Clone Information

BLAST Search Result

Clone Name	rbaal19n01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alterna...	37	0.033
2	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	37	0.057
3	WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7...	36	0.074
4	LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alterna...	35	0.13
5	NCPR_PHAAU (P37116) NADPH--cytochrome P450 reductase (EC 1.6.2.4...	35	0.13
6	ARLY_PROMM (Q7TV86) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	35	0.17
7	NFAC2_HUMAN (Q13469) Nuclear factor of activated T-cells, cytopl...	34	0.28
8	ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-...	33	0.63
9	FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hF...	33	0.63
10	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	33	0.82
11	ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor AT...	33	0.82
12	ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor AT...	33	0.82
13	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	33	0.82
14	ARLY_SYNPX (Q7TTY1) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	32	1.1
15	MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc fin...	32	1.4
16	ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor AT...	32	1.8
17	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	32	1.8
18	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	32	1.8
19	CASB_PIG (P39037) Beta-casein precursor	31	2.4
20	TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box prote...	31	2.4
21	TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)	31	2.4
22	NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytopl...	31	2.4
23	ARLY_HALMA (Q5UZ47) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	31	2.4
24	WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.1...	31	3.1
25	IE18_PRVKA (P33479) Immediate-early protein IE180	31	3.1
26	RIMK_XANOR (Q5H3K7) Ribosomal protein S6 modification protein	30	4.1
27	NCPR_CATRO (Q05001) NADPH--cytochrome P450 reductase (EC 1.6.2.4...	30	4.1
28	EF1D1_ARATH (P48006) Elongation factor 1-delta 1 (EF-1-delta 1) ...	30	4.1
29	FZD5_MOUSE (Q9EQD0) Frizzled 5 precursor (Frizzled-5) (Fz-5) (mFz5)	30	4.1
30	DCP1A_MOUSE (Q91YD3) mRNA decapping enzyme 1A (EC 3.-.-.-) (Tran...	30	4.1
31	WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7...	30	5.3
32	CF150_HUMAN (Q8N884) Protein C6orf150	30	5.3
33	AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathri...	30	5.3
34	CASZ1_HUMAN (Q86V15) Castor homolog 1 zinc finger protein (Casto...	30	5.3
35	MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)	30	5.3
36	YOPE_YEREN (P31492) Outer membrane virulence protein yopE	30	5.3
37	ARLY_THET2 (Q72GZ4) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	30	5.3
38	BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)	30	5.3
39	YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5	30	6.9
40	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	30	6.9
41	CARB_PSEPK (Q88DU6) Carbamoyl-phosphate synthase large chain (EC...	30	6.9
42	GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)	30	6.9
43	LIVH_SALTY (P0A2J1) High-affinity branched-chain amino acid tran...	30	6.9
44	LIVH_SALTI (P0A2J2) High-affinity branched-chain amino acid tran...	30	6.9
45	LIVH_ECOLI (P0AEX7) High-affinity branched-chain amino acid tran...	30	6.9
46	LIVH_ECO57 (P0AEX8) High-affinity branched-chain amino acid tran...	30	6.9
47	KDSA_ERWCT (Q6D547) 2-dehydro-3-deoxyphosphooctonate aldolase (E...	30	6.9
48	CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ...	29	9.1
49	CARB_PSESM (Q87WP4) Carbamoyl-phosphate synthase large chain (EC...	29	9.1
50	K0319_MOUSE (Q5SZV5) Protein KIAA0319 precursor	29	9.1
51	AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clath...	29	9.1
52	SOCS6_MOUSE (Q9JLY0) Suppressor of cytokine signaling 6 (SOCS-6)...	29	9.1
53	SOCS6_HUMAN (O14544) Suppressor of cytokine signaling 6 (SOCS-6)...	29	9.1

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
 Frame = +2

Query: 179 PLLSLAAEIRAPLAMP-PINAFFQS----YCPRTLSTPYSMPTYTPATAPQYAPSLHIFF 343
           P +   A IR  +  P P +++  S    Y P T  TP   P YTP+ AP Y PS    +
Sbjct: 391 PRVVTTASIRPSVYQPVPASSYSPSPGANYSP-TPYTPSPAPAYTPSPAPTYTPSPAPTY 449

Query: 344 SVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAAS 523
           S   +  +   P    +   SAA    P+    R P     S     +   ST      +
Sbjct: 450 SPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTTVSKQT 509

Query: 524 PARGILPVPEPSRPVSLPISR 586
             RG  P   P+ P   P++R
Sbjct: 510 LPRG-APAYNPTGPQVTPLAR 529

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
 Frame = +2

Query: 146 PPVMASWAILFPLLSLAA-EIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYA 322
           PP+ +S A+  P     A   R+  A+PP+    ++  P  + TP S+P   P + P  A
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP-PVPTPPSLPPSAPPSLPPSA 435

