ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal20b04 |
|---|---|
| Clone Library Name | barley_pub |
>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC| 2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related kinase 3.16) Length = 444 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/39 (58%), Positives = 31/39 (79%) Frame = -3 Query: 377 VCAXVFELGPSLHVVELRKSHGDTAVYXQLCDRISSDLG 261 V A VFE+ PSL+VVELRKS+GD+ +Y QL +R+ D+G Sbjct: 396 VTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERLLKDVG 434
>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)| Length = 449 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = -3 Query: 377 VCAXVFELGPSLHVVELRKSHGDTAVYXQLCDRISSDL 264 V VF++ PSLHVVEL+K+ GDT + + +S+ L Sbjct: 394 VATEVFQVAPSLHVVELKKAKGDTLEFQKFYRTLSTQL 431
>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC| 2.7.11.1) (Serine/threonine-protein kinase ATPK10) (SOS2-like protein kinase PKS3) (SOS-interacting protein 2) (SNF1-related kinase 3.1) Length = 421 Score = 36.2 bits (82), Expect = 0.019 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = -3 Query: 380 LVCAXVFELGPSLHVVELRKSHGDTAVYXQL 288 +V A VFE+ PS H+V L+KS GDTA Y ++ Sbjct: 374 VVEAEVFEIAPSYHMVVLKKSGGDTAEYKRV 404
>DC4C_ACIAD (P20370) 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) (CMD)| Length = 134 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +3 Query: 234 RPHPKNLVNSQVTRDPVAELXVHCSVTMGLP 326 R H + N+ VT+D + EL +HCS+ GLP Sbjct: 78 RMHLRACFNNGVTKDELKELILHCSLYAGLP 108
>FLO9_YEAST (P39712) Flocculation protein FLO9 precursor| Length = 1322 Score = 32.0 bits (71), Expect = 0.37 Identities = 25/99 (25%), Positives = 41/99 (41%) Frame = +3 Query: 30 IISSXXLDSDVYDPSPYTTIVIXNQ*TTMVLASYNIMSVGVPTAQHSSQGNQWXXGSAVQ 209 + SS S V S ++ VI + T+ + S + S +PT+ +S ++ GSA Sbjct: 912 VTSSLVTSSPVISSSFISSPVISSTTTSASILSESSKSSVIPTSSSTSGSSESETGSASS 971 Query: 210 ARXXXXXXRPHPKNLVNSQVTRDPVAELXVHCSVTMGLP 326 A PK+ +S + PV +T LP Sbjct: 972 ASSSSSISSESPKSTYSSS-SLPPVTSATTSQEITSSLP 1009
>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC| 2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein) Length = 446 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 377 VCAXVFELGPSLHVVELRKSHGDTAVYXQLCDRISSDL 264 V ++E+ PSL +V++RK+ G+T Y + ++ S L Sbjct: 387 VVIEIYEVAPSLFMVDVRKAAGETLEYHKFYKKLCSKL 424
>FLO5_YEAST (P38894) Flocculation protein FLO5 precursor (Flocculin-5)| Length = 1075 Score = 29.3 bits (64), Expect = 2.4 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Frame = +3 Query: 30 IISSXXLDSDVYDPSPYTTIVIXNQ*TTMV-LASYNIMSVGVPTAQHSSQGNQWXXGSAV 206 +ISS S V S ++ VI + TT + S + S +PT+ +S ++ SA Sbjct: 672 VISSSVTSSLVTSSSFISSSVISSSTTTSTSIFSESSTSSVIPTSSSTSGSSESKTSSAS 731 Query: 207 QARXXXXXXRPHPKNLVNSQVTRDPVAELXVHCSVTMGLP 326 + PK+ NS + PV LP Sbjct: 732 SSSSSSSISSESPKSPTNSSSSLPPVTSATTGQETASSLP 771
>SPON1_RAT (P35446) Spondin-1 precursor (F-spondin)| Length = 807 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 286 QSCXYTAVSPWDFLSSTTCREG 351 ++C Y+ SPW SS+TC +G Sbjct: 441 ETCIYSNWSPWSACSSSTCEKG 462
>SPON1_MOUSE (Q8VCC9) Spondin-1 precursor (F-spondin)| Length = 807 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 286 QSCXYTAVSPWDFLSSTTCREG 351 ++C Y+ SPW SS+TC +G Sbjct: 441 ETCIYSNWSPWSACSSSTCEKG 462
>SPON1_CHICK (Q9W770) Spondin-1 precursor (F-spondin)| Length = 802 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 286 QSCXYTAVSPWDFLSSTTCREG 351 ++C Y+ SPW SS+TC +G Sbjct: 436 ETCIYSNWSPWSACSSSTCEKG 457
>CRIS2_HUMAN (P16562) Cysteine-rich secretory protein 2 precursor (CRISP-2)| (Testis-specific protein TPX-1) Length = 243 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +2 Query: 203 CPSSGGCRRRATPSQKSCXFPGHSRSCRRAVCTLQCHH 316 CP+ R+ TP Q+ G C + +CT C + Sbjct: 170 CPAGNNMNRKNTPYQQGTPCAGCPDDCDKGLCTNSCQY 207
