| Clone Name | rbaal20b04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E10, full insert sequence Length = 1623 Score = 71.9 bits (36), Expect = 1e-09 Identities = 91/110 (82%) Strand = Plus / Minus Query: 262 cccaggtcactcgagatcctgtcgcagagctgtntgtacactgcagtgtcaccatgggac 321 |||| |||||| |||||||| || ||||||||| | |||| ||||| ||| || | |||| Sbjct: 1311 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1252 Query: 322 ttcctaagctccacaacatgcagagaggggccaagctcaaacacctnggc 371 |||||||| || ||||||| | ||| |||||||||||||| |||| ||| Sbjct: 1251 ttcctaagttctacaacatttacagaagggccaagctcaaaaacctcggc 1202
>dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full insert sequence Length = 1671 Score = 71.9 bits (36), Expect = 1e-09 Identities = 91/110 (82%) Strand = Plus / Minus Query: 262 cccaggtcactcgagatcctgtcgcagagctgtntgtacactgcagtgtcaccatgggac 321 |||| |||||| |||||||| || ||||||||| | |||| ||||| ||| || | |||| Sbjct: 1356 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1297 Query: 322 ttcctaagctccacaacatgcagagaggggccaagctcaaacacctnggc 371 |||||||| || ||||||| | ||| |||||||||||||| |||| ||| Sbjct: 1296 ttcctaagttctacaacatttacagaagggccaagctcaaaaacctcggc 1247
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Plus Query: 318 ggacttcctaagctccacaacatgcagagaggggccaagctcaaacacct 367 |||||||||||| || ||||||| | ||| |||||||||||||| |||| Sbjct: 146532 ggacttcctaagttctacaacatttacagaagggccaagctcaaaaacct 146581
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Plus Query: 318 ggacttcctaagctccacaacatgcagagaggggccaagctcaaacacct 367 |||||||||||| || ||||||| | ||| |||||||||||||| |||| Sbjct: 2053663 ggacttcctaagttctacaacatttacagaagggccaagctcaaaaacct 2053712
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Plus Query: 318 ggacttcctaagctccacaacatgcagagaggggccaagctcaaacacct 367 |||||||||||| || ||||||| | ||| |||||||||||||| |||| Sbjct: 20504 ggacttcctaagttctacaacatttacagaagggccaagctcaaaaacct 20553
>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence Length = 192299 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 agctccacaacatgcagagag 348 ||||||||||||||||||||| Sbjct: 137093 agctccacaacatgcagagag 137113
>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete sequence Length = 219145 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 agctccacaacatgcagagag 348 ||||||||||||||||||||| Sbjct: 103826 agctccacaacatgcagagag 103846
>ref|XM_537285.2| PREDICTED: Canis familiaris similar to Zinc finger protein 24 (Zinc finger protein 191) (Zinc finger protein KOX17) (Retinoic acid suppression protein A) (RSG-A) (Zinc finger and SCAN domain containing protein 3) (LOC480162), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 taatttcttaaactttcaca 21 |||||||||||||||||||| Sbjct: 1293 taatttcttaaactttcaca 1274
>gb|AC073248.5| Homo sapiens BAC clone CTD-2009F14 from 7, complete sequence Length = 128294 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 taatttcttaaactttcaca 21 |||||||||||||||||||| Sbjct: 44061 taatttcttaaactttcaca 44080
>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene and two novel genes, complete sequence Length = 134242 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gaaatgcataatatctagtt 42 |||||||||||||||||||| Sbjct: 87703 gaaatgcataatatctagtt 87684
>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175504 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 cctacagcacagcactcatcacaa 176 |||||| ||||||||||||||||| Sbjct: 161784 cctacaccacagcactcatcacaa 161807
>dbj|AB056779.1| Macaca fascicularis brain cDNA clone:QccE-21474, full insert sequence Length = 1926 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 taatttcttaaactttcaca 21 |||||||||||||||||||| Sbjct: 1688 taatttcttaaactttcaca 1669 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,279,583 Number of Sequences: 3902068 Number of extensions: 2279583 Number of successful extensions: 36774 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36750 Number of HSP's gapped (non-prelim): 24 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)