| Clone Name | rbaal19p05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK060876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A04, full insert sequence Length = 1014 Score = 210 bits (106), Expect = 3e-51 Identities = 205/238 (86%) Strand = Plus / Minus Query: 219 ttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctct 278 ||||||| |||||||| |||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 756 ttcacttcaggttcttattaaaccagtcaatcatgtccgccagggcttcctcggcgctct 697 Query: 279 ttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggga 338 | |||||||| ||||| || || |||||||| ||||||||||| ||||||||||| Sbjct: 696 tgacagcagctgcatcatcattcttgtatctcacagtccatccatgttcaaccccaggga 637 Query: 339 agatcttgacaaagtgagcaatccctgagttagatgatagaacctgctcgaactccttga 398 |||||||||||||||| |||||||||| || || || |||||||||||||||| ||| | Sbjct: 636 agatcttgacaaagtggccaatccctgactttgaagaaagaacctgctcgaactgcttca 577 Query: 399 ccaattctggtggggacatcacatcagtttcagctccaagtacagcgatggggcattt 456 ||| ||||||||||||||| |||| ||||||||||||||| ||| || |||||||| Sbjct: 576 ccacttctggtggggacatacgatcaatttcagctccaagtatagcaattgggcattt 519
>dbj|AK101551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O15, full insert sequence Length = 1127 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Minus Query: 221 cacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctcttt 280 ||||| |||||||| |||||||||||||||||||| | |||||| |||||||||||||| Sbjct: 938 cacttcaggttcttattaaaccagtcaatcatgtccgccagggcttcctcggcgctcttg 879 Query: 281 acagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccagggaag 340 |||||||| ||||| || || |||||||| ||||||||||| ||||||||||||| Sbjct: 878 acagcagctgcatcatcattcttgtatctcacagtccatccatgttcaaccccagggaag 819 Query: 341 atcttgacaaagtgagcaatccctgagttagatgatagaacctgctcgaactccttgacc 400 |||||||||||||| |||||||||| || || || |||||||||||||||| ||| || Sbjct: 818 atcttgacaaagtggccaatccctgactttgaagaaagaacctgctcgaactgcttctcc 759 Query: 401 aattctggtggggacatcacatcagtttcagctccaagtacagcgatggggcattt 456 | ||||||||||||||| |||| ||||||||||||||| ||| || |||||||| Sbjct: 758 acttctggtggggacatacgatcaatttcagctccaagtatagcaattgggcattt 703
>dbj|AK073623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N15, full insert sequence Length = 1127 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Minus Query: 221 cacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctcttt 280 ||||| |||||||| |||||||||||||||||||| | |||||| |||||||||||||| Sbjct: 938 cacttcaggttcttattaaaccagtcaatcatgtccgccagggcttcctcggcgctcttg 879 Query: 281 acagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccagggaag 340 |||||||| ||||| || || |||||||| ||||||||||| ||||||||||||| Sbjct: 878 acagcagctgcatcatcattcttgtatctcacagtccatccatgttcaaccccagggaag 819 Query: 341 atcttgacaaagtgagcaatccctgagttagatgatagaacctgctcgaactccttgacc 400 |||||||||||||| |||||||||| || || || |||||||||||||||| ||| || Sbjct: 818 atcttgacaaagtggccaatccctgactttgaagaaagaacctgctcgaactgcttctcc 759 Query: 401 aattctggtggggacatcacatcagtttcagctccaagtacagcgatggggcattt 456 | ||||||||||||||| |||| ||||||||||||||| ||| || |||||||| Sbjct: 758 acttctggtggggacatacgatcaatttcagctccaagtatagcaattgggcattt 703
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 219 ttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctct 278 |||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||| Sbjct: 66628 ttcacttgaggttcttattaaaccagtcgatcatgtctgccagggcttcctcggcgctct 66569 Query: 279 ttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggga 338 | |||||||| ||||| || | || ||||| |||||||||||||| |||||||||| Sbjct: 66568 tgacagcagcggcatcgtcatccttgtatcttacggtccatccatgctcgaccccaggga 66509 Query: 339 agatcttgacaaagtgagcaatc 361 ||||||||||||||||| ||||| Sbjct: 66508 agatcttgacaaagtgaccaatc 