcaact 322 |||| |||||||||||||||||||| Sbjct: 1119676 tcctgtttcataaacatcatcaact 1119700
>ref|NM_126011.1| Arabidopsis thaliana ATRAD17 (RADIATION SENSITIVE) AT5G66130 (ATRAD17) mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cggaagtttcctgctcatct 268 |||||||||||||||||||| Sbjct: 40 cggaagtttcctgctcatct 59
>gb|AC115818.9| Mus musculus chromosome 1, clone RP23-433A12, complete sequence Length = 186895 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 acacaaaccaaagacacttg 89 |||||||||||||||||||| Sbjct: 85099 acacaaaccaaagacacttg 85118
>gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, complete sequence Length = 194261 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 agacctgtgctggtggccct 623 |||||||||||||||||||| Sbjct: 46460 agacctgtgctggtggccct 46441
>gb|AC163285.3| Mus musculus BAC clone RP23-379H2 from chromosome 16, complete sequence Length = 184951 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ctttgtcaaaatctcagaga 340 |||||||||||||||||||| Sbjct: 154534 ctttgtcaaaatctcagaga 154515
>emb|BX927376.15| Zebrafish DNA sequence from clone CH211-227M13 in linkage group 22, complete sequence Length = 158803 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tattccatttcttacataag 109 |||||||||||||||||||| Sbjct: 88779 tattccatttcttacataag 88798
>gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, complete sequence Length = 195122 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 atttgaacatgtttccacta 506 |||||||||||||||||||| Sbjct: 89128 atttgaacatgtttccacta 89109
>emb|AJ012333.1|BAP012333 Buchnera aphidicola plasmid pBTc2, trpE and trpG genes Length = 3037 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tattccatttcttacataag 109 |||||||||||||||||||| Sbjct: 1467 tattccatttcttacataag 1448
>emb|Z81365.1|HS97K10 Human DNA sequence from clone RP1-97K10 on chromosome X Contains the 5' end of the HS6ST2 gene for heparan sulfate 6-O-sulfotransferase 2, the USP26 gene for ubiquitin specific protease 26, the 5' end of a novel gene and a CpG island, complete sequence Length = 156197 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 381 atggtttgtcttccctacaagcaatgct 408 |||||||||||||||||| || |||||| Sbjct: 52308 atggtttgtcttccctactagtaatgct 52335
>gb|AC157787.6| Mus musculus chromosome 1, clone RP23-158A6, complete sequence Length = 199981 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 acacaaaccaaagacacttg 89 |||||||||||||||||||| Sbjct: 72976 acacaaaccaaagacacttg 72957
>gb|AC068909.31| Mus musculus BAC Clone 407f20 RPCI-23, complete sequence Length = 196383 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ctccacattccaggttctag 434 |||||||||||||||||||| Sbjct: 187050 ctccacattccaggttctag 187069
>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5 Length = 348178 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 tttcataaacatcatcaact 322 |||||||||||||||||||| Sbjct: 242135 tttcataaacatcatcaact 242116
>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence Length = 130127 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 tttgtcttccctacaagcaatgct 408 |||||||||||| ||||||||||| Sbjct: 85071 tttgtcttccctgcaagcaatgct 85048
>emb|BX000345.4|CNS08CDB Oryza sativa chromosome 12, . BAC OSJNBb0111J10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128678 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 5315 ttcttttaaaatctgagcatcttt 5292
>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence Length = 190779 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 atttgaacatgtttccacta 506 |||||||||||||||||||| Sbjct: 138233 atttgaacatgtttccacta 138214
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 6543786 ttcttttaaaatctgagcatcttt 6543809 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 6252299 ttcttttaaaatctgagcatcttt 6252322
>emb|BX831930.1|CNS09ZNO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH3ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2107 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cggaagtttcctgctcatct 268 |||||||||||||||||||| Sbjct: 49 cggaagtttcctgctcatct 68
>gb|AC156806.2| Pan troglodytes BAC clone CH251-342H5 from chromosome unknown, complete sequence Length = 172860 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ttcataaacatcatcaactt 323 |||||||||||||||||||| Sbjct: 49751 ttcataaacatcatcaactt 49732
