Clone Information

BLAST Search Result

Clone Name	rbaal19n17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ234562.1\|HVU234562 Hordeum vulgare genomic DNA fragment; c...	846	0.0
2	emb\|AJ234450.1\|HVU234450 Hordeum vulgare partial mRNA; clone cMW...	823	0.0
3	gb\|BT018115.1\| Zea mays clone EL01N0553H03.c mRNA sequence	84	5e-13
4	gb\|AY107736.1\| Zea mays PCO090313 mRNA sequence	84	5e-13
5	ref\|XM_450593.1\| Oryza sativa (japonica cultivar-group), mRNA	80	7e-12
6	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	80	7e-12
7	dbj\|AP005508.3\| Oryza sativa (japonica cultivar-group) genomic D...	80	7e-12
8	dbj\|AK071395.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	80	7e-12
9	ref\|XM_546550.2\| PREDICTED: Canis familiaris similar to Matrilys...	44	0.40
10	gb\|AC012470.16\| Homo sapiens chromosome 10 clone RP11-506P9, com...	44	0.40
11	emb\|AL732567.8\| Zebrafish DNA sequence from clone CH211-263A23 i...	44	0.40
12	ref\|XM_507654.1\| PREDICTED: Pan troglodytes similar to enoyl Coe...	42	1.6
13	gb\|BC001091.1\| Homo sapiens enoyl Coenzyme A hydratase domain co...	42	1.6
14	ref\|NM_024693.2\| Homo sapiens enoyl Coenzyme A hydratase domain ...	42	1.6
15	emb\|AL138898.19\| Human DNA sequence from clone RP11-401F24 on ch...	42	1.6
16	gb\|AC135995.7\| Homo sapiens chromosome 15, clone RP13-608F4, com...	42	1.6
17	gb\|BC009617.1\| Homo sapiens enoyl Coenzyme A hydratase domain co...	42	1.6
18	gb\|AC126605.4\| Homo sapiens chromosome 15, clone RP11-606M5, com...	42	1.6
19	emb\|CR624346.1\| full-length cDNA clone CS0DC010YB03 of Neuroblas...	42	1.6
20	emb\|CR621986.1\| full-length cDNA clone CS0DI005YJ06 of Placenta ...	42	1.6
21	emb\|CR614444.1\| full-length cDNA clone CS0DK012YK14 of HeLa cell...	42	1.6
22	emb\|CR612555.1\| full-length cDNA clone CS0DA002YJ22 of Neuroblas...	42	1.6
23	gb\|AC110291.6\| Homo sapiens chromosome 15, clone RP11-379H8, com...	42	1.6
24	emb\|CR601232.1\| full-length cDNA clone CS0DD007YE07 of Neuroblas...	42	1.6
25	emb\|CR599557.1\| full-length cDNA clone CS0DI068YK20 of Placenta ...	42	1.6
26	gb\|AF275677.1\|AF275677 Homo sapiens PP1494 protein mRNA, complet...	42	1.6
27	gb\|AF289604.1\|AF289604 Homo sapiens clone pp8332 unknown mRNA	42	1.6
28	gb\|AC010724.6\|AC010724 Homo sapiens BAC clone RP11-152F13 from 1...	42	1.6