66486 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 219 ttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctct 278 ||||||| |||||||| |||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 73161 ttcacttcaggttcttattaaaccagtcaatcatgtccgccagggcttcctcggcgctct 73102 Query: 279 ttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggga 338 | |||||||| ||||| || || |||||||| ||||||||||| ||||||||||| Sbjct: 73101 tgacagcagctgcatcatcattcttgtatctcacagtccatccatgttcaaccccaggga 73042 Query: 339 agatcttgacaaagtg 354 |||||||||||||||| Sbjct: 73041 agatcttgacaaagtg 73026 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 377 agaacctgctcgaactccttgaccaattctggtggggacatcacatcagtttcagctcca 436 |||||||||||||||| ||| |||| ||||||||||||||| |||| ||||||||||| Sbjct: 72353 agaacctgctcgaactgcttcaccacttctggtggggacatacgatcaatttcagctcca 72294 Query: 437 agtacagcgatggggcattt 456 |||| ||| || |||||||| Sbjct: 72293 agtatagcaattgggcattt 72274 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 239 aaccagtcaatcatgtctgtcagggcctcctcggcgctctttacagcagccgcatcttcg 298 ||||| || ||||||||| |||||| ||||| |||||||| || ||||| ||||| ||| Sbjct: 82772 aaccaatccatcatgtcttccagggcttcctcagcgctcttgacggcagctgcatcatcg 82713 Query: 299 ccattatatctcacggtccatccatgagaaaccccagggaagatcttgacaaagtgagca 358 ||| |||||||| | ||||||||| || || ||||| |||||||| ||||||||| Sbjct: 82712 tgattgtatctcacagcccatccatgctctacgccggggaaaatcttgacgaagtgagca 82653 Query: 359 atc 361 ||| Sbjct: 82652 atc 82650
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 219 ttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctct 278 |||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||| Sbjct: 19262553 ttcacttgaggttcttattaaaccagtcgatcatgtctgccagggcttcctcggcgctct 19262494 Query: 279 ttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggga 338 | |||||||| ||||| || | || ||||| |||||||||||||| |||||||||| Sbjct: 19262493 tgacagcagcggcatcgtcatccttgtatcttacggtccatccatgctcgaccccaggga 19262434 Query: 339 agatcttgacaaagtgagcaatc 361 ||||||||||||||||| ||||| Sbjct: 19262433 agatcttgacaaagtgaccaatc 19262411 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 219 ttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctct 278 ||||||| |||||||| |||||||||||||||||||| | |||||| ||||||||||||| Sbjct: 19269086 ttcacttcaggttcttattaaaccagtcaatcatgtccgccagggcttcctcggcgctct 19269027 Query: 279 ttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggga 338 | |||||||| ||||| || || |||||||| ||||||||||| ||||||||||| Sbjct: 19269026 tgacagcagctgcatcatcattcttgtatctcacagtccatccatgttcaaccccaggga 19268967 Query: 339 agatcttgacaaagtg 354 |||||||||||||||| Sbjct: 19268966 agatcttgacaaagtg 19268951 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 377 agaacctgctcgaactccttgaccaattctggtggggacatcacatcagtttcagctcca 436 |||||||||||||||| ||| |||| ||||||||||||||| |||| ||||||||||| Sbjct: 19268278 agaacctgctcgaactgcttcaccacttctggtggggacatacgatcaatttcagctcca 19268219 Query: 437 agtacagcgatggggcattt 456 |||| ||| || |||||||| Sbjct: 19268218 agtatagcaattgggcattt 19268199 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 239 aaccagtcaatcatgtctgtcagggcctcctcggcgctctttacagcagccgcatcttcg 298 ||||| || ||||||||| |||||| ||||| |||||||| || ||||| ||||| ||| Sbjct: 19278697 aaccaatccatcatgtcttccagggcttcctcagcgctcttgacggcagctgcatcatcg 19278638 Query: 299 ccattatatctcacggtccatccatgagaaaccccagggaagatcttgacaaagtgagca 358 ||| |||||||| | ||||||||| || || ||||| |||||||| ||||||||| Sbjct: 19278637 tgattgtatctcacagcccatccatgctctacgccggggaaaatcttgacgaagtgagca 19278578 Query: 359 atc 361 ||| Sbjct: 19278577 atc 19278575