Query: 323 PSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMST 502
           P               +LP            + AP AP L  P +  ++  LP  M  + 
Sbjct: 436 P--------------PSLP------------MGAPAAPPL--PPSAPIAPPLPAGMPAAP 467

Query: 503 LLDPAASPARGILPVPEPSRPVS 571
            L PAA PA    P P P+ PV+
Sbjct: 468 PLPPAA-PAPPPAPAPAPAAPVA 489

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>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1243

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
 Frame = +2

Query: 212  PLAMPPINAFFQSYCP---RTLSTPYSMPTYTPATAPQYAPSLHIFFSVC--SSLRFETL 376
            P+  PP +     + P   +  S P   PT +P       P   +  S C  SSL   + 
Sbjct: 830  PITSPPCHPSPSPFSPISSQVSSNPSPHPTSSPLPFSSSTPEFPVPLSQCPWSSLPTTSP 889

Query: 377  PLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPR-------SMAMSTLLDPAASPARG 535
            P +  S   S  TL +P  P     S+   ++  P        S+A+ T+     SP+ G
Sbjct: 890  PTF--SPTCSQVTLSSPFFPPCPSTSSFPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPG 947

Query: 536  ILPVPEPSRPVSLP 577
            +L    P+ P  LP
Sbjct: 948  LLSQSPPAPPSPLP 961

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>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher)
          Length = 727

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 5/141 (3%)
 Frame = +2

Query: 179 PLLSLAAEIRAPLAMP-PINAFFQS----YCPRTLSTPYSMPTYTPATAPQYAPSLHIFF 343
           P +   A IR  +  P P + +  S    Y P T  TP   P YTP+ AP Y PS    +
Sbjct: 395 PRVVTTASIRPSVYQPVPASTYSPSPGANYSP-TPYTPSPAPAYTPSPAPAYTPSPVPTY 453

Query: 344 SVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAAS 523
           +   +  +   P    + A S A    P  P  R P     S     +   ST      +
Sbjct: 454 TPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSISKQT 513

Query: 524 PARGILPVPEPSRPVSLPISR 586
             RG  P   P+ P   P++R
Sbjct: 514 LPRG-GPAYTPAGPQVPPLAR 533

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>NCPR_PHAAU (P37116) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R)
          Length = 690

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
 Frame = +2

Query: 182 LLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQY-----------APS 328
           L+ + AE   P A PP+  FF +  PR     YS+ + +P  APQ             P+
Sbjct: 440 LVEVMAEF--PSAKPPLGVFFAAIAPRLQPRYYSISS-SPRFAPQRVHVTCALVYGPTPT 496

Query: 329 LHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRL 466
             I   VCS+        W ++   S  +    +API  +PS  +L
Sbjct: 497 GRIHKGVCST--------WMKNAIPSEKSQDCSSAPIFIRPSNFKL 534

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>ARLY_PROMM (Q7TV86) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 470

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +1

Query: 94  VARLGEVVDELDGGRDGASGDGVLGDLVPFVVARGRDQGAACDASNQRVFPVILSADPFH 273
           +A LG V  +L  GR  +  D V  DL  ++  R  D     D   +R    +L+    H
Sbjct: 101 IALLGPVGKKLHTGR--SRNDQVGTDLRLWLRRRLDD----LDCELERFQHALLTQAESH 154

Query: 274 --SILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGHPAGA 426
             +++  Y H   + P+C  LAH L   +E+  RD   L+ V G +   P GA
Sbjct: 155 RQTLIPGYTHLQRAQPLC--LAHHLLAYIEMIQRDRDRLKDVRGRVNISPLGA 205

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>NFAC2_HUMAN (Q13469) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell|
           transcription factor NFAT1) (NFAT pre-existing subunit)
           (NF-ATp)
          Length = 925

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
 Frame = +2

Query: 179 PLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMP----TYTPATAPQYAPSLHIFFS 346
           PL  +AA  R  L +P    + +  C    S+  S      T++P T+P  +P+      
Sbjct: 141 PLAGVAASPRFTLPVPGFEGYREPLCLSPASSGSSASFISDTFSPYTSPCVSPNNGGPDD 200

Query: 347 VCSSLRFETLPLW---RQSKASSAATLQAPTAPILR-----KPSTVRLSSGLPRSMAMS- 499
           +C   +F+ +P     R S   S  T  A  + + R     +P++   S G  R  + + 
Sbjct: 201 LCP--QFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAE 258

