>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
 Frame = -2

Query: 287 MKGLDTDAPHLLANSQMADEECTQIERQFLTEVEHAE---------------ELASTVGQ 153
           +K LD   P+ L  +  A EE   +ERQ   E+EH +               E A T+GQ
Sbjct: 10  LKRLDLRDPNALFETHGA-EEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQ 68

Query: 152 IPD-ATAMPDAVEIIFQYALEYGRHGGV 72
           +   A  + DAV+   QY     + G V
Sbjct: 69  MRRCAEGLVDAVQATDQYCARLRQAGSV 96

>VPS45_RAT (O08700) Vacuolar protein sorting-associated protein 45 (rvps45)|
          Length = 570

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
 Frame = -2

Query: 227 ECTQIERQFLTEVEHAEELAST--VGQIPDATAMPDAVEIIFQYALEYGRHG-------- 78
           E +++E++   + +H+  L +   + Q P  T   DAV ++  YAL Y RH         
Sbjct: 349 EVSEVEQELACQNDHSSALQNVKRLLQNPKVTEF-DAVRLVMLYALHYERHSSNSLPGLI 407

Query: 77  ------GVVEMMGKVATAMSRY 30
                 GV E   K+ +A+  Y
Sbjct: 408 VDLRSKGVAEKYRKLVSAVVEY 429

>VPS45_MOUSE (P97390) Vacuolar protein sorting-associated protein 45 (mVps45)|
          Length = 570

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
 Frame = -2

Query: 227 ECTQIERQFLTEVEHAEELAST--VGQIPDATAMPDAVEIIFQYALEYGRHG-------- 78
           E +++E++   + +H+  L +   + Q P  T   DAV ++  YAL Y RH         
Sbjct: 349 EVSEVEQELACQNDHSSALQNVKRLLQNPKVTEF-DAVRLVMLYALHYERHSSNSLPGLI 407

Query: 77  ------GVVEMMGKVATAMSRY 30
                 GV E   K+ +A+  Y
Sbjct: 408 VDLRSKGVAEKYRKLVSAVVEY 429

>ATG1_YARLI (Q6C7U0) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 710

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 188 EHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGKVATAMSRYTKAICLL 9
           E  E   +   ++   T    A ++IF  ALE  R   V E+ G      S YT +I +L
Sbjct: 613 ESLERAETVKKKVSSGTTHTTAEKLIFDRALEMSRDAAVQEISGDFTGCESAYTTSIWML 672

>TRUB_BACHD (Q9KA80) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 304

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = -2

Query: 221 TQIERQFLTEVEHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGKVATA 42
           T+  +Q   E    + LA+ VG+I     M  AV++  +   EY R G  VE   +  T 
Sbjct: 90  TKTIQQPFVEAVVDQVLATFVGEIKQIPPMYSAVKVRGKRLYEYARAGITVERPERTVTI 149

Query: 41  MSR-------YTKAICLLRF 3
            S        Y + +C  RF
Sbjct: 150 FSLERMSDIVYEEGVCRFRF 169

>AROC_SYNP6 (Q5N2I0) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 215 IERQFLTEVEHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGK 54
           +E Q   E    E++ ST+ + PD    P  +++I     E    GGVVE + +
Sbjct: 162 LEGQIDPETVTLEQVESTIVRCPDEAIAPQMIDLIEAIGREGDSLGGVVECVAR 215

>ASSY_LISMF (Q71XS4) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 404

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -2

Query: 278 LDTDAPHLL-ANSQMADEECTQIERQFLTEVEHAEELASTVGQIPDATAMPDAVEIIFQY 102
           +D D P  +  N      EC  +E  + T  E A +L  ++   PD    PD VEI F  
Sbjct: 167 IDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTVSLEDAPDT---PDIVEITFDA 223

Query: 101 ALEYGRHGGVVEMMGKVAT 45
            +    +G  + +   + T
Sbjct: 224 GIPISLNGENMSLANLILT 242

>PDR5_YEAST (P33302) Suppressor of toxicity of sporidesmin|
          Length = 1511

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 221 TQIERQFLTEVEHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGV 72
           T+  R +      A+  AS + +IP    +     IIF + +++ R+GGV
Sbjct: 585 TEKHRTYSLYHPSADAFASVLSEIPSKLIIAVCFNIIFYFLVDFRRNGGV 634

>STRN3_HUMAN (Q13033) Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)|
          Length = 797

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 275 DTDAPHLLANSQMADEECTQIERQFLTEVEHAEELASTVGQ 153
           DT+AP    NSQ+  ++  Q+ RQ+L EV + + +     Q
Sbjct: 158 DTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQ 198

>LAMA4_HUMAN (Q16363) Laminin alpha-4 chain precursor|
          Length = 1823

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -2

Query: 290 TMKGLDTDAPHLLANSQMADEECTQIERQFLTEVEHAEELASTVGQIPDATAMPDAVEII 111
           TMK L +D   L+     A  +   ++++ +  + HA +L      +  A  M D ++ I
Sbjct: 345 TMKSLLSDVEELVEKENQASRKGQLVQKESMDTINHASQL------VEQAHDMRDKIQEI 398

Query: 110 FQYALEYG 87
               L YG
Sbjct: 399 NNKMLYYG 406

>COG1_HUMAN (Q8WTW3) Conserved oligomeric Golgi complex component 1|
          Length = 980

