ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 129 1e-26
2emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4,... 129 1e-26
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
4dbj|AK060196.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
5gb|BT018114.1| Zea mays clone EL01N0553G12.c mRNA sequence 127 5e-26
6gb|AY105694.1| Zea mays PCO071849 mRNA sequence 127 5e-26
7ref|XM_472997.1| Oryza sativa (japonica cultivar-group), predic... 125 2e-25
8gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chrom... 44 0.55
9emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 44 0.55
10gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 44 0.55
11gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence 44 0.55
12dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 44 0.55
13gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 44 0.55
14gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 44 0.55
15gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 44 0.55
16gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 44 0.55
17dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 44 0.55
18dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 44 0.55
19emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in... 44 0.55
20emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 44 0.55
21emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 44 0.55
22gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome... 42 2.2
23gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, co... 42 2.2
24gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, com... 42 2.2
25ref|XM_746966.1| Aspergillus fumigatus Af293 ATP-dependent RNA h... 42 2.2
26gb|AC122255.2| Mus musculus BAC clone RP23-178F22 from chromosom... 42 2.2
27gb|AC119881.10| Mus musculus chromosome 3, clone RP24-428N8, com... 42 2.2
28emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on ch... 42 2.2
29gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 8.6
30gb|AE006294.1| Lactococcus lactis subsp. lactis IL1403 section 5... 40 8.6
31gb|AC166347.2| Mus musculus BAC clone RP24-87G12 from chromosome... 40 8.6
32gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Can... 40 8.6
33emb|AL079295.1|HS106I20 Human DNA sequence from clone RP1-106I20... 40 8.6
34emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in li... 40 8.6
35emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.6
36emb|CR846095.3| Zebrafish DNA sequence from clone DKEY-209E11 in... 40 8.6
37gb|AC008494.8| Homo sapiens chromosome 5 clone CTC-428G20, compl... 40 8.6
38gb|AC094095.2| Homo sapiens chromosome 5 clone RP11-115D4, compl... 40 8.6
39gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3... 40 8.6
40gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Can... 40 8.6
41gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Canc... 40 8.6
42emb|BX890619.6| Zebrafish DNA sequence from clone CH211-288M1, c... 40 8.6
43gb|AC008585.4|AC008585 Homo sapiens chromosome 5 clone CTC-568C6... 40 8.6
44dbj|BS000059.1| Pan troglodytes chromosome 22 clone:RP43-022N17,... 40 8.6
45dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.6
46gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 40 8.6
47gb|AC141891.3| Mus musculus BAC clone RP23-378A8 from 6, complet... 40 8.6
48gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosom... 40 8.6
49dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 8.6 
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
              complete sequence
          Length = 146313

 Score =  129 bits (65), Expect = 1e-26
 Identities = 209/257 (81%)
 Strand = Plus / Minus

                                                                          
Query: 372    tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 431
              |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 123164 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 123105

                                                                          
Query: 432    gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 491
              || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 123104 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 123045

                                                                          
Query: 492    ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctta 551
              ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| ||||| 
Sbjct: 123044 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactcttc 122985

                                                                          
Query: 552    gaagtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatcca 611
              ||||| | | ||||| |||  || |  |||||||| ||||| || || ||||||||||||
Sbjct: 122984 gaagttgcgctcttgctgcatgtaccatggctagtggaaggacctacatcatttaatcca 122925

                               
Query: 612    gtctccagtgcccggac 628
              |||||||  ||||||||
Sbjct: 122924 gtctccaaagcccggac 122908
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>emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30,
             complete sequence
          Length = 88547

 Score =  129 bits (65), Expect = 1e-26
 Identities = 209/257 (81%)
 Strand = Plus / Minus

                                                                         
Query: 372   tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 431
             |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 18678 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 18619

                                                                         
Query: 432   gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 491
             || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 18618 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 18559

                                                                         
Query: 492   ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctta 551
             ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| ||||| 
Sbjct: 18558 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactcttc 18499

                                                                         
Query: 552   gaagtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatcca 611
             ||||| | | ||||| |||  || |  |||||||| ||||| || || ||||||||||||
Sbjct: 18498 gaagttgcgctcttgctgcatgtaccatggctagtggaaggacctacatcatttaatcca 18439

                              
Query: 612   gtctccagtgcccggac 628
             |||||||  ||||||||
Sbjct: 18438 gtctccaaagcccggac 18422
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  129 bits (65), Expect = 1e-26
 Identities = 209/257 (81%)
 Strand = Plus / Minus

                                                                            
Query: 372      tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 431
                |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 24563533 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 24563474

                                                                            
Query: 432      gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 491
                || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 24563473 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 24563414

                                                                            
Query: 492      ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctta 551
                ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| ||||| 
Sbjct: 24563413 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactcttc 24563354