Query: 500 --TLLDPAASPARGILPVPEPSRPVS 571
               L P ASP R   P P+PS  V+
Sbjct: 259 ALVALPPGASPQRSRSPSPQPSSHVA 284

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>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1)
          Length = 487

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
 Frame = +2

Query: 374 LPLWRQSKASSA----ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGIL 541
           +PL + ++ +SA    A+LQ P   +    S+V +   +P S   ST++  A S  R I+
Sbjct: 133 IPLAQTAQPTSAIVRPASLQVPNVLLTSSDSSVIIQQAVP-SPTSSTVITQAPSSNRPIV 191

Query: 542 PVPEP-----------SRPVSLPIS 583
           PVP P           + PV++P S
Sbjct: 192 PVPGPFPLLLHLPNGQTMPVAIPAS 216

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>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)|
          Length = 585

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 30/93 (32%), Positives = 37/93 (39%)
 Frame = +2

Query: 293 YTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSS 472
           YTP   P Y   L    SVC   +    PL RQ   +    +     P+L + + V L  
Sbjct: 90  YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEV-LCM 148

Query: 473 GLPRSMAMSTLLDPAASPARGILPVPEPSRPVS 571
              RS A  T   P   PA+  LP P P  P S
Sbjct: 149 DYNRSEA--TTAPPRPFPAKPTLPGP-PGAPAS 178

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +2

Query: 395  KASSAATLQAPTAPILRKPSTVRLSSGLPR------SMAMSTLLDPAASPARGILPVPEP 556
            K  ++ T   PT  ++ K STV + S  P       S+  S+ LD  A P+    P P P
Sbjct: 2275 KEPASETPAVPTPRVVSKTSTVSMPSSAPALTSKVFSLFRSSSLDSPAQPSPPSPPPPPP 2334

Query: 557  SRPVSLP 577
              P  LP
Sbjct: 2335 PPPPPLP 2341

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>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (MXBP protein)
          Length = 487

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
 Frame = +2

Query: 374 LPLWRQSKASSA----ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGIL 541
           +PL + ++ +SA    A+LQ P   +    S+V +   +P S   ST++  A S  R I+
Sbjct: 133 VPLAQTAQPTSAIVRPASLQVPNVLLTSSDSSVIIQQAVP-SPTSSTVITQAPSSNRPIV 191

Query: 542 PVPEP-----------SRPVSLPIS 583
           PVP P           + PV++P S
Sbjct: 192 PVPGPFPLLLHLPNGQTMPVAIPAS 216

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>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (HB16)
          Length = 487

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
 Frame = +2

Query: 374 LPLWRQSKASSA----ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGIL 541
           +PL + ++ +SA    A+LQ P   +    S+V +   +P S   ST++  A S  R I+
Sbjct: 133 VPLAQTAQPTSAIVRPASLQVPNVLLTSSDSSVIIQQAVP-SPTSSTVITQAPSSNRPIV 191

Query: 542 PVPEP-----------SRPVSLPIS 583
           PVP P           + PV++P S
Sbjct: 192 PVPGPFPLLLHLPNGQTMPVAIPAS 216

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
 Frame = +2

Query: 227  PINAFFQSYCPRTLSTPYSMPTYTPA------TAPQYAPSLHIFFSVCSSLRFETLPLWR 388
            P +  ++ Y P +     S PTY+P       T+PQY+P+    +S  S     + P + 
Sbjct: 1709 PTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPT-SPQYSPSSPTYTPSSPTYN 1767

Query: 389  QSKASSAATLQ-APTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRP 565
             +   + ++ Q +PT+P    P++   +   P+    S    P+ +   G      PS P
Sbjct: 1768 PTSPRAFSSPQYSPTSPTY-SPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSP 1826

Query: 566  VSLPIS 583
               P S
Sbjct: 1827 TYSPSS 1832

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>ARLY_SYNPX (Q7TTY1) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 471

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = +1

Query: 94  VARLGEVVDELDGGRDGASGDGVLGDLVPFVVARGRDQGAACDASNQRVFPVILSADPFH 273
           +A +G V  +L  GR   S +  +G  +   + R  D+    D   QR+   +L     H
Sbjct: 101 IALVGSVGKKLHTGR---SRNDQVGTDLRLWLRRRLDE---IDGDLQRLQRALLDQADRH 154

Query: 274 --SILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGHPAGA 426
             +++  Y H   + P+C  LAH L   +E+  RD   L  V G +   P GA
Sbjct: 155 QSTMIPGYTHLQRAQPLC--LAHHLLAYIEMLQRDRQRLGDVRGRVNICPLGA 205

