ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194569.1| Oryza sativa (japonica cultivar-group) putative... 56 9e-05
2gb|AC079685.2| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
3gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
5dbj|AK071280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
6dbj|AK070621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
8ref|XM_462682.1| Oryza sativa (japonica cultivar-group), predic... 46 0.084
9ref|XM_473737.1| Oryza sativa (japonica cultivar-group), predic... 46 0.084
10gb|AC150392.2| Branchiostoma floridae clone CH302-12P3, complete... 46 0.084
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
12dbj|AK101480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
13emb|BX000489.8| Zebrafish DNA sequence from clone CH211-215E19, ... 46 0.084
14emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 46 0.084
15gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequ... 44 0.33
16gb|AC096950.2| Homo sapiens chromosome 1 clone RP4-612J11, compl... 44 0.33
17gb|AC010376.5|AC010376 Homo sapiens chromosome 5 clone CTD-2060F... 44 0.33
18gb|AC110921.9| Homo sapiens chromosome 17, clone CTD-2653B5, com... 44 0.33
19gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, co... 44 0.33
20ref|NM_194568.1| Oryza sativa (japonica cultivar-group) putative... 42 1.3
21gb|AY023043.1| Oryza sativa microsatellite MRG5368 containing (G... 42 1.3
22gb|AC006651.2| Caenorhabditis elegans fosmid H06I04, complete se... 42 1.3
23emb|BX572648.16| Zebrafish DNA sequence from clone DKEY-40G16 in... 42 1.3
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
25dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
26gb|AC113325.7| Mus musculus chromosome 1, clone RP23-453H23, com... 40 5.2
27gb|AY320035.2| Bacteriophage VWB, complete genome 40 5.2
28gb|AC123067.4| Mus musculus BAC clone RP23-20M6 from chromosome ... 40 5.2
29gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosom... 40 5.2
30gb|AY311484.1| Litchi chinensis ethylene receptor (ERS) mRNA, co... 40 5.2
31gb|AY239227.1| Eimeria maxima TFP250 mRNA, complete cds 40 5.2
32gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosom... 40 5.2
33emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in ... 40 5.2
34emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in ... 40 5.2
35emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d... 40 5.2
36dbj|AP004956.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.2 
>ref|NM_194569.1| Oryza sativa (japonica cultivar-group) putative LeOPT1 - oligopeptide
            transporter (OSJNBb0012A20.6), mRNA
          Length = 1701

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 309  aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
            ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 1607 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 1564
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>gb|AC079685.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0012A20, complete sequence
          Length = 131599

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 309   aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
             ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 31853 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 31896



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 309   aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatccac 353
             ||||||||||| | |||||| || |||||||  ||||||||||||
Sbjct: 21964 aagaagtagtcaaggtgcccctcatcgaggttgtccgggatccac 22008
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 309    aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
              ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 750996 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 751039



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 309    aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatccac 353
              ||||||||||| | |||||| || |||||||  ||||||||||||
Sbjct: 741107 aagaagtagtcaaggtgcccctcatcgaggttgtccgggatccac 741151
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 309    aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
              ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 750996 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 751039



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 309    aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatccac 353
              ||||||||||| | |||||| || |||||||  ||||||||||||
Sbjct: 741107 aagaagtagtcaaggtgcccctcatcgaggttgtccgggatccac 741151
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>dbj|AK071280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086C03, full
           insert sequence
          Length = 1103

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 309 aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
           ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 846 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 803
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>dbj|AK070621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063N08, full
            insert sequence
          Length = 2198

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 309  aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
            ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 1909 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 1866
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 309    aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatcca 352
              ||||||||||||| |||||| ||||||||||  |||||||||||
Sbjct: 750993 aagaagtagtccaggtgcccctcgtcgaggttgtccgggatcca 751036



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 309    aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatccac 353
              ||||||||||| | |||||| || |||||||  ||||||||||||
Sbjct: 741104 aagaagtagtcaaggtgcccctcatcgaggttgtccgggatccac 741148
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>ref|XM_462682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1782