                                                                            
Query: 552      gaagtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatcca 611
                ||||| | | ||||| |||  || |  |||||||| ||||| || || ||||||||||||
Sbjct: 24563353 gaagttgcgctcttgctgcatgtaccatggctagtggaaggacctacatcatttaatcca 24563294

                                 
Query: 612      gtctccagtgcccggac 628
                |||||||  ||||||||
Sbjct: 24563293 gtctccaaagcccggac 24563277
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>dbj|AK060196.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F04, full
            insert sequence
          Length = 1838

 Score =  129 bits (65), Expect = 1e-26
 Identities = 209/257 (81%)
 Strand = Plus / Minus

                                                                        
Query: 372  tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 431
            |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 1421 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 1362

                                                                        
Query: 432  gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 491
            || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 1361 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 1302

                                                                        
Query: 492  ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctta 551
            ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| ||||| 
Sbjct: 1301 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactcttc 1242

                                                                        
Query: 552  gaagtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatcca 611
            ||||| | | ||||| |||  || |  |||||||| ||||| || || ||||||||||||
Sbjct: 1241 gaagttgcgctcttgctgcatgtaccatggctagtggaaggacctacatcatttaatcca 1182

                             
Query: 612  gtctccagtgcccggac 628
            |||||||  ||||||||
Sbjct: 1181 gtctccaaagcccggac 1165
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>gb|BT018114.1| Zea mays clone EL01N0553G12.c mRNA sequence
          Length = 1058

 Score =  127 bits (64), Expect = 5e-26
 Identities = 208/256 (81%)
 Strand = Plus / Minus

                                                                       
Query: 373 gctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatatg 432
           ||||||| || ||| | ||||| |||||||||||  |||| ||| |||||||| ||||||
Sbjct: 672 gctatcgatgctggcgatcacaggcctggcaggctctggcagatttggggtttgcatatg 613

                                                                       
Query: 433 tacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgatt 492
           | |||||||| || ||||| ||||| ||||| |||||||| ||| | |||| ||| ||||
Sbjct: 612 tgcactgatcgcatgtccagatgttactatcatccacacctcgggttgagccgccagatt 553

                                                                       
Query: 493 tggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctcttag 552
           |||| | |   |  |||| |||||||||||||||||| || |||||||| |||||||| |
Sbjct: 552 tggaactgctgcttgatgccctgttcttgccactcttacttttaccaccgaggctcttgg 493

                                                                       
Query: 553 aagtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatccag 612
           |||| | | | ||| |||  ||||  |||||||| ||||| || || |||||||||||||
Sbjct: 492 aagttgcgcttttgctgcatgtgccatggctagtggaagggcctacatcatttaatccag 433

                           
Query: 613 tctccagtgcccggac 628
           | ||||| ||||||||
Sbjct: 432 tttccagagcccggac 417



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                 
Query: 177 cagtcagtggacaaacaatgcag-atacacgaaaacct 213
           |||||||| |||||||||| ||| ||||||||||||||
Sbjct: 847 cagtcagtcgacaaacaatccaggatacacgaaaacct 810
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>gb|AY105694.1| Zea mays PCO071849 mRNA sequence
          Length = 547

 Score =  127 bits (64), Expect = 5e-26
 Identities = 208/256 (81%)
 Strand = Plus / Minus

                                                                       
Query: 373 gctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatatg 432
           ||||||| || ||||| |||||||||||||||||  |||| ||| |||||||| ||||||
Sbjct: 291 gctatcgatgctggtgatcacaagcctggcaggctctggcagatttggggtttgcatatg 232

                                                                       
Query: 433 tacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgatt 492
           | |||||||| |||||||| ||||| ||||| |||||||| ||||| ||||  || || |
Sbjct: 231 tgcactgatcgcacgtccatatgttactatcatccacacctcggcttgagccacccgact 172

                                                                       
Query: 493 tggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctcttag 552
           |||| | ||  |  ||||  | ||||||||||||||| || |||||||| |||||||| |
Sbjct: 171 tggaactggtgcttgatgctcggttcttgccactcttacttttaccaccgaggctcttcg 112

                                                                       
Query: 553 aagtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatccag 612
           |||| | | | ||| |||  || |  |||||||| ||||| || || |||||||||||||
Sbjct: 111 aagttgcgcttttgctgcatgtaccatggctagtggaaggacctacatcatttaatccag 52

                           
Query: 613 tctccagtgcccggac 628
           | ||||| ||||||||
Sbjct: 51  tttccagagcccggac 36



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 179 gtcagtggacaaacaatgc-agatacacgaaaacct 213
           |||||| |||||||||| | ||||||||||||||||
Sbjct: 458 gtcagtcgacaaacaatccgagatacacgaaaacct 423
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>ref|XM_472997.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score =  125 bits (63), Expect = 2e-25
 Identities = 207/255 (81%)
 Strand = Plus / Minus

