ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
2dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
3gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
5gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
6gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosom... 42 1.3
7emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chro... 42 1.3
8ref|XM_537285.2| PREDICTED: Canis familiaris similar to Zinc fin... 40 5.3
9gb|AC073248.5| Homo sapiens BAC clone CTD-2009F14 from 7, comple... 40 5.3
10emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chro... 40 5.3
11gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Can... 40 5.3
12dbj|AB056779.1| Macaca fascicularis brain cDNA clone:QccE-21474,... 40 5.3

>dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E10, full
            insert sequence
          Length = 1623

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                        
Query: 262  cccaggtcactcgagatcctgtcgcagagctgtntgtacactgcagtgtcaccatgggac 321
            |||| |||||| |||||||| || ||||||||| | |||| ||||| ||| || | ||||
Sbjct: 1311 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1252

                                                              
Query: 322  ttcctaagctccacaacatgcagagaggggccaagctcaaacacctnggc 371
            |||||||| || |||||||  | ||| |||||||||||||| |||| |||
Sbjct: 1251 ttcctaagttctacaacatttacagaagggccaagctcaaaaacctcggc 1202



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>dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full
            insert sequence
          Length = 1671

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                        
Query: 262  cccaggtcactcgagatcctgtcgcagagctgtntgtacactgcagtgtcaccatgggac 321
            |||| |||||| |||||||| || ||||||||| | |||| ||||| ||| || | ||||
Sbjct: 1356 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1297

                                                              
Query: 322  ttcctaagctccacaacatgcagagaggggccaagctcaaacacctnggc 371
            |||||||| || |||||||  | ||| |||||||||||||| |||| |||
Sbjct: 1296 ttcctaagttctacaacatttacagaagggccaagctcaaaaacctcggc 1247



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>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 318    ggacttcctaagctccacaacatgcagagaggggccaagctcaaacacct 367
              |||||||||||| || |||||||  | ||| |||||||||||||| ||||
Sbjct: 146532 ggacttcctaagttctacaacatttacagaagggccaagctcaaaaacct 146581



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                 
Query: 318     ggacttcctaagctccacaacatgcagagaggggccaagctcaaacacct 367
               |||||||||||| || |||||||  | ||| |||||||||||||| ||||
Sbjct: 2053663 ggacttcctaagttctacaacatttacagaagggccaagctcaaaaacct 2053712



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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 318   ggacttcctaagctccacaacatgcagagaggggccaagctcaaacacct 367
             |||||||||||| || |||||||  | ||| |||||||||||||| ||||
Sbjct: 20504 ggacttcctaagttctacaacatttacagaagggccaagctcaaaaacct 20553



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>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence
          Length = 192299

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 328    agctccacaacatgcagagag 348
              |||||||||||||||||||||
Sbjct: 137093 agctccacaacatgcagagag 137113



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>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete
              sequence
          Length = 219145

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 328    agctccacaacatgcagagag 348
              |||||||||||||||||||||
Sbjct: 103826 agctccacaacatgcagagag 103846



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>ref|XM_537285.2| PREDICTED: Canis familiaris similar to Zinc finger protein 24 (Zinc
            finger protein 191) (Zinc finger protein KOX17) (Retinoic
            acid suppression protein A) (RSG-A) (Zinc finger and SCAN
            domain containing protein 3) (LOC480162), mRNA
          Length = 1569

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    taatttcttaaactttcaca 21
            ||||||||||||||||||||
Sbjct: 1293 taatttcttaaactttcaca 1274



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>gb|AC073248.5| Homo sapiens BAC clone CTD-2009F14 from 7, complete sequence
          Length = 128294

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     taatttcttaaactttcaca 21
             ||||||||||||||||||||
Sbjct: 44061 taatttcttaaactttcaca 44080



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>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a
             novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene
             and two novel genes, complete sequence
          Length = 134242

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    gaaatgcataatatctagtt 42
             ||||||||||||||||||||
Sbjct: 87703 gaaatgcataatatctagtt 87684



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>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175504

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 153    cctacagcacagcactcatcacaa 176
              |||||| |||||||||||||||||
Sbjct: 161784 cctacaccacagcactcatcacaa 161807



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>dbj|AB056779.1| Macaca fascicularis brain cDNA clone:QccE-21474, full insert sequence
          Length = 1926

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    taatttcttaaactttcaca 21
            ||||||||||||||||||||
Sbjct: 1688 taatttcttaaactttcaca 1669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,279,583
Number of Sequences: 3902068
Number of extensions: 2279583
Number of successful extensions: 36774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36750
Number of HSP's gapped (non-prelim): 24
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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