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 293  cgccgccataacccaaaagaagtagtccaagtgcccgtcgtcgaggt 339
            ||||||||| ||||| ||||||||||||| ||| || |||| |||||
Sbjct: 1710 cgccgccatgacccagaagaagtagtccatgtgtccttcgttgaggt 1664
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>ref|XM_473737.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1782

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 293  cgccgccataacccaaaagaagtagtccaagtgcccgtcgtcgaggt 339
            ||||||||| ||||| ||||||||||||| ||| || |||| |||||
Sbjct: 1710 cgccgccatgacccagaagaagtagtccatgtgtccttcgttgaggt 1664
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>gb|AC150392.2| Branchiostoma floridae clone CH302-12P3, complete sequence
          Length = 180902

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 77   gttgaagaagaagacaagtaatactgtacat 107
            |||||||||||||||||| |||| |||||||
Sbjct: 7225 gttgaagaagaagacaaggaataatgtacat 7195
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 293      cgccgccataacccaaaagaagtagtccaagtgcccgtcgtcgaggt 339
                ||||||||| ||||| ||||||||||||| ||| || |||| |||||
Sbjct: 30199220 cgccgccatgacccagaagaagtagtccatgtgtccttcgttgaggt 30199174
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>dbj|AK101480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041C01, full
            insert sequence
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 293  cgccgccataacccaaaagaagtagtccaagtgcccgtcgtcgaggt 339
            ||||||||| ||||| ||||||||||||| ||| || |||| |||||
Sbjct: 1940 cgccgccatgacccagaagaagtagtccatgtgtccttcgttgaggt 1894
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>emb|BX000489.8| Zebrafish DNA sequence from clone CH211-215E19, complete sequence
          Length = 201748

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 104    acatgtttaaacctattctatct 126
              |||||||||||||||||||||||
Sbjct: 114741 acatgtttaaacctattctatct 114763
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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
             complete sequence
          Length = 186142

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 293   cgccgccataacccaaaagaagtagtccaagtgcccgtcgtcgaggt 339
             ||||||||| ||||| ||||||||||||| ||| || |||| |||||
Sbjct: 95511 cgccgccatgacccagaagaagtagtccatgtgtccttcgttgaggt 95465
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>gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequence
          Length = 94647

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 69    ggcagagagttgaagaagaaga 90
             ||||||||||||||||||||||
Sbjct: 20532 ggcagagagttgaagaagaaga 20553
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>gb|AC096950.2| Homo sapiens chromosome 1 clone RP4-612J11, complete sequence
          Length = 117864

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 7     gtatttgtgtggttcatttgac 28
             ||||||||||||||||||||||
Sbjct: 60674 gtatttgtgtggttcatttgac 60653
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>gb|AC010376.5|AC010376 Homo sapiens chromosome 5 clone CTD-2060F24, complete sequence
          Length = 144887

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 130   tcttcttatctctatcttcaaa 151
             ||||||||||||||||||||||
Sbjct: 69408 tcttcttatctctatcttcaaa 69429
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>gb|AC110921.9| Homo sapiens chromosome 17, clone CTD-2653B5, complete sequence
          Length = 240058

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 58    tacatgataagggcagagagttgaag 83
             |||||||||||||||||||| |||||
Sbjct: 13767 tacatgataagggcagagaggtgaag 13742
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>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence
          Length = 195558

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 58    tacatgataagggcagagagttgaag 83
             |||||||||||||||||||| |||||
Sbjct: 22414 tacatgataagggcagagaggtgaag 22439
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>ref|NM_194568.1| Oryza sativa (japonica cultivar-group) putative LeOPT1 - oligopeptide
            transporter (OSJNBb0012A20.5), mRNA
          Length = 1776

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 309  aagaagtagtccaagtgcccgtcgtcgaggtcctccgggatccac 353
            ||||||||||| | |||||| || |||||||  ||||||||||||
Sbjct: 1655 aagaagtagtcaaggtgcccctcatcgaggttgtccgggatccac 1611
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>gb|AY023043.1| Oryza sativa microsatellite MRG5368 containing (GAA)X14, genomic
           sequence
          Length = 242