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>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +2

Query: 224 PPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLP-LWRQSKA 400
           PP+ A  ++      S P S+PT  PA+ P+ AP       V SS     LP L  + +A
Sbjct: 554 PPLPAVIRN----APSRPPSLPTPRPASQPRKAP-------VISST--PKLPALAAREEA 600

Query: 401 SSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASP-ARGILPVPEP 556
           S++  LQ P AP  RKP+   + +   R   +   L P+  P ++    VP P
Sbjct: 601 STSRLLQPPEAP--RKPANTLVKTA-SRPAPLVQQLSPSLLPNSKSPREVPSP 650

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>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2)
          Length = 487

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
 Frame = +2

Query: 410 ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEP----------- 556
           A+LQ P   +    S+V +   +P S   ST++  A S  R I+PVP P           
Sbjct: 149 ASLQVPNVLLTSSDSSVIIQQAIP-SPTSSTVITQAPSSNRPIVPVPGPFPLLLHLPNGQ 207

Query: 557 SRPVSLPIS 583
           + PV++P S
Sbjct: 208 TMPVAIPAS 216

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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 25/95 (26%), Positives = 38/95 (40%)
 Frame = +2

Query: 281  SMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTV 460
            S+P +TPA     +P  ++       L   T+P           +   PT+ +  KPS+ 
Sbjct: 3141 SLPGFTPANTALTSPKPNLM-----GLPSTTVP-----------SPGLPTSGLPNKPSSA 3184

Query: 461  RLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRP 565
             LSS  P    M+    P   P +   PV +P  P
Sbjct: 3185 SLSSPTPAQATMAMAPQPPPQPQQPQPPVQQPPPP 3219

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
 Frame = +2

Query: 149  PVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPS 328
            P   S++   P  S  +   +P + P  +A   SY P + S   + P+Y+P T+P Y+P+
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTS-PSYSATSPSYSPTSPSYSPTSPSYSP-TSPSYSPT 1637

Query: 329  LHIFFSVCSSLRFETLPLWRQSKASSAAT--LQAPTAPILRKPSTVRLSSGLPRSMAMST 502
                +S  S     T P +  +  S + T    +PT+P    P++   S   P     S 
Sbjct: 1638 -SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP 1695

Query: 503  LLDPAASPARGILPVPEPSRPVSLPIS 583
               P +       P   P+ P   P S
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPTS 1722

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>CASB_PIG (P39037) Beta-casein precursor|
          Length = 232

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 416 LQAPTAPILRKPSTVRLSSGLP---RSMAMSTLL---DPAASPARGILPVPEPSRPVSLP 577
           L  P A +L  P  V     +P   R M    LL   DP   P +G  PVP+P  PV  P
Sbjct: 177 LSLPQAKVLPVPQQV-----VPFPQRDMPFQALLLYQDPLLGPLQGFYPVPQPVAPVYNP 231

Query: 578 I 580
           +
Sbjct: 232 V 232

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>TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 741

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 5/166 (3%)
 Frame = +2

Query: 116  LMNSTAVAMAP-----PVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPY 280
            ++ S  +AM+P     P   ++       S AA   +    P +N    S  PR   +PY
Sbjct: 584  VLASQGLAMSPFGSLFPYPYTYMAAAAAASTAAASSSVHRHPFLN--LNSMRPRLRYSPY 641

Query: 281  SMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTV 460
            S+P   P +               SSL    LP    S AS+A  L    A +   P++V
Sbjct: 642  SIPVPVPDS---------------SSLLATALP----SMASAAGPLDGKAAALAASPASV 682

Query: 461  RLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPISRLALG 598
             + SG   +   STL   + S +  +    E +      I RL  G
Sbjct: 683  AVDSGSELNSRSSTLSSGSVSLSPKLCSEKEAATNELQSIQRLVSG 728

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>TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 743

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 31/114 (27%), Positives = 45/114 (39%)
 Frame = +2

Query: 257 PRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAP 436
           PR   +PYS+P   P +               SSL    LP    S AS+A  L   +A 
Sbjct: 636 PRLRYSPYSIPVPVPDS---------------SSLLATALP----SMASAAGPLDGKSAV 676

Query: 437 ILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPISRLALG 598
           +   P++V + SG   +   STL   + S +  +    E +      I RL  G
Sbjct: 677 LAASPASVAVDSGSELNSRSSTLSSGSVSLSPKLCSEKEAATSELQSIQRLVSG 730

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>NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell|
           transcription factor NFAT1) (NFAT pre-existing subunit)
           (NF-ATp)
          Length = 1064

