ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19m14 |
|---|---|
| Clone Library Name | barley_pub |
>OPT3_ARATH (O23482) Probable oligopeptide transporter 3 (AtOPT3)| Length = 737 Score = 228 bits (581), Expect = 8e-60 Identities = 100/116 (86%), Positives = 107/116 (92%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 + FP KKWI L+N+PVISYGFAGMPPATPTNIASWLVTGT+FN+FVF Y K WWQKYNYV Sbjct: 622 KIFPNKKWIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYV 681 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVDHCPLATCPTAPGIVVKGCPVF 191 LSAALDAGTAFMGVL+FFALQNA HDLKWWGTEVDHCPLA+CPTAPGI KGCPVF Sbjct: 682 LSAALDAGTAFMGVLLFFALQNAGHDLKWWGTEVDHCPLASCPTAPGIKAKGCPVF 737
>OPT4_ARATH (Q9FME8) Oligopeptide transporter 4 (AtOPT4)| Length = 729 Score = 162 bits (409), Expect = 7e-40 Identities = 69/115 (60%), Positives = 86/115 (74%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 +AFP++ WI LVN+PV+ A MPPAT N SW++ GT+FN FVFRYRK WWQ+YNYV Sbjct: 614 KAFPKRSWIPLVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRKSWWQRYNYV 673 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVDHCPLATCPTAPGIVVKGCPV 194 LSAA+DAG AFM VL++F++ L WWGT +HC LA CPTA G++V GCPV Sbjct: 674 LSAAMDAGVAFMAVLLYFSVGMEEKSLDWWGTRGEHCDLAKCPTARGVIVDGCPV 728
>OPT5_ARATH (Q9SUA4) Oligopeptide transporter 5 (AtOPT5)| Length = 753 Score = 151 bits (381), Expect = 1e-36 Identities = 71/118 (60%), Positives = 84/118 (71%), Gaps = 2/118 (1%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 R FPEKKWI +++P+I G MP A + SW G VFN+++FR KGWW ++NY+ Sbjct: 636 RKFPEKKWIHQIHIPLIFSGANVMPMAKAVHYWSWFAVGIVFNYYIFRRYKGWWARHNYI 695 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDL-KWWGTE-VDHCPLATCPTAPGIVVKGCPVF 191 LSAALDAGTA MGVLI+FALQN + L WWG E DHCPLA CPT GIV KGCPVF Sbjct: 696 LSAALDAGTAVMGVLIYFALQNNNISLPDWWGNENTDHCPLANCPTEKGIVAKGCPVF 753
>OPT8_ARATH (Q9FJD1) Probable oligopeptide transporter 8 (AtOPT8)| Length = 733 Score = 150 bits (378), Expect = 3e-36 Identities = 65/116 (56%), Positives = 81/116 (69%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 R FP KKWI+ +++PV+ A MPPA+ N SWLV VF FVF+YR+ WWQ+YNYV Sbjct: 618 RLFPNKKWISDIHIPVLIGATAIMPPASAVNFTSWLVMAFVFGHFVFKYRREWWQRYNYV 677 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVDHCPLATCPTAPGIVVKGCPVF 191 LS +DAGT FM VL+F ALQ + + WWG + CP+A CPTA G+VV GCPVF Sbjct: 678 LSGGMDAGTGFMSVLLFLALQRSEIAIDWWGNSGEGCPVAKCPTAKGVVVHGCPVF 733
>OPT7_ARATH (O82485) Oligopeptide transporter 7 (AtOPT7)| Length = 766 Score = 150 bits (378), Expect = 3e-36 Identities = 64/116 (55%), Positives = 84/116 (72%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 R FP ++WI L+N+PV+ + MPPAT N +W++ G + F VFRYR WQ+YNYV Sbjct: 650 RMFPRQEWIKLINMPVLISATSSMPPATAVNYTTWVLAGFLSGFVVFRYRPNLWQRYNYV 709 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVDHCPLATCPTAPGIVVKGCPVF 191 LS ALDAG AFMGVL++ L + L WWG E+D CPLA+CPTAPGI+V+GCP++ Sbjct: 710 LSGALDAGLAFMGVLLYMCLGLENVSLDWWGNELDGCPLASCPTAPGIIVEGCPLY 765
>OPT2_ARATH (O04514) Probable oligopeptide transporter 2 (AtOPT2)| Length = 722 Score = 147 bits (372), Expect = 1e-35 Identities = 65/117 (55%), Positives = 85/117 (72%), Gaps = 1/117 (0%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 +AFP K WI+ +N+PV+ A MPPAT N W++ G +FN+FVF+Y K WWQ+YNYV Sbjct: 580 KAFPTKTWISQINLPVLLGATAAMPPATSVNFNCWIIVGVIFNYFVFKYCKKWWQRYNYV 639 Query: 358 LSAALDAGTAFMGVLIFFAL-QNAHHDLKWWGTEVDHCPLATCPTAPGIVVKGCPVF 191 LSAALDAG AFMGVL++F+L N WWG + ++CPLA+CPTAPG++V VF Sbjct: 640 LSAALDAGLAFMGVLLYFSLTMNGISINHWWGAKGENCPLASCPTAPGVLVDDFTVF 696
>OPT1_ARATH (Q9FG72) Oligopeptide transporter 1 (AtOPT1)| Length = 755 Score = 145 bits (365), Expect = 9e-35 Identities = 67/118 (56%), Positives = 83/118 (70%), Gaps = 2/118 (1%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 + FPEKKW+ ++VP+I + MP A + SW + G VFN+++FR K WW ++NY+ Sbjct: 638 KKFPEKKWLKQIHVPLIFSAVSAMPQAKAVHYWSWAIVGVVFNYYIFRRFKTWWARHNYI 697 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDL-KWWGTE-VDHCPLATCPTAPGIVVKGCPVF 191 LSAALDAGTA MGVLIFFA QN L WWG E DHCPLA CP A G+VV+GCPVF Sbjct: 698 LSAALDAGTAIMGVLIFFAFQNNDISLPDWWGLENSDHCPLAHCPLAKGVVVEGCPVF 755