>gb|BT016986.1| Zea mays clone EK07D2304D04.c mRNA sequence Length = 1139 Score = 77.8 bits (39), Expect = 3e-11 Identities = 177/223 (79%) Strand = Plus / Minus Query: 218 gttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctc 277 ||||| || ||||||||||| |||||||| | |||||| | | ||| ||||| |||||| Sbjct: 914 gttcattttaggttcttgttgaaccagtcgagcatgtccgcaaaggcttcctcagcgctc 855 Query: 278 tttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggg 337 || || ||||| ||||| ||| | ||||||||| |||| ||||| | || |||||| Sbjct: 854 ttcacggcagctgcatcatcgaggctgtatctcacgctccacccatgcgccacgccaggg 795 Query: 338 aagatcttgacaaagtgagcaatccctgagttagatgatagaacctgctcgaactccttg 397 |||| |||||| |||||| ||| ||||||||| || || | |||||||| | |||| Sbjct: 794 aagaccttgacgaagtgaccaacccctgagttcacagaaagggcttgctcgaattgcttg 735 Query: 398 accaattctggtggggacatcacatcagtttcagctccaagta 440 || || |||||||||||| ||||||| | ||||||||||||| Sbjct: 734 actaactctggtggggacctcacatccatctcagctccaagta 692
>gb|AY104092.1| Zea mays PCO081688 mRNA sequence Length = 1359 Score = 77.8 bits (39), Expect = 3e-11 Identities = 177/223 (79%) Strand = Plus / Minus Query: 218 gttcacttgaggttcttgttaaaccagtcaatcatgtctgtcagggcctcctcggcgctc 277 ||||| || ||||||||||| |||||||| | |||||| | | ||| ||||| |||||| Sbjct: 1045 gttcattttaggttcttgttgaaccagtcgagcatgtccgcaaaggcttcctcagcgctc 986 Query: 278 tttacagcagccgcatcttcgccattatatctcacggtccatccatgagaaaccccaggg 337 || || ||||| ||||| ||| | ||||||||| |||| ||||| | || |||||| Sbjct: 985 ttcacggcagctgcatcatcgaggctgtatctcacgctccacccatgcgccacgccaggg 926 Query: 338 aagatcttgacaaagtgagcaatccctgagttagatgatagaacctgctcgaactccttg 397 |||| |||||| |||||| ||| ||||||||| || || | |||||||| | |||| Sbjct: 925 aagaccttgacgaagtgaccaacccctgagttcacagaaagggcttgctcgaattgcttg 866 Query: 398 accaattctggtggggacatcacatcagtttcagctccaagta 440 || || |||||||||||| ||||||| | ||||||||||||| Sbjct: 865 actaactctggtggggacctcacatccatctcagctccaagta 823
>dbj|AK101507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044O16, full insert sequence Length = 1039 Score = 61.9 bits (31), Expect = 2e-06 Identities = 100/123 (81%) Strand = Plus / Minus Query: 239 aaccagtcaatcatgtctgtcagggcctcctcggcgctctttacagcagccgcatcttcg 298 ||||| || ||||||||| |||||| ||||| |||||||| || ||||| ||||| ||| Sbjct: 747 aaccaatccatcatgtcttccagggcttcctcagcgctcttgacggcagctgcatcatcg 688 Query: 299 ccattatatctcacggtccatccatgagaaaccccagggaagatcttgacaaagtgagca 358 ||| |||||||| | ||||||||| || || ||||| |||||||| ||||||||| Sbjct: 687 tgattgtatctcacagcccatccatgctctacgccggggaaaatcttgacgaagtgagca 628 Query: 359 atc 361 ||| Sbjct: 627 atc 625
>emb|Y10983.1|GMP450CP9 Glycine max mRNA for cytochrome P450-like protein, clone CP9 Length = 1818 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 221 cacttgaggttcttgttaaacca 243 ||||||||||||||||||||||| Sbjct: 1551 cacttgaggttcttgttaaacca 1573
>gb|AC139344.17| Medicago truncatula clone mth2-34b22, complete sequence Length = 129728 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 233 ttgttaaaccagtcaatcatgt 254 |||||||||||||||||||||| Sbjct: 89158 ttgttaaaccagtcaatcatgt 89179
>emb|CR381630.12| Zebrafish DNA sequence from clone CH211-234G24 in linkage group 18, complete sequence Length = 152854 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 caatcacacaccaaccagcac 76 ||||||||||||||||||||| Sbjct: 88634 caatcacacaccaaccagcac 88654
>ref|XM_956627.1| Neurospora crassa OR74A hypothetical protein (NCU01108.1) partial mRNA Length = 384 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 267 cctcggcgctctttacagcagccgcatc 294 |||||||||||| |||||||||||||| Sbjct: 277 cctcggcgctctcaacagcagccgcatc 250
>ref|XM_326600.1| Neurospora crassa OR74A hypothetical protein (NCU01108.1) partial mRNA Length = 384 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 267 cctcggcgctctttacagcagccgcatc 294 |||||||||||| |||||||||||||| Sbjct: 277 cctcggcgctctcaacagcagccgcatc 250