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 70  gcagagagttgaagaagaaga 90
           |||||||||||||||||||||
Sbjct: 91  gcagagagttgaagaagaaga 111
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>gb|AC006651.2| Caenorhabditis elegans fosmid H06I04, complete sequence
          Length = 47880

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    gcagagagttgaagaagaaga 90
             |||||||||||||||||||||
Sbjct: 13523 gcagagagttgaagaagaaga 13543
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>emb|BX572648.16| Zebrafish DNA sequence from clone DKEY-40G16 in linkage group 15,
              complete sequence
          Length = 180747

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     aatactgtacatgtttaaacc 116
              |||||||||||||||||||||
Sbjct: 134167 aatactgtacatgtttaaacc 134147
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 70       gcagagagttgaagaagaaga 90
                |||||||||||||||||||||
Sbjct: 21899025 gcagagagttgaagaagaaga 21899045
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>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1114B07
          Length = 148060

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     gcagagagttgaagaagaaga 90
              |||||||||||||||||||||
Sbjct: 128318 gcagagagttgaagaagaaga 128338
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>gb|AC113325.7| Mus musculus chromosome 1, clone RP23-453H23, complete sequence
          Length = 191225

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   aagaagtagtccaagtgccc 328
             ||||||||||||||||||||
Sbjct: 40493 aagaagtagtccaagtgccc 40512
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>gb|AY320035.2| Bacteriophage VWB, complete genome
          Length = 49220

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   caagtgcccgtcgtcgaggt 339
             ||||||||||||||||||||
Sbjct: 25011 caagtgcccgtcgtcgaggt 25030
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>gb|AC123067.4| Mus musculus BAC clone RP23-20M6 from chromosome 12, complete sequence
          Length = 200251

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 119    ttctatctccatcttcttatctctatct 146
              |||||||||||||||  |||||||||||
Sbjct: 197739 ttctatctccatctttctatctctatct 197712
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>gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosome 12, complete
             sequence
          Length = 171251

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 119   ttctatctccatcttcttatctctatct 146
             |||||||||||||||  |||||||||||
Sbjct: 23557 ttctatctccatctttctatctctatct 23530
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>gb|AY311484.1| Litchi chinensis ethylene receptor (ERS) mRNA, complete cds
          Length = 2193

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  agagagttgaagaagaagac 91
           ||||||||||||||||||||
Sbjct: 408 agagagttgaagaagaagac 389
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>gb|AY239227.1| Eimeria maxima TFP250 mRNA, complete cds
          Length = 7990

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  agttgcatttccgctgtacc 249
            ||||||||||||||||||||
Sbjct: 1295 agttgcatttccgctgtacc 1276
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>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence
          Length = 204620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   tctccatcttcttatctctatctt 147
             ||||||||||||||| ||||||||
Sbjct: 89855 tctccatcttcttatatctatctt 89878
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>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13,
            complete sequence
          Length = 166823

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   aagggcagagagttgaagaa 85
            ||||||||||||||||||||
Sbjct: 7313 aagggcagagagttgaagaa 7332
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>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14,
              complete sequence
          Length = 181055

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    ttcttatctctatcttcaaa 151
              ||||||||||||||||||||
Sbjct: 138014 ttcttatctctatcttcaaa 137995
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>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE
          Length = 131814

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    atggagtatataggagtact 55
             ||||||||||||||||||||
Sbjct: 92887 atggagtatataggagtact 92868
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>dbj|AP004956.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34I04, TM0133,
             complete sequence
          Length = 106411

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   tacatgtttaaacctattct 122
             ||||||||||||||||||||
Sbjct: 52504 tacatgtttaaacctattct 52523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,955,158
Number of Sequences: 3902068
Number of extensions: 3955158
Number of successful extensions: 67892
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67745
Number of HSP's gapped (non-prelim): 147
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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