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
 Frame = +2

Query: 182 LLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMP----TYTPATAPQYAPSLHIFFSV 349
           L  +AA  R  L +P    + +  C    S+  S      T++P T+P  +P+      +
Sbjct: 144 LAGVAASPRFTLPVPGYEGYREPLCLSPASSGSSASFISDTFSPYTSPCVSPNNAGPDDL 203

Query: 350 CSSLRFETLPLW---RQSKASSAATLQAPTAPILR-----KPSTVRLSSGLPRSMAMSTL 505
           C   +F+ +P     R S   S  T  A  + + R     +P++   S G  R  + +  
Sbjct: 204 CP--QFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAEA 261

Query: 506 LD---PAASPARGILPVPEPSRPVS 571
           L    PAASP R   P P+PS  V+
Sbjct: 262 LVAPLPAASPQRSRSPSPQPSPHVA 286

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>ARLY_HALMA (Q5UZ47) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 499

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 409 GHPAGADGADLEEAVDGAVEQRVAEVDGDVH 501
           GH A  DG D+ EA++ AV +RV    G +H
Sbjct: 83  GHDALPDGEDVHEAIESAVIERVGPDGGKMH 113

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>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
 Frame = +2

Query: 203  IRAPLAMP-PINAFFQSYCPRTLSTPYSMPTYTPAT-APQYAPSLHIFFSVCSSLRFETL 376
            I +P   P P +    + CP+  S+   +P+ + A+  P  +PSL       S L F   
Sbjct: 824  ITSPSCHPYPFSQVSSNPCPQAPSS--LLPSSSGASQVPFPSPSL----PTSSPLPFS-- 875

Query: 377  PLWRQSKASSAATLQAPTAPILRKPSTVR---LSSGLPRSMAMSTLLDPAASPARGILPV 547
            P + Q     A+    P+ P L  PST     LS     S+A+ T+     SP+ G+L  
Sbjct: 876  PSYPQVPLHPASLPTCPSPPPL--PSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQ 933

Query: 548  PEPSRPVSLPISRLALGS 601
              P+ P  LP   L L S
Sbjct: 934  SPPAPPGPLPSMPLPLAS 951

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 425 PTAPILRK--PSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRP 565
           P AP+ R   P +    +  PR  A S     AASPA    P PEP+RP
Sbjct: 407 PGAPLARAGPPPSPPAPAAAPRPSASSASSSAAASPA----PAPEPARP 451

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>RIMK_XANOR (Q5H3K7) Ribosomal protein S6 modification protein|
          Length = 295

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
 Frame = +1

Query: 112 VVDELDGGRDGAS-GDGVLGDLVPFVVARGRDQGAACD-ASNQRVFPVILSADPFHSILH 285
           +V E  G  +GA     V+GD V   VA  R Q A  D  SN  +    + AD       
Sbjct: 175 IVQEFIGEAEGADLRCFVVGDRV---VAAMRRQAAEGDFRSNLHLGGTAVVADATELERE 231

Query: 286 AYIHSSNSTPICALLAHFLQCL---LELALRDTPTLEAVEGVLGGHPAGADGADLEEAV 453
             + S+ +  +       ++     L L +  TP LE VEGV G   AGA    LE++V
Sbjct: 232 VAVRSARALGLAVAGVDLIRSKRGPLVLEVNSTPGLEGVEGVCGVDVAGAIVQHLEQSV 290

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>NCPR_CATRO (Q05001) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R)
          Length = 714

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
 Frame = +2

Query: 182 LLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAP-----------QYAPS 328
           LL + AE   P A PP+  FF +  PR     YS+ + +P  AP           +  P 
Sbjct: 464 LLEVMAEF--PSAKPPLGVFFAAIAPRLQPRFYSISS-SPRMAPSRIHVTCALVYEKTPG 520

Query: 329 LHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLL 508
             I   VCS+     +PL      S         API  + S  +L +  P+   +    
Sbjct: 521 GRIHKGVCSTWMKNAIPLEESRDCS--------WAPIFVRQSNFKLPAD-PKVPVIMIGP 571

Query: 509 DPAASPARGIL 541
               +P RG L
Sbjct: 572 GTGLAPFRGFL 582

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>EF1D1_ARATH (P48006) Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation|
           factor 1B-beta 1) (eEF-1B beta 1)
          Length = 231

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -2

Query: 363 RKLEQTLKKMCKEGAYWGAVAGVYVGMEYGVERVR 259
           +KLE+ +K +  EG +WGA   V VG  YG+++++
Sbjct: 159 KKLEEAVKSIQMEGLFWGASKLVPVG--YGIKKLQ 191