                                                                        
Query: 374  ctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatatgt 433
            |||||| || |||| || |||||||||||||    |||| |||||||||||  |||||||
Sbjct: 1770 ctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatatgt 1711

                                                                        
Query: 434  acactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgattt 493
             ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |||
Sbjct: 1710 gcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtttt 1651

                                                                        
Query: 494  ggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctcttaga 553
            ||||| || || |||||  ||| |||||| |||||| || ||||  ||||| ||||| ||
Sbjct: 1650 ggagctggtactggatgctctgctcttgctactcttacttttactgccaagactcttcga 1591

                                                                        
Query: 554  agtggtgttcttgttgccagtgctttggctagtagaaggtccaacgtcatttaatccagt 613
            ||| | | ||||| |||  || |  |||||||| ||||| || || ||||||||||||||
Sbjct: 1590 agttgcgctcttgctgcatgtaccatggctagtggaaggacctacatcatttaatccagt 1531

                           
Query: 614  ctccagtgcccggac 628
            |||||  ||||||||
Sbjct: 1530 ctccaaagcccggac 1516
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>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
              sequence
          Length = 176398

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 526    tcttgctcttaccaccaaggct 547
              ||||||||||||||||||||||
Sbjct: 140341 tcttgctcttaccaccaaggct 140362
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1499622 ttagcaactatgtttgcatatg 1499601
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 526    tcttgctcttaccaccaaggct 547
              ||||||||||||||||||||||
Sbjct: 117010 tcttgctcttaccaccaaggct 117031
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>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence
          Length = 184706

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 526    tcttgctcttaccaccaaggct 547
              ||||||||||||||||||||||
Sbjct: 130520 tcttgctcttaccaccaaggct 130499
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1548875 ttagcaactatgtttgcatatg 1548854
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1514025 ttagcaactatgtttgcatatg 1514004
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1407360 ttagcaactatgtttgcatatg 1407339
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1490738 ttagcaactatgtttgcatatg 1490717
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>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 526    tcttgctcttaccaccaaggct 547
              ||||||||||||||||||||||
Sbjct: 124482 tcttgctcttaccaccaaggct 124503
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1473916 ttagcaactatgtttgcatatg 1473895
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1472463 ttagcaactatgtttgcatatg 1472442
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>emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in linkage group 24,
             complete sequence
          Length = 80334

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 275   gcaactatgtttgcatatgttg 296
             ||||||||||||||||||||||
Sbjct: 77974 gcaactatgtttgcatatgttg 77953
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1537792 ttagcaactatgtttgcatatg 1537771
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 272     ttagcaactatgtttgcatatg 293
               ||||||||||||||||||||||
Sbjct: 1425665 ttagcaactatgtttgcatatg 1425644
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>gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome 13, complete sequence
          Length = 190600

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 515    gttcttgccactcttgctctt 535
              |||||||||||||||||||||
Sbjct: 150455 gttcttgccactcttgctctt 150435
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>gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, complete sequence
          Length = 190817

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   aaatatccttagcaactatgt 284
             |||||||||||||||||||||
Sbjct: 60295 aaatatccttagcaactatgt 60315
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>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence
          Length = 212083

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 aaatatccttagcaactatgt 284
           |||||||||||||||||||||
Sbjct: 322 aaatatccttagcaactatgt 302
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>ref|XM_746966.1| Aspergillus fumigatus Af293 ATP-dependent RNA helicase Dbp1
           (Afu4g07660) partial mRNA
          Length = 2025

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 330 ctcgatctgacggagctgaga 350
           |||||||||||||||||||||
Sbjct: 969 ctcgatctgacggagctgaga 949
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>gb|AC122255.2| Mus musculus BAC clone RP23-178F22 from chromosome 3, complete sequence
          Length = 185132

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 560   gttcttgttgccagtgctttg 580
             |||||||||||||||||||||
Sbjct: 58304 gttcttgttgccagtgctttg 58284
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>gb|AC119881.10| Mus musculus chromosome 3, clone RP24-428N8, complete sequence
          Length = 167095

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 560    gttcttgttgccagtgctttg 580
              |||||||||||||||||||||
Sbjct: 114919 gttcttgttgccagtgctttg 114899
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>emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on chromosome 13, complete
             sequence
          Length = 218075

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   gttcttgccactcttgctctt 535
             |||||||||||||||||||||
Sbjct: 72637 gttcttgccactcttgctctt 72617
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    gacctgagaggattcttctc 332
              ||||||||||||||||||||
Sbjct: 402164 gacctgagaggattcttctc 402145
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>gb|AE006294.1| Lactococcus lactis subsp. lactis IL1403 section 56 of 218 of the
            complete genome
          Length = 10292