29	dbj\|AK222511.1\| Homo sapiens mRNA for enoyl Coenzyme A hydratase...	42	1.6
30	dbj\|AK024562.1\| Homo sapiens cDNA: FLJ20909 fis, clone ADSE00425	42	1.6
31	emb\|CR450834.5\| Zebrafish DNA sequence from clone CH211-237B9 in...	42	1.6
32	gb\|M18000.1\|HUMRPS17A Human ribosomal protein S17 gene, complete...	42	1.6
33	gb\|AC122789.8\| Mus musculus chromosome 5, clone RP24-258A20, com...	40	6.3
34	gb\|AC168091.3\| Mus musculus BAC clone RP23-163F18 from chromosom...	40	6.3
35	gb\|AC137942.6\| Mus musculus chromosome 10, clone RP24-502K6, com...	40	6.3
36	gb\|AC147049.2\| Pan troglodytes BAC clone RP43-131M1 from 3, comp...	40	6.3
37	gb\|AC145856.2\| Pan troglodytes BAC clone RP43-5P12 from 7, compl...	40	6.3
38	emb\|AL356127.8\| Human DNA sequence from clone RP11-368P1 on chro...	40	6.3
39	emb\|AL159151.56\| Human DNA sequence from clone RP11-156O2 on chr...	40	6.3
40	emb\|AL034451.26\|HS191E19 Human DNA sequence from clone RP1-191E1...	40	6.3
41	emb\|X58831.1\|CSGDHANC C.sorokiniana gdhANC gene for NADP-specifi...	40	6.3
42	emb\|BX571721.8\| Zebrafish DNA sequence from clone DKEY-250L23 in...	40	6.3
43	gb\|AC164315.2\| Mus musculus BAC clone RP23-18J12 from chromosome...	40	6.3
44	gb\|AC148763.14\| Medicago truncatula clone mth2-29o24, complete s...	40	6.3
45	gb\|AC022039.7\| Homo sapiens chromosome 8, clone RP11-3G21, compl...	40	6.3
46	gb\|AC022150.6\| Homo sapiens chromosome 19 clone CTD-3099C6, comp...	40	6.3
47	gb\|AC009898.6\| Homo sapiens chromosome 8, clone RP11-138H14, com...	40	6.3
48	gb\|AF306554.1\|AF306554 Orseolia oryzae mitotype 2 12S ribosomal ...	40	6.3
49	gb\|AC092405.2\| Papio anubis clone RP41-170F23, complete sequence	40	6.3
50	dbj\|BA000001.2\| Pyrococcus horikoshii OT3 DNA, complete genome	40	6.3
51	emb\|BX321870.12\| Zebrafish DNA sequence from clone RP71-42A14 in...	40	6.3
52	emb\|BX005018.8\| Zebrafish DNA sequence from clone DKEY-209K18, c...	40	6.3
53	dbj\|AP001303.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	6.3
54	emb\|BX255891.5\| Zebrafish DNA sequence from clone DKEY-263P20 in...	40	6.3
55	gb\|AC006571.12\|AC006571 Homo sapiens, clone hRPK.23_A_1, complet...	40	6.3
56	emb\|BX294008.8\| Mouse DNA sequence from clone RP23-28K9 on chrom...	40	6.3
57	gb\|AC153964.3\| Mus musculus 10 BAC RP24-399H20 (Roswell Park Can...	40	6.3

>emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; clone MWG0803
          Length = 598

 Score =  846 bits (427), Expect = 0.0
 Identities = 461/469 (98%), Gaps = 4/469 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactgttgataggtttttctttnctcggctatttgcc-ccaaacacttgacaacagnac 59
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 586 atactgttgataggtttttcttt-ctcggctatttgccaccaaacacttgacaacag-ac 529

                                                                       
Query: 60  cgacagtaatatgcacagataaataaagttttacaattttacccagaagaaaacacaggc 119
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 528 cgacagkaatatgcacagataaawaaagttttacaattttacccagaagaaaacacaggc 469

                                                                       
Query: 120 ccacaaaggttacacagtatcttgacaaagcaacagactaagcaggagaggagtgacaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ccacaaaggttacacagtatcttgacaaagcaacagactaagcaggagaggagtgacaaa 409

                                                                       
Query: 180 cataagacattgcttatagcatataacaggctatggagggtgggggttaaattgaatagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cataagacattgcttatagcatataacaggctatggagggtgggggttaaattgaatagt 349

                                                                       
Query: 240 cctacngngatcggtgacgacagccatctcgcggccagttctttctttcactggatatgc 299
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cctact-tgatcggtgacgacagccatctcgcggccagttctttctttcactggatatgc 290

                                                                       
Query: 300 tgttcttccagtttgtcccttcactggatgtgcatgctgttcttccatctctgtgtagca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgttcttccagtttgtcccttcactggatgtgcatgctgttcttccatctctgtgtagca 230

                                                                       
Query: 360 gcactgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gcactgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgt 170

                                                            
Query: 420 ttgaagccgtgggattcggctcgcgggccaagccgttcgcaaagtagcc 468
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttgaagccgtgggattcggctcgcgggccaagccgttcgcaaagtagcc 121

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>emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMWG0770
          Length = 594

 Score =  823 bits (415), Expect = 0.0
 Identities = 462/471 (98%), Gaps = 6/471 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactgttgataggtttttctttnctcggctatttgcc-ccaaacacttgacaacagnac 59
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct: 582 atactgttgataggtttttcttt-ctcggctatttgccaccaaacacttgacaacag-ac 525

                                                                       
Query: 60  cgacagtaatatgcacagataaataaagttttacaattttacccagaagaaaacacaggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgacagtaatatgcacagataaataaagttttacaattttacccagaagaaaacacaggc 465

                                                                       
Query: 120 ccacaaaggttacacagtatcttgacaaagcaacagactaagcaggagaggagtgacaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ccacaaaggttacacagtatcttgacaaagcaacagactaagcaggagaggagtgacaaa 405

                                                                       
Query: 180 cataagacattgcttatagcatataacaggctatggagggtgggggttaaattgaatagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cataagacattgcttatagcatataacaggctatggagggtgggggttaaattgaatagt 345

                                                                       
Query: 240 cctacngngatcggtgacg-acagccatctcgcggccagttctttc-tttcactggatat 297
           |||||   ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 344 cctact-tgatcggtgacgaacagccatctcgcggccagttctttcttttcactggatat 286

                                                                       
Query: 298 gctgttcttccagtttgtcccttcactggatgtgcatgctgttcttccatctctgtgtag 357
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gctgtkcttccagtttgtcccttcactggatgtgcatgctgttcttccatctctgtgtag 226

                                                                       
Query: 358 cagcactgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cagcactgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtc 166

                                                              
Query: 418 gtttgaagccgtgggattcggctcgcgggccaagccgttcgcaaagtagcc 468
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gtttgaagccgtgggattcggctcgcgggccaagccgttcgcaaagtagcc 115

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>gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence
          Length = 1357

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 363  ctgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttg 422
            |||||||| ||||||| ||||||||||||||||| |||||||||||||| || || || |
Sbjct: 1120 ctgctcagtaggagtcatgagctgggctgtccgagtgcatgtccatggacgaatcattcg 1061

                      
Query: 423  aagccgtggg 432
            ||||||||||
Sbjct: 1060 aagccgtggg 1051

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>gb|AY107736.1| Zea mays PCO090313 mRNA sequence
          Length = 1090

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 363 ctgctcaggaggagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttg 422
           |||||||| ||||||| ||||||||||||||||| |||||||||||||| || || || |
Sbjct: 828 ctgctcagtaggagtcatgagctgggctgtccgagtgcatgtccatggacgaatcattcg 769

                     
Query: 423 aagccgtggg 432
           ||||||||||
Sbjct: 768 aagccgtggg 759



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   cagtaatatgcacagataaat 83
            |||||||||||||||||||||
Sbjct: 1064 cagtaatatgcacagataaat 1044

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>ref|XM_450593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 374 gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgt 429
           ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 771 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgt 716



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 221 gggggttaaattgaatagtcctac 244
           ||||||||||||||||||||||||
Sbjct: 881 gggggttaaattgaatagtcctac 858

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 374      gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgt 429
                ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 11686135 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgt 11686080



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 221      gggggttaaattgaatagtcctac 244
                ||||||||||||||||||||||||
Sbjct: 11686245 gggggttaaattgaatagtcctac 11686222