>KRA98_HUMAN (Q9BYQ0) Keratin-associated protein 9-8 (Keratin-associated protein| 9.8) (Ultrahigh sulfur keratin-associated protein 9.8) Length = 159 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Frame = +2 Query: 179 QPVVXRLCC-PS--SGGCRRRATPSQKSCXFP-GHSRSCRRAVCTLQCHHGTS 325 QP+ CC PS S C + Q SC G S SC C C+H T+ Sbjct: 58 QPICVTSCCQPSCCSTPCCQPTCCGQTSCGSSCGQSSSCAPVYCRRTCYHPTT 110
>SPON1_HUMAN (Q9HCB6) Spondin-1 precursor (F-spondin) (Vascular smooth muscle| cell growth-promoting factor) Length = 807 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 286 QSCXYTAVSPWDFLSSTTCREG 351 ++C Y+ SPW SS+TC +G Sbjct: 441 ETCIYSNWSPWSACSSSTCDKG 462
>SPON1_BOVIN (Q9GLX9) Spondin-1 precursor (F-spondin) (Vascular smooth muscle| cell growth-promoting factor) Length = 807 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 286 QSCXYTAVSPWDFLSSTTCREG 351 ++C Y+ SPW SS+TC +G Sbjct: 441 ETCIYSNWSPWSACSSSTCDKG 462
>LCE3A_HUMAN (Q5TA76) Late cornified envelope protein 3A (Late envelope protein| 13) Length = 89 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 182 PVVXRLCCPSSGGCRRRATPSQKSCXFPGHSRSCRRA 292 P C PSSGGC S++SC H CRR+ Sbjct: 26 PPASSSCAPSSGGC---GPSSERSCCLSHH--RCRRS 57
>HHIP_HUMAN (Q96QV1) Hedgehog-interacting protein precursor (HHIP) (HIP)| Length = 700 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 194 RLCCPSSGGCRRRATPSQKSCXFPGHSRS-CRRAVCTLQCHHG 319 RLC +G C TP+ K C PG CR A C C HG Sbjct: 610 RLC--RNGYC----TPTGKCCCSPGWEGDFCRTAKCEPACRHG 646
>PARC_BORBU (O51066) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 626 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 317 HGDTAVYXQLCDRISSDLGIXKIFGMGSLF 228 HGDT++Y L + + DL I K G+LF Sbjct: 66 HGDTSIYEALVNIANKDLFIEKQGNFGNLF 95
>SPON1_XENLA (P35447) Spondin-1 precursor (F-spondin)| Length = 803 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 286 QSCXYTAVSPWDFLSSTTCREG 351 ++C Y+ SPW SS TC +G Sbjct: 435 ETCIYSNWSPWSACSSATCDKG 456
>ENV_HV1RH (P04579) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 865 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -1 Query: 376 SVPRCLSLAPLCMLWSLGSPMVTLQCTXSSATGSRVT 266 S+ C+ L PLC VTL CT ++ G+ VT Sbjct: 114 SLKPCVKLTPLC---------VTLNCTDANLNGTNVT 141
>MT1B_SHEEP (P09577) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| Length = 61 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +2 Query: 203 CPSSGGCRRRATPSQKSCXFPGHSRSCRRAVCTLQC 310 CP+SG C + + K+C P +SC + C + C Sbjct: 7 CPTSGSCSCAGSCTCKACRCPSCKKSC-CSCCPVGC 41
>SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chromosome| segregation protein cut14) (Cell untimely torn protein 14) Length = 1172 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 9 LNFHTKCIISSXXLDSDVYDPS 74 + FH + S LD DVYDPS Sbjct: 640 VTFHPSVKLKSVTLDGDVYDPS 661
>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)| Length = 815 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/55 (32%), Positives = 20/55 (36%) Frame = +2 Query: 203 CPSSGGCRRRATPSQKSCXFPGHSRSCRRAVCTLQCHHGTS*APQHAERGQAQTP 367 CP GG R TPS +C R+C A T C P R TP Sbjct: 634 CPGGGGEGRLMTPSSAAC------RTCWAACATSWCR-----TPSTTPRSWCSTP 677
>FUS1_YEAST (P11710) Nuclear fusion protein FUS1| Length = 512 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/75 (28%), Positives = 30/75 (40%) Frame = +3 Query: 102 Q*TTMVLASYNIMSVGVPTAQHSSQGNQWXXGSAVQARXXXXXXRPHPKNLVNSQVTRDP 281 Q TT VL + MS + + SSQ + S R P NL+ S V P Sbjct: 7 QTTTTVLTTVAAMSTTLASNYISSQASS--STSVTTVTTIATSIRSTPSNLLFSNVAAQP 64 Query: 282 VAELXVHCSVTMGLP 326 + +++GLP Sbjct: 65 KSSSASTIGLSIGLP 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,667,269 Number of Sequences: 219361 Number of extensions: 945725 Number of successful extensions: 2100 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2039 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2098 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