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>FZD5_MOUSE (Q9EQD0) Frizzled 5 precursor (Frizzled-5) (Fz-5) (mFz5)|
          Length = 577

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 26/87 (29%), Positives = 34/87 (39%)
 Frame = +2

Query: 293 YTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSS 472
           YTP   P Y   L    SVC   +    PL RQ   +    +     P+L   + V L  
Sbjct: 90  YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGGDAEV-LCM 148

Query: 473 GLPRSMAMSTLLDPAASPARGILPVPE 553
              RS    T   P + PA+  LP P+
Sbjct: 149 DYNRS---ETTASPKSFPAKPTLPGPQ 172

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>DCP1A_MOUSE (Q91YD3) mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription|
           factor SMIF) (MAD homolog 4-interacting transcription
           coactivator 1) (Smad4-interacting transcriptional
           co-activator)
          Length = 602

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
 Frame = +2

Query: 188 SLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPSLHIFFS---VCSS 358
           +++A +   +  P + +  Q+  P   S P  +P+  P       P+     S   +  S
Sbjct: 466 AVSASLSNMVLAPTLQSMQQNQDPEVFSQPKVLPSAIPIAGSPLVPATTTAVSSVLLSPS 525

Query: 359 LRFETLPLWR--QSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLL 508
           +  +T+P     + KASS + L   TA   RKPS +     L +S    TL+
Sbjct: 526 VFQQTVPRAADLERKASSPSPLTVGTAESQRKPSII-----LSKSQLQDTLI 572

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>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 377  PLWRQSKASSAATLQAPTAPILRKPSTVR---LSSGLPRSMAMSTLLDPAASPARGILPV 547
            P + Q   S  +    P+ P L  PST     LS     S+A+ T+     SP+ G+L  
Sbjct: 876  PSYPQDPLSPTSLPVCPSPPSL--PSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQ 933

Query: 548  PEPSRPVSLPISRLALGS 601
              P+ P  LP   L+L S
Sbjct: 934  SPPAPPGPLPSLPLSLAS 951

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>CF150_HUMAN (Q8N884) Protein C6orf150|
          Length = 522

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/63 (34%), Positives = 26/63 (41%)
 Frame = +2

Query: 392 SKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVS 571
           S A+SA   +    P  R+P+  R  S   R    ST   P   P      VP P  PVS
Sbjct: 94  SDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGP----WDVPSPGLPVS 149

Query: 572 LPI 580
            PI
Sbjct: 150 API 152

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>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
 Frame = +2

Query: 125 STAVAMAPPVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYT-- 298
           +TA A   PV A+          A    +  A P ++ F     P   S P   PT +  
Sbjct: 454 ATAPATPAPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMK--PPETSAPVVTPTASTA 511

Query: 299 ---PATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKP---STV 460
              PATAP  AP+  +  +  ++           + A++A T  AP A  +      S  
Sbjct: 512 PPVPATAPSPAPTA-VAATAATTTAAAAATTTATTSAAAATTAAAPPALDIFGDLFDSAP 570

Query: 461 RLSSGLPRSMAMSTLL---DPAASPARGILPVPEPSRPVSL 574
            +++     +A S  L   D  +SP RG  PVPE S    L
Sbjct: 571 EVAAASKPDVAPSIDLFGTDAFSSPPRGASPVPESSLTADL 611

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>CASZ1_HUMAN (Q86V15) Castor homolog 1 zinc finger protein (Castor-related|
           protein)
          Length = 1044

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +2

Query: 377 PLWRQSKAS-SAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPE 553
           P  +QS AS +AAT      P   KP   ++S  LP+ +  S  L  A S +   LP P 
Sbjct: 620 PTSQQSSASLAAATAATEAGPSATKPPNSKISGLLPQGLPGSIPLALALSNSG--LPTPT 677

Query: 554 PSRPV-------SLPISRLAL 595
           P  P+       SLP+   +L
Sbjct: 678 PYFPILAGRGSTSLPVGTPSL 698

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>MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)|
          Length = 978

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
 Frame = +2

Query: 179 PLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSS 358
           PL S  + +++P++ PP      S+C  ++ +P S P   P  +   +P+ ++  S CS 
Sbjct: 260 PLSSPLSSMKSPISSPP------SHC--SVKSPVSSPNNVPLRSSVSSPA-NLNNSRCS- 309

Query: 359 LRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGI 538
                  +   S  ++ +TL +PTA      STV  S G P S A S     A++ A  I
Sbjct: 310 -------VSSPSNTNNRSTLSSPTA------STVG-SIGSPISNAFSYTTSGASAGAGAI 355