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aacagcattacaaaaagaaa 53
            ||||||||||||||||||||
Sbjct: 7300 aacagcattacaaaaagaaa 7319
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>gb|AC166347.2| Mus musculus BAC clone RP24-87G12 from chromosome 6, complete sequence
          Length = 193181

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aaacaaaacagagttacaga 123
             ||||||||||||||||||||
Sbjct: 59338 aaacaaaacagagttacaga 59319
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>gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tagcaactatgtttgcatat 292
              ||||||||||||||||||||
Sbjct: 104209 tagcaactatgtttgcatat 104228
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>emb|AL079295.1|HS106I20 Human DNA sequence from clone RP1-106I20 on chromosome 22, complete
            sequence
          Length = 149321

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   acaaaaagaaaagaacttgt 62
            ||||||||||||||||||||
Sbjct: 6185 acaaaaagaaaagaacttgt 6166
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>emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in linkage group 14 Contains
             part of a novel gene similar to ATP8B1 (ATPase, Class I,
             type 8B, member 1), part of a novel gene similar to MCF2
             (MCF.2 cell line derived transforming sequence) and two
             CpG islands, complete sequence
          Length = 174521

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aaaacagagttacagatata 127
             ||||||||||||||||||||
Sbjct: 57932 aaaacagagttacagatata 57951
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>emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BAC clone F7M19
          Length = 99291

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   agctgagatgttaaacaagg 362
             ||||||||||||||||||||
Sbjct: 41355 agctgagatgttaaacaagg 41336
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>emb|CR846095.3| Zebrafish DNA sequence from clone DKEY-209E11 in linkage group 14,
             complete sequence
          Length = 50472

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaaacagagttacagatata 127
             ||||||||||||||||||||
Sbjct: 32436 aaaacagagttacagatata 32417
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>gb|AC008494.8| Homo sapiens chromosome 5 clone CTC-428G20, complete sequence
          Length = 181800

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 36    cagcattacaaaaagaaaagaact 59
             ||||||||||||| ||||||||||
Sbjct: 64985 cagcattacaaaacgaaaagaact 65008
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>gb|AC094095.2| Homo sapiens chromosome 5 clone RP11-115D4, complete sequence
          Length = 162282

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     cagcattacaaaaagaaaagaact 59
              ||||||||||||| ||||||||||
Sbjct: 118295 cagcattacaaaacgaaaagaact 118318
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>gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3, complete sequence
          Length = 180681

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   tagcaactatgtttgcatat 292
             ||||||||||||||||||||
Sbjct: 66006 tagcaactatgtttgcatat 65987
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>gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 119043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    caaaacagagttacagatat 126
              ||||||||||||||||||||
Sbjct: 118319 caaaacagagttacagatat 118338
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>gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175946

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    caaaacagagttacagatat 126
              ||||||||||||||||||||
Sbjct: 167702 caaaacagagttacagatat 167683
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>emb|BX890619.6| Zebrafish DNA sequence from clone CH211-288M1, complete sequence
          Length = 141754

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aaaacagagttacagatata 127
             ||||||||||||||||||||
Sbjct: 71715 aaaacagagttacagatata 71734
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>gb|AC008585.4|AC008585 Homo sapiens chromosome 5 clone CTC-568C6, complete sequence
          Length = 86152

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 36   cagcattacaaaaagaaaagaact 59
            ||||||||||||| ||||||||||
Sbjct: 1828 cagcattacaaaacgaaaagaact 1851
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>dbj|BS000059.1| Pan troglodytes chromosome 22 clone:RP43-022N17, map 22, complete
             sequences
          Length = 127718

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   aatatccttagcaactatgt 284
             ||||||||||||||||||||
Sbjct: 44638 aatatccttagcaactatgt 44657
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>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    aatatccttagcaactatgt 284
              ||||||||||||||||||||
Sbjct: 104227 aatatccttagcaactatgt 104246
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>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    acatatgtacactgatcaca 445
              ||||||||||||||||||||
Sbjct: 205357 acatatgtacactgatcaca 205376
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>gb|AC141891.3| Mus musculus BAC clone RP23-378A8 from 6, complete sequence
          Length = 152261

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aaacaaaacagagttacaga 123
              ||||||||||||||||||||
Sbjct: 101336 aaacaaaacagagttacaga 101355
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>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence
          Length = 197402

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   acatatgtacactgatcaca 445
             ||||||||||||||||||||
Sbjct: 52260 acatatgtacactgatcaca 52279
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>dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B732H1,
              LL56-APP region, complete sequence
          Length = 204699

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    aatatccttagcaactatgt 284
              ||||||||||||||||||||
Sbjct: 187647 aatatccttagcaactatgt 187666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,926,566
Number of Sequences: 3902068
Number of extensions: 5926566
Number of successful extensions: 106409
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106106
Number of HSP's gapped (non-prelim): 292
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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