ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSA_MOUSE (Q11011) Puromycin-sensitive aminopeptidase (EC 3.4.11... 32 1.6
2PSA_HUMAN (P55786) Puromycin-sensitive aminopeptidase (EC 3.4.11... 32 1.6
3RS15F_ARATH (Q9FML6) 40S ribosomal protein S15-6 31 2.7
4FCPE_MACPY (Q40301) Fucoxanthin-chlorophyll a-c binding protein ... 30 4.6
5NU2M_NEUCR (Q35140) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 6.0
6MRE11_MACFA (Q60HE6) Double-strand break repair protein MRE11A (... 30 6.0
7GPR39_MOUSE (Q5U431) Probable G-protein coupled receptor 39 30 7.9
8IMMA_CITFR (P05701) Colicin-A immunity protein (Microcin-A immun... 30 7.9

>PSA_MOUSE (Q11011) Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)|
          Length = 920

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 463 VAHPDELDEEFDTFPTSKSPDLIRMRYD 380
           V HP E+DE FD    SK   +IRM +D
Sbjct: 424 VGHPSEVDEIFDAISYSKGASVIRMLHD 451



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>PSA_HUMAN (P55786) Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)|
          Length = 919

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 463 VAHPDELDEEFDTFPTSKSPDLIRMRYD 380
           V HP E+DE FD    SK   +IRM +D
Sbjct: 423 VGHPSEVDEIFDAISYSKGASVIRMLHD 450



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>RS15F_ARATH (Q9FML6) 40S ribosomal protein S15-6|
          Length = 160

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 539 LIGLWNYRFRATCPTTYEHKDILCGCCSSRRA 444
           +IG +   F  TC     H+  +CGCC  RR+
Sbjct: 122 MIGHYLAEFSMTCKKVNHHRPRICGCCCFRRS 153



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>FCPE_MACPY (Q40301) Fucoxanthin-chlorophyll a-c binding protein E, chloroplast|
           precursor
          Length = 212

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -3

Query: 421 PTSKSPDLIRMRYDRLRHVA---GRIQ--TVVGDIATQGERLQSLLSWRDPRATA 272
           P     D  + R+DRLR+V    GRI    VVG I  Q  RL  +LS+++  A A
Sbjct: 51  PLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFA 105



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>NU2M_NEUCR (Q35140) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 583

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 277 TAMFLLFC-LFTAIILYITPFQVIALCLGFFWMRHPRFRHKVPAA 146
           T +F +F  L + +IL +T F  I     F+ MRHPRF +K P A
Sbjct: 64  TQVFQIFIFLISILILQLTSFDPIKK---FYIMRHPRFINKWPRA 105



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>MRE11_MACFA (Q60HE6) Double-strand break repair protein MRE11A (MRE11 homolog|
           1) (MRE11 meiotic recombination 11 homolog A)
          Length = 707

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 499 PPHMNTRISYADVAHPDELDEEFDTFPTSKSPD 401
           P    T  +Y++V   DE DEE D FPT+   D
Sbjct: 630 PSRNVTTKNYSEVIEVDESDEEEDVFPTTSKTD 662



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>GPR39_MOUSE (Q5U431) Probable G-protein coupled receptor 39|
          Length = 456

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 383 IPHPNQVRALGGWERVKFLIKLVWMSNIRIRYPCVHMWWDTWPGTDNSTTQSRTC 547
           I HP + +A+ G  +VK LI  VW+++  +  P +      +P  +  T +   C
Sbjct: 137 ICHPFKYKAVSGPRQVKLLIGFVWVTSALVALPLLFAMGIEYPLVNVPTHKGLNC 191



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>IMMA_CITFR (P05701) Colicin-A immunity protein (Microcin-A immunity protein)|
          Length = 178

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 334 IATQGERLQSLLSWRDPRATAMFLLFCL---FTAIILYITPFQV 212
           IAT  E L S+ S  +P  T +  ++C    F A+ILYI  F++
Sbjct: 48  IATSTENLPSITSSYNPLMTKVMDIYCKTAPFLALILYILTFKI 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,783,427
Number of Sequences: 219361
Number of extensions: 2028257
Number of successful extensions: 6215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6210
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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