>gb|AC113125.8| Mus musculus chromosome 14, clone RP23-350B18, complete sequence Length = 220629 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aaaccagtcaatcatgtctg 257 |||||||||||||||||||| Sbjct: 37371 aaaccagtcaatcatgtctg 37390
>gb|AC122279.3| Mus musculus BAC clone RP23-237J8 from chromosome 14, complete sequence Length = 203640 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aaaccagtcaatcatgtctg 257 |||||||||||||||||||| Sbjct: 113503 aaaccagtcaatcatgtctg 113484
>gb|AC164166.2| Mus musculus BAC clone RP23-88C18 from chromosome 16, complete sequence Length = 140552 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 ctcctcggcgctctttacagcagc 288 ||||||||||||||||||| |||| Sbjct: 138617 ctcctcggcgctctttacaacagc 138594
>emb|AL670008.1|NCB13O8 Neurospora crassa DNA linkage group V BAC contig B13O8 Length = 80765 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 267 cctcggcgctctttacagcagccgcatc 294 |||||||||||| |||||||||||||| Sbjct: 13956 cctcggcgctctcaacagcagccgcatc 13929
>gb|AE014180.1| Mus musculus piebald deletion region section 8 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aaaccagtcaatcatgtctg 257 |||||||||||||||||||| Sbjct: 29399 aaaccagtcaatcatgtctg 29418
>gb|AC122472.5| Mus musculus BAC clone RP24-323G20 from chromosome 10, complete sequence Length = 180612 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ttattagttattacaaaagg 201 |||||||||||||||||||| Sbjct: 10445 ttattagttattacaaaagg 10464
>gb|AC096664.1| Homo sapiens BAC clone RP11-240J3 from 2, complete sequence Length = 83996 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ttcacttgaggttcttgtta 238 |||||||||||||||||||| Sbjct: 76162 ttcacttgaggttcttgtta 76143
>gb|AC156272.6| Mus musculus 10 BAC RP24-244K5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166962 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aaccccagggaagatcttga 347 |||||||||||||||||||| Sbjct: 24647 aaccccagggaagatcttga 24628
>emb|AL928547.12| Mouse DNA sequence from clone RP23-226B16 on chromosome 2, complete sequence Length = 131255 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gaatgacacaggcttattag 188 |||||||||||||||||||| Sbjct: 10016 gaatgacacaggcttattag 10035
>emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chromosome 16, complete sequence Length = 181320 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 ctcctcggcgctctttacagcagc 288 ||||||||||||||||||| |||| Sbjct: 29744 ctcctcggcgctctttacaacagc 29721
>gb|AC004386.1|AC004386 Homo Sapiens Chromosome X clone bWXD691, complete sequence Length = 172657 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaacaccataacataaaccc 142 |||||||||||||||||||| Sbjct: 110387 aaacaccataacataaaccc 110406
>gb|AC002418.1|AC002418 Human Chromosome X, complete sequence Length = 128915 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaacaccataacataaaccc 142 |||||||||||||||||||| Sbjct: 60316 aaacaccataacataaaccc 60297
>gb|AC117208.3| Mus musculus BAC clone RP23-279D15 from 10, complete sequence Length = 174202 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ttattagttattacaaaagg 201 |||||||||||||||||||| Sbjct: 137220 ttattagttattacaaaagg 137239
>gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, complete sequence Length = 172271 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 aaaccagtcaatcatgtctg 257 |||||||||||||||||||| Sbjct: 150717 aaaccagtcaatcatgtctg 150736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,731,465 Number of Sequences: 3902068 Number of extensions: 3731465 Number of successful extensions: 53980 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53910 Number of HSP's gapped (non-prelim): 64 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)