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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                      
Query: 374    gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgt 429
              ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 120769 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgt 120714



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 221    gggggttaaattgaatagtcctac 244
              ||||||||||||||||||||||||
Sbjct: 120879 gggggttaaattgaatagtcctac 120856

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>dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full
           insert sequence
          Length = 1102

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 374 gagtcgtgagctgggctgtccgaatgcatgtccatggatgagtcgtttgaagccgt 429
           ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 771 gagtcatgagctgggctgtctgaatgcatgtccatggatgaatcgttcgaagccgt 716



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 221 gggggttaaattgaatagtcctac 244
           ||||||||||||||||||||||||
Sbjct: 881 gggggttaaattgaatagtcctac 858

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>ref|XM_546550.2| PREDICTED: Canis familiaris similar to Matrilysin precursor (Pump-1
            protease) (Uterine metalloproteinase) (Matrix
            metalloproteinase-7) (MMP-7) (Matrin) (LOC489432), mRNA
          Length = 1045

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 70   atgcacagataaataaagtttt 91
            ||||||||||||||||||||||
Sbjct: 1015 atgcacagataaataaagtttt 1036

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>gb|AC012470.16| Homo sapiens chromosome 10 clone RP11-506P9, complete sequence
          Length = 122543

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 110   aaacacaggcccacaaaggtta 131
             ||||||||||||||||||||||
Sbjct: 31975 aaacacaggcccacaaaggtta 31996

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>emb|AL732567.8| Zebrafish DNA sequence from clone CH211-263A23 in linkage group 6,
             complete sequence
          Length = 152840

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 90    ttacaattttacccagaagaaa 111
             ||||||||||||||||||||||
Sbjct: 60018 ttacaattttacccagaagaaa 59997

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>ref|XM_507654.1| PREDICTED: Pan troglodytes similar to enoyl Coenzyme A hydratase
           domain containing 3 (LOC450300), mRNA
          Length = 1401

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 858 cccagaagaaaacacaggccc 838

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>gb|BC001091.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 3, mRNA
           (cDNA clone IMAGE:3505013), partial cds
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 271 cccagaagaaaacacaggccc 251

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>ref|NM_024693.2| Homo sapiens enoyl Coenzyme A hydratase domain containing 3
           (ECHDC3), mRNA
          Length = 1648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 512 cccagaagaaaacacaggccc 492

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>emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on chromosome 10 Contains
             gene FLJ20909, the gene for a novel protein (MGC35403), a
             novel gene (LOC219731), the 3' end of the UPF2 gene for
             UPF2 regulator of nonsense transcripts homolog (yeast)
             (FLJ38872) and four CpG islands, complete sequence
          Length = 206587

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   cccagaagaaaacacaggccc 121
             |||||||||||||||||||||
Sbjct: 26307 cccagaagaaaacacaggccc 26287

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>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence
          Length = 157246

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  cccagaagaaaacacaggccc 121
            |||||||||||||||||||||
Sbjct: 8301 cccagaagaaaacacaggccc 8281

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>gb|BC009617.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 3, mRNA
           (cDNA clone MGC:16831 IMAGE:3893103), complete cds
          Length = 1609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 460 cccagaagaaaacacaggccc 440

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>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence
          Length = 169125

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   cccagaagaaaacacaggccc 121
             |||||||||||||||||||||
Sbjct: 79871 cccagaagaaaacacaggccc 79851

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>emb|CR624346.1| full-length cDNA clone CS0DC010YB03 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1597

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 509 cccagaagaaaacacaggccc 489

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>emb|CR621986.1| full-length cDNA clone CS0DI005YJ06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1569

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 479 cccagaagaaaacacaggccc 459

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>emb|CR614444.1| full-length cDNA clone CS0DK012YK14 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1065

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 25  cccagaagaaaacacaggccc 5