Query: 539 LP-VPEP 556
              VP P
Sbjct: 356 QDMVPSP 362

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>YOPE_YEREN (P31492) Outer membrane virulence protein yopE|
          Length = 219

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 251 YCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKAS-SAATLQ 421
           +  R  S     P  TPA  P   PS   F      L  ETLP + Q  +S  A TLQ
Sbjct: 73  FIQRMFSEGSHKPVVTPALTPAQMPSPTSFSDSIKQLAAETLPKYMQQLSSLDAETLQ 130

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>ARLY_THET2 (Q72GZ4) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 262 DPFHSILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGHPAGA 426
           DP + +L  Y H   + P+  LLAH+     E+  RD   LE  +  L   P GA
Sbjct: 149 DPLY-VLPGYTHLQRAQPV--LLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGA 200

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>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)|
          Length = 768

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
 Frame = +2

Query: 350 CSSLRFETLP----LWRQSKASSAATLQAPTAP-----------ILRKPSTVRLSSGLP 481
           CSSL    L     L RQS AS  +   +P  P           ++ KPSTV+LSSG+P
Sbjct: 352 CSSLPSGRLQVDVTLRRQSNASDDSLSLSPGTPPSLLNNSTHRQMMSKPSTVKLSSGIP 410

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>YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5|
          Length = 1216

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 32/112 (28%), Positives = 45/112 (40%)
 Frame = +2

Query: 254  CPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTA 433
            C R+ +T     T  P+T  + A +     S   +   E +P    SK    +T Q PT+
Sbjct: 814  CARSHTT-----TVEPSTPLETASTSQSTPSATLTSTTENIP--STSKIPETSTTQRPTS 866

Query: 434  PILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPISRL 589
            PIL   +T   SS        ST   P  S    + P   P   +S PI +L
Sbjct: 867  PILTSGATSTSSS------TESTTTSPTTSTTTTLPPTTTPYN-LSAPIPKL 911

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 28/111 (25%), Positives = 41/111 (36%)
 Frame = +2

Query: 251  YCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPT 430
            Y P + S   S P YTPA +P+Y+P+                      K S  +   +PT
Sbjct: 1839 YTPTSPSYSPSSPEYTPA-SPKYSPT--------------------SPKYSPTSPKYSPT 1877

Query: 431  APILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPIS 583
            +P    P+T + S   P     S +  P +       P   P+ P   P S
Sbjct: 1878 SPTY-SPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTS 1927

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>CARB_PSEPK (Q88DU6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1073

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 31/122 (25%), Positives = 44/122 (36%)
 Frame = +1

Query: 235 RVFPVILSADPFHSILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGH 414
           R   ++   D     L   +  SN +P+  LL HFL C +E+ +                
Sbjct: 722 RAMEIVYELDELKRYLREAVQVSNDSPV--LLDHFLNCAIEMDV---------------- 763

Query: 415 PAGADGADLEEAVDGAVEQRVAEVDGDVHLXXXXXXXXXXHPSGSGTFSAGLPPYLSSST 594
            A  DG D+   V GA+ Q + +    VH               SG  +  LPPY  S  
Sbjct: 764 DAVCDGTDV---VIGAIMQHIEQ--AGVH---------------SGDSACSLPPYSLSKE 803

Query: 595 RQ 600
            Q
Sbjct: 804 VQ 805

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>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)|
          Length = 544

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
 Frame = +2

Query: 242 FQSYCPRTLSTPYSMPTYTPATAPQYA--PSLHIFFSVCSSLRFETLPLWRQSKASSAAT 415
           F    P    TP S PT TP + P     P++             T+P    S  S   +
Sbjct: 113 FSKQTPTPTPTPTSKPTSTPTSTPSQTIPPTVS-----------PTVPPQTTSPTSKPTS 161

Query: 416 LQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAAS--PARGILPVPEPSRPVS 571
              PT+      +    S  +P     +T   P  S  P +  +P P P+RP S
Sbjct: 162 TPTPTSTPTPTSTPTPTSQTIPPP---TTTPKPTKSSKPTKTPVPTPTPTRPSS 212

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>LIVH_SALTY (P0A2J1) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 447 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 271
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>LIVH_SALTI (P0A2J2) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 447 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 271
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>LIVH_ECOLI (P0AEX7) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 447 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 271
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>LIVH_ECO57 (P0AEX8) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 447 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 271
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>KDSA_ERWCT (Q6D547) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 284

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 157 GVLGDLVPFVVARGRDQGAACD-ASNQRVFPVILSADPFHSILHAYIHSSNSTPICALLA 333
           G +G++V   +  G DQ   CD  SN     +++    F+ + HA    SN +P+   + 
Sbjct: 146 GQMGNIVDKFIEGGNDQIILCDRGSNFGYDNLVVDMLGFNVMKHA----SNGSPVIFDVT 201