>gb|AC156944.2| Pan troglodytes BAC clone CH251-396D8 from chromosome unknown, complete sequence Length = 173296 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ttcataaacatcatcaactt 323 |||||||||||||||||||| Sbjct: 3943 ttcataaacatcatcaactt 3924
>gb|AC016999.8| Homo sapiens BAC clone RP11-40B20 from 2, complete sequence Length = 93778 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 ccttcagattacgacctgca 576 |||||||||||||||||||| Sbjct: 24879 ccttcagattacgacctgca 24860
>gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, complete sequence Length = 155143 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 atttgaacatgtttccacta 506 |||||||||||||||||||| Sbjct: 80257 atttgaacatgtttccacta 80276
>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18 Length = 79899 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cggaagtttcctgctcatct 268 |||||||||||||||||||| Sbjct: 50583 cggaagtttcctgctcatct 50602
>dbj|AB030250.1| Arabidopsis thaliana mRNA for AtRAD17, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cggaagtttcctgctcatct 268 |||||||||||||||||||| Sbjct: 40 cggaagtttcctgctcatct 59
>gb|AC154427.2| Mus musculus BAC clone RP24-200D20 from 16, complete sequence Length = 163687 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ctttgtcaaaatctcagaga 340 |||||||||||||||||||| Sbjct: 72913 ctttgtcaaaatctcagaga 72894
>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence Length = 206641 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 agacctgtgctggtggccct 623 |||||||||||||||||||| Sbjct: 190260 agacctgtgctggtggccct 190241
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 6543661 ttcttttaaaatctgagcatcttt 6543684 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 6252174 ttcttttaaaatctgagcatcttt 6252197
>emb|AL954156.3|CNS08CCU Oryza sativa chromosome 12, . BAC OSJNBa0096K13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138508 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 96926 ttcttttaaaatctgagcatcttt 96949
>emb|AL831805.4|CNS08CAI Oryza sativa chromosome 12, . BAC OSJNBa0085J02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 166508 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 ttctttcaaaatctgagcatcttt 466 |||||| ||||||||||||||||| Sbjct: 86973 ttcttttaaaatctgagcatcttt 86950
>emb|BX004826.4| Mouse DNA sequence from clone RP24-243L17 on chromosome 4, complete sequence Length = 73626 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 aaagacctgtgctggtggcc 621 |||||||||||||||||||| Sbjct: 1901 aaagacctgtgctggtggcc 1920
>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3, complete sequence Length = 158520 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gtcaaaatctcagagaattt 344 |||||||||||||||||||| Sbjct: 146188 gtcaaaatctcagagaattt 146207
>dbj|AB249776.1| Xenopus tropicalis DNA for bitter taste receptor, complete cds, clone: Xetr-T2R8 Length = 960 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 tgggccttcagattacgacc 572 |||||||||||||||||||| Sbjct: 179 tgggccttcagattacgacc 198
>gb|AC068908.21| Mus musculus BAC Clone 389o18 RPCI-23, complete sequence Length = 198576 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ctccacattccaggttctag 434 |||||||||||||||||||| Sbjct: 119670 ctccacattccaggttctag 119689
>emb|AL772261.5| Mouse DNA sequence from clone RP23-276J11 on chromosome 4, complete sequence Length = 191041 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 aaagacctgtgctggtggcc 621 |||||||||||||||||||| Sbjct: 100 aaagacctgtgctggtggcc 81
>gb|AC171203.1| Mus musculus BAC clone RP24-260O23 from chromosome 9, complete sequence Length = 171374 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 590 agttttgccatcaaagacctgtgc 613 |||||||||||||||||| ||||| Sbjct: 106454 agttttgccatcaaagacatgtgc 106477
>dbj|AB057804.1| Homo sapiens gene for REIC, complete cds Length = 47100 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 atttgaacatgtttccacta 506 |||||||||||||||||||| Sbjct: 6848 atttgaacatgtttccacta 6829 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,832,840 Number of Sequences: 3902068 Number of extensions: 5832840 Number of successful extensions: 110691 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110490 Number of HSP's gapped (non-prelim): 195 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