>OPT6_ARATH (Q9T095) Oligopeptide transporter 6 (AtOPT6)| Length = 736 Score = 145 bits (365), Expect = 9e-35 Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 2/118 (1%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 + FP + WIA +++PV+ A MPPAT N SWL+ +F F+F+YR+ WW KYNYV Sbjct: 619 KMFPAQTWIAKIHIPVLVGATAMMPPATAVNFTSWLIVAFIFGHFIFKYRRVWWTKYNYV 678 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDLKWWGT--EVDHCPLATCPTAPGIVVKGCPVF 191 LS LDAG+AFM +L+F AL +++WWG + D CPLA+CPTA G+VVKGCPVF Sbjct: 679 LSGGLDAGSAFMTILLFLALGRKGIEVQWWGNSGDRDTCPLASCPTAKGVVVKGCPVF 736
>OPT9_ARATH (Q9FJD2) Probable oligopeptide transporter 9 (AtOPT9)| Length = 741 Score = 129 bits (324), Expect = 5e-30 Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 2/117 (1%) Frame = -3 Query: 538 RAFPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYV 359 +AFP KWI+ ++ PVI + MPPA N SW + VF F+++Y++ WW+KYNYV Sbjct: 624 KAFPAHKWISKIHFPVILGATSMMPPAMAVNFTSWCIVAFVFGHFLYKYKRQWWKKYNYV 683 Query: 358 LSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVD--HCPLATCPTAPGIVVKGCPV 194 LS LDAGTAFM +LIF ++ L WWG D +C LA+CPTA G+++ GCPV Sbjct: 684 LSGGLDAGTAFMTILIFLSVGRKGIGLLWWGNADDSTNCSLASCPTAKGVIMHGCPV 740
>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4| Length = 785 Score = 80.9 bits (198), Expect = 2e-15 Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Frame = -3 Query: 523 KKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYVLSAAL 344 +KW +N P+I G +PPATP N +W G FN+++ + WWQKYN+ LSAAL Sbjct: 667 QKWWGQLNGPLIFGGTGYIPPATPVNYLAWSGIGLFFNYYLKKIFADWWQKYNFTLSAAL 726 Query: 343 DAGTAFMGVLIFFALQNAHHDL-KWWGTE 260 D GT +++FF LQ + WWG + Sbjct: 727 DTGTQLSVIILFFCLQLPMVNFPDWWGND 755
>OPT1_YEAST (P40897) Oligopeptide transporter 1| Length = 799 Score = 65.5 bits (158), Expect = 9e-11 Identities = 32/92 (34%), Positives = 48/92 (52%) Frame = -3 Query: 532 FPEKKWIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRYRKGWWQKYNYVLS 353 FP+ K+ ++ PV G +PP+TP N + + N R+R W+ KYN+V+ Sbjct: 682 FPKFKFAKHIHTPVFFTGPGNIPPSTPYNYSLFFAMSFCLNLIRKRWR-AWFNKYNFVMG 740 Query: 352 AALDAGTAFMGVLIFFALQNAHHDLKWWGTEV 257 A ++AG A V+IF +Q L WWG V Sbjct: 741 AGVEAGVAISVVIIFLCVQYPGGKLSWWGNNV 772
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 32.3 bits (72), Expect = 0.87 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -2 Query: 344 RCRHRLHGGAHLLRAPERAPRPQVVGHRGRPLPARHLPHCARHRRQGLPG----LLSTEL 177 R RHR ++ +P R P P+ R P R +P RHRR PG S L Sbjct: 297 RRRHRSRSRSY---SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASL 353 Query: 176 AGASDSA 156 +G+S S+ Sbjct: 354 SGSSSSS 360
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 31.2 bits (69), Expect = 1.9 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%) Frame = -2 Query: 335 HRLHG-GAHLLRAPERAPRPQVVG-----HRGRPLPARHLPHCARHRRQGL 201 HR HG H R+P AP PQ H P P +H+ H H+ Q L Sbjct: 385 HRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQTL 435
>IRK10_RAT (P49655) ATP-sensitive inward rectifier potassium channel 10| (Potassium channel, inwardly rectifying subfamily J member 10) (ATP-sensitive inward rectifier potassium channel KAB-2) (Kir4.1) (BIR10) (Brain-specific inwardly rectifying K(+) chann Length = 379 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = -3 Query: 400 FRYRKGWWQ-------KYNYVLSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVDHCP 245 F Y K W +Y +L +A AGT F+ ++++ + AH DL G +H P Sbjct: 49 FLYLKDLWTTFIDMQWRYKLLLFSATFAGTWFLFGVVWYLVAVAHGDLLELGPPANHTP 107
>IRK10_MOUSE (Q9JM63) ATP-sensitive inward rectifier potassium channel 10| (Potassium channel, inwardly rectifying subfamily J member 10) (Inward rectifier K(+) channel Kir4.1) Length = 379 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = -3 Query: 400 FRYRKGWWQ-------KYNYVLSAALDAGTAFMