ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19n14 |
|---|---|
| Clone Library Name | barley_pub |
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = -3 Query: 593 SGLTSSLAFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 459 SG +SS+AFTP+QG+E+ NP A + Q YFS F ++ Sbjct: 457 SGTSSSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSNMAEFLKV 500
>PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 593 SGLTSSLAFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINN 453 SG SS+AFTP+QG+E+ NP A + Q YFS F ++ + Sbjct: 445 SGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVKS 490
>PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 593 SGLTSSLAFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINN 453 SG SS+AFTP+QG+E+ NP A + Q YFS F ++ + Sbjct: 445 SGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVKS 490
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 38.5 bits (88), Expect = 0.015 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -3 Query: 593 SGLTSSLAFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 459 SG SS+AFTP+QG+E+ NP A + Q YFS F ++ Sbjct: 446 SGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined breast cancer antigen NY-BR-99) Length = 499 Score = 38.5 bits (88), Expect = 0.015 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -3 Query: 593 SGLTSSLAFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRI 459 SG SS+AFTP+QG+E+ NP A + Q YFS F ++ Sbjct: 446 SGTASSVAFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKV 489
>PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31| Length = 518 Score = 36.2 bits (82), Expect = 0.074 Identities = 16/20 (80%), Positives = 18/20 (90%) Frame = -3 Query: 593 SGLTSSLAFTPVQGIELSNP 534 SGL SSL+FTP+QGIEL NP Sbjct: 464 SGLQSSLSFTPIQGIELVNP 483
>NU1M_SAGOE (O78694) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 409 FSSSD*IPTSVTHGLLLIRENVPVSEK*VLWVPLPRRFP 525 F+ +PTS T L LI + +S +LW PLP +P Sbjct: 56 FTKEPLLPTSSTSTLYLIAPTLALSISLLLWTPLPMPYP 94
>TPIS_ANASP (Q8YP17) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 241 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/50 (26%), Positives = 28/50 (56%) Frame = -3 Query: 575 LAFTPVQGIELSNPHAHGNLLGSGTQSTYFSETGTFSRINNRP*VTEVGI 426 L P + + + HG+L+ G Q+ +++E G ++ + P +TE+G+ Sbjct: 40 LLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGV 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,721,023 Number of Sequences: 219361 Number of extensions: 1871691 Number of successful extensions: 3786 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3786 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