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>emb|CR612555.1| full-length cDNA clone CS0DA002YJ22 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  cccagaagaaaacacaggccc 121
            |||||||||||||||||||||
Sbjct: 1703 cccagaagaaaacacaggccc 1683

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>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence
          Length = 186812

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   cccagaagaaaacacaggccc 121
             |||||||||||||||||||||
Sbjct: 81974 cccagaagaaaacacaggccc 81994

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>emb|CR601232.1| full-length cDNA clone CS0DD007YE07 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 458 cccagaagaaaacacaggccc 438

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>emb|CR599557.1| full-length cDNA clone CS0DI068YK20 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1545

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 462 cccagaagaaaacacaggccc 442

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>gb|AF275677.1|AF275677 Homo sapiens PP1494 protein mRNA, complete cds
          Length = 1648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 512 cccagaagaaaacacaggccc 492

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>gb|AF289604.1|AF289604 Homo sapiens clone pp8332 unknown mRNA
          Length = 1771

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 494 cccagaagaaaacacaggccc 474

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>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence
          Length = 157200

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   cccagaagaaaacacaggccc 121
             |||||||||||||||||||||
Sbjct: 21464 cccagaagaaaacacaggccc 21444

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>dbj|AK222511.1| Homo sapiens mRNA for enoyl Coenzyme A hydratase domain containing
           3 variant, clone: adSE01048
          Length = 1615

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 477 cccagaagaaaacacaggccc 457

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>dbj|AK024562.1| Homo sapiens cDNA: FLJ20909 fis, clone ADSE00425
          Length = 1588

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cccagaagaaaacacaggccc 121
           |||||||||||||||||||||
Sbjct: 451 cccagaagaaaacacaggccc 431

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>emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in linkage group 11,
             complete sequence
          Length = 137302

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    aaagttttacaattttaccca 104
             |||||||||||||||||||||
Sbjct: 65499 aaagttttacaattttaccca 65519

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>gb|M18000.1|HUMRPS17A Human ribosomal protein S17 gene, complete cds
          Length = 4029

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  cccagaagaaaacacaggccc 121
            |||||||||||||||||||||
Sbjct: 3662 cccagaagaaaacacaggccc 3642

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>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence
          Length = 182866

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    ttccatctctgtgtagcagc 361
              ||||||||||||||||||||
Sbjct: 128746 ttccatctctgtgtagcagc 128727

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>gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosome 14, complete sequence
          Length = 227936

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    tgacaaagcaacagactaagcagg 165
              ||||||||||||||| ||||||||
Sbjct: 192176 tgacaaagcaacagaataagcagg 192199

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>gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, complete sequence
          Length = 173848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   ttctttctttcactggatat 297
             ||||||||||||||||||||
Sbjct: 43543 ttctttctttcactggatat 43562

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>gb|AC147049.2| Pan troglodytes BAC clone RP43-131M1 from 3, complete sequence
          Length = 185806

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     tatttgccccaaacacttgacaac 54
              ||||||||||||| ||||||||||
Sbjct: 133662 tatttgccccaaagacttgacaac 133639

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>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    tatttgccccaaacacttgacaac 54
             ||||||||||||| ||||||||||
Sbjct: 27422 tatttgccccaaagacttgacaac 27399

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>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete
             sequence
          Length = 139086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    taaagttttacaattttacc 102
             ||||||||||||||||||||
Sbjct: 44423 taaagttttacaattttacc 44442

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>emb|AL159151.56| Human DNA sequence from clone RP11-156O2 on chromosome 13, complete
             sequence
          Length = 59116

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   ctgttcttccatctctgtgt 355
             ||||||||||||||||||||
Sbjct: 45267 ctgttcttccatctctgtgt 45286

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>emb|AL034451.26|HS191E19 Human DNA sequence from clone RP1-191E19 on chromosome 6q23.2-24.2,
            complete sequence
          Length = 110885

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 78   ataaataaagttttacaattttac 101
            |||||||||| |||||||||||||
Sbjct: 2492 ataaataaagctttacaattttac 2515