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
 Frame = -2

Query: 287 MKGLDTDAPHLLANSQMADEECTQIERQFLTEVEHAE---------------ELASTVGQ 153
           +K LD   P  L  +  A EE   +ERQ   E+EH +               E A T+GQ
Sbjct: 10  LKRLDLRDPAALFETHGA-EEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQ 68

Query: 152 IPD-ATAMPDAVEIIFQYALEYGRHG 78
           +   A  + DAV+   QY     + G
Sbjct: 69  MRRCAVGLVDAVKATDQYCARLRQAG 94

>YNH5_CAEEL (P32743) Hypothetical protein R107.5|
          Length = 274

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 323 SAARESPSHDITMKGLDTDAPHLLANSQMADEECTQIE 210
           S+   SP+    +  LD D+P+ L N  + DEE  + E
Sbjct: 237 SSPMASPTGSSQIVELDPDSPNSLTNGSVTDEEMMEFE 274

>CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2|
          Length = 306

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 105 LKYYFDRVGHRCSIRYLPYSACKFFR 182
           ++Y F R+G    +RYLP   C F R
Sbjct: 161 IRYMFGRLGPMDRVRYLPEKNCAFVR 186

>A1AT_CYPCA (P32759) Alpha-1-antitrypsin homolog precursor|
          Length = 372

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 326 ASAARESPSHDITMKGLDTDAPHLLANSQMADEECTQIERQFLTEVEH 183
           AS   E   H I M G   +A  L A + +A  E  ++  QFL +V+H
Sbjct: 68  ASQVNEGYEHLIHMLGHSREAMQLEAGAGVAIREGFKVVDQFLKDVQH 115

>Y914_MYCBO (P59969) Putative HTH-type transcriptional regulator Mb0914c|
          Length = 882

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 134 MPDAVEIIFQYALEYGRHGGVVEMMGKVATAMSRYTKAI 18
           MPDA+E++   A E G H   V ++G  A A+ + T+ +
Sbjct: 723 MPDAMELLAGLAGEVGSHSEGVRLLG-AAAALRQQTRQV 760

>Y890_MYCTU (Q10550) Putative HTH-type transcriptional regulator Rv0890c/MT0914|
          Length = 882

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 134 MPDAVEIIFQYALEYGRHGGVVEMMGKVATAMSRYTKAI 18
           MPDA+E++   A E G H   V ++G  A A+ + T+ +
Sbjct: 723 MPDAMELLAGLAGEVGSHSEGVRLLG-AAAALRQQTRQV 760

>TRUB_LACLA (Q9CGH0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -2

Query: 221 TQIERQFLTEVEHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGKVATA 42
           T +ER+ LTE E    + + +G+I     M  AV+I  +   EY R G  V+   +  T 
Sbjct: 93  TPVERE-LTESEIDSVMKNFIGKIKQIPPMYSAVKINGKKLYEYARAGQTVDRPTREITI 151

Query: 41  MS 36
            S
Sbjct: 152 KS 153

>AKR1_GIBZE (Q4I8B6) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1)
          Length = 702

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 27  CIPRHGRRHFPHHLNNTTMPPI-F*CILKYYFDRVGHRCS--IRYLPYSACKFFRMFNFS 197
           C+  +  RHF  +L + TM  + +  +L YYFD V    S     L  + CK+    +++
Sbjct: 464 CVGINNHRHFFFYLISLTMGIVSYDFLLYYYFDTVSKNASETCNVLSPTLCKYINADSYT 523

Query: 198 EKLPL 212
             L +
Sbjct: 524 SILAI 528

>CCA_BACSU (P42977) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 397

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 164 TVGQIPDAT-AMPDAVEIIFQYALEYGRHGGVV 69
           T+G +  AT A PD VE +FQ  ++ G+  G +
Sbjct: 37  TIGDVDIATDAAPDQVERLFQRTVDVGKEHGTI 69

>VPS45_HUMAN (Q9NRW7) Vacuolar protein sorting-associated protein 45 (h-VPS45)|
           (hlVps45)
          Length = 570

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 16/82 (19%)
 Frame = -2

Query: 227 ECTQIERQFLTEVEHAEELAST--VGQIPDATAMPDAVEIIFQYALEYGRHG-------- 78
           E +++E++   + +H+  L +   + Q P  T   DA  ++  YAL Y RH         
Sbjct: 349 EVSEVEQELACQNDHSSALQNIKRLLQNPKVTEF-DAARLVMLYALHYERHSSNSLPGLM 407

Query: 77  ------GVVEMMGKVATAMSRY 30
                 GV E   K+ +A+  Y
Sbjct: 408 MDLRNKGVSEKYRKLVSAVVEY 429

>XPO1_SCHPO (P14068) Exportin-1 (Chromosome region maintenance protein 1)|
           (Caffeine resistance protein 2)
          Length = 1078

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 189 NFSEKLPLNLCAFFISHLR 245
           +F + L L LCAFF SHLR
Sbjct: 306 DFIQNLALFLCAFFSSHLR 324

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -2

Query: 311  ESPSHDITMKGLDTDAPHLLANSQMADEECTQIERQFLTEVEHAEELASTVGQIPD 144
            E    D+  + L T  P +++  + A+EE T +    L   +H E +   + +  D
Sbjct: 1207 EKKQEDVKKEDLTTGIPQMVSKPEKAEEEKTPVPVSRLPRSDHVEAVREKIEKEDD 1262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,833,404
Number of Sequences: 219361
Number of extensions: 896985
Number of successful extensions: 2624
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2621
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)