Query: 334 HFLQC 348
           H LQC
Sbjct: 202 HALQC 206

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>CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ras 1|
           (Connector enhancer of KSR1) (hCNK1) (Connector enhancer
           of KSR-like) (CNK homolog protein 1)
          Length = 720

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 257 PRTLSTPYSM-PTYTPATAPQYAPSLHIF-FSVCSSLRFETLPLWRQSKASSAATLQAPT 430
           P+ L +P+   P+ + A     APS  +F F + S+      P W  S +     L  P 
Sbjct: 295 PQVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPP 354

Query: 431 APILRKPSTVRLSSGLPRS 487
            P    P+ V  + GLP S
Sbjct: 355 EPPAILPAGVAGTPGLPES 373

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>CARB_PSESM (Q87WP4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1073

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 29/115 (25%), Positives = 42/115 (36%)
 Frame = +1

Query: 235 RVFPVILSADPFHSILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGH 414
           R   ++   D     L   +  SN +P+  LL HFL C +E+ +                
Sbjct: 722 RAMEIVYQEDELKRYLREAVQVSNDSPV--LLDHFLNCAIEMDV---------------- 763

Query: 415 PAGADGADLEEAVDGAVEQRVAEVDGDVHLXXXXXXXXXXHPSGSGTFSAGLPPY 579
            A  DG D+   V GA+ Q + +    VH               SG  +  LPPY
Sbjct: 764 DAVCDGTDV---VIGAIMQHIEQ--AGVH---------------SGDSACSLPPY 798

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>K0319_MOUSE (Q5SZV5) Protein KIAA0319 precursor|
          Length = 1081

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
 Frame = +2

Query: 368 ETLPLWRQSKASSAATLQAPT-----APILRKPSTVRLSSGL---PRSMAMSTLLDPAAS 523
           ETL L  Q   SS   +  P+     A +   P+T   +S     PRS   ST   P ++
Sbjct: 262 ETLQLQEQPSNSSGKEVPMPSHNPSPASLESSPATTEKNSNFTVTPRSRKHSTPTFPTST 321

Query: 524 PARGILPVPEPSRPVS 571
              G+ P P P  P +
Sbjct: 322 VLTGLTPPPWPLSPTA 337

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>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 19/169 (11%)
 Frame = +2

Query: 125 STAVAMAPPVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYT-- 298
           +TA A   PV A+          A    +  A P ++ F     P   S P   PT +  
Sbjct: 454 ATAPATPAPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMK--PPETSAPVVTPTASTA 511

Query: 299 ---PATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLS 469
              PATAP  AP+     +V ++    T      + A++ AT  A  A     P  + + 
Sbjct: 512 PPVPATAPSPAPT-----AVAATAATTTAA----AAATTTATTSAAAATTAAAPPALDIF 562

Query: 470 SGL----------PRSMAMSTL----LDPAASPARGILPVPEPSRPVSL 574
             L          P+  A  ++     D  +SP RG  PVPE S    L
Sbjct: 563 GDLFDSAPEVAAAPKPDAAPSIDLFGTDAFSSPPRGASPVPESSLTADL 611

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>SOCS6_MOUSE (Q9JLY0) Suppressor of cytokine signaling 6 (SOCS-6) (Suppressor of|
           cytokine signaling 4) (SOCS-4) (Cytokine-inducible SH2
           protein 4) (CIS-4)
          Length = 533

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 432 AVGACRVAAEDAFDCLQS-GSVSKRKLEQTLKKMCKEGAYWGAV 304
           A G  RV     +D +QS G +    L + LKK+ K+G YWG +
Sbjct: 349 APGVARV-----YDSVQSSGPMVVTSLTEELKKLAKQGWYWGPI 387

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>SOCS6_HUMAN (O14544) Suppressor of cytokine signaling 6 (SOCS-6) (Suppressor of|
           cytokine signaling 4) (SOCS-4) (Cytokine-inducible SH2
           protein 4) (CIS-4)
          Length = 535

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 432 AVGACRVAAEDAFDCLQS-GSVSKRKLEQTLKKMCKEGAYWGAV 304
           A G  RV     +D +QS G +    L + LKK+ K+G YWG +
Sbjct: 351 APGVARV-----YDSVQSSGPMVVTSLTEELKKLAKQGWYWGPI 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,690,551
Number of Sequences: 219361
Number of extensions: 1435748
Number of successful extensions: 6587
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 6137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6524
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result