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>emb|X58831.1|CSGDHANC C.sorokiniana gdhANC gene for NADP-specific glutamate dehydrogenase
            (ANC=Ammonium-inducible, Nuclear encoded, Chloroplastic
            isoenzyme)
          Length = 9872

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  gcatgtccatggatgagtcg 418
            ||||||||||||||||||||
Sbjct: 9356 gcatgtccatggatgagtcg 9375

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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
             complete sequence
          Length = 168402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaataaagttttacaatttt 99
             ||||||||||||||||||||
Sbjct: 39721 aaataaagttttacaatttt 39702

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>gb|AC164315.2| Mus musculus BAC clone RP23-18J12 from chromosome 14, complete sequence
          Length = 204011

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 142    tgacaaagcaacagactaagcagg 165
              ||||||||||||||| ||||||||
Sbjct: 136596 tgacaaagcaacagaataagcagg 136573

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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   tgggggttaaattgaatagt 239
             ||||||||||||||||||||
Sbjct: 88195 tgggggttaaattgaatagt 88214

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>gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, complete sequence
          Length = 176815

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    acataagacattgcttatag 198
              ||||||||||||||||||||
Sbjct: 155089 acataagacattgcttatag 155070

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>gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, complete sequence
          Length = 228156

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   cccttcactggatgtgcatg 335
             ||||||||||||||||||||
Sbjct: 29161 cccttcactggatgtgcatg 29142

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>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence
          Length = 168539

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   acataagacattgcttatag 198
             ||||||||||||||||||||
Sbjct: 22008 acataagacattgcttatag 21989

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>gb|AF306554.1|AF306554 Orseolia oryzae mitotype 2 12S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 414

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  taaataaagttttacaattt 98
           ||||||||||||||||||||
Sbjct: 302 taaataaagttttacaattt 283

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>gb|AC092405.2| Papio anubis clone RP41-170F23, complete sequence
          Length = 182902

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   actaagcaggagaggagtga 175
             ||||||||||||||||||||
Sbjct: 14739 actaagcaggagaggagtga 14720

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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 68      atatgcacagataaataaagtttt 91
               ||||||||||||| ||||||||||
Sbjct: 1104352 atatgcacagatatataaagtttt 1104329

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>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22,
            complete sequence
          Length = 165445

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   gataaataaagttttacaat 96
            ||||||||||||||||||||
Sbjct: 3625 gataaataaagttttacaat 3644

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>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence
          Length = 183614

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaataaagttttacaatttt 99
             ||||||||||||||||||||
Sbjct: 19006 aaataaagttttacaatttt 18987

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>dbj|AP001303.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24M9
          Length = 45292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   gttcttccagtttgtccctt 320
             ||||||||||||||||||||
Sbjct: 17465 gttcttccagtttgtccctt 17446

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>emb|BX255891.5| Zebrafish DNA sequence from clone DKEY-263P20 in linkage group 20,
             complete sequence
          Length = 104855

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aataaagttttacaatttta 100
             ||||||||||||||||||||
Sbjct: 25058 aataaagttttacaatttta 25039

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>gb|AC006571.12|AC006571 Homo sapiens, clone hRPK.23_A_1, complete sequence
          Length = 134896

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    ataaataaagttttacaattttac 101
             |||||||||| |||||||||||||
Sbjct: 83539 ataaataaagctttacaattttac 83562

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>emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chromosome X, complete
             sequence
          Length = 136485

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   gccagttctttctttcactg 292
             ||||||||||||||||||||
Sbjct: 27867 gccagttctttctttcactg 27848

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>gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 173453

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    ttctttctttcactggatat 297
              ||||||||||||||||||||
Sbjct: 123254 ttctttctttcactggatat 123273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,602,785
Number of Sequences: 3902068
Number of extensions: 5602785
Number of successful extensions: 93099
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92968
Number of HSP's gapped (non-prelim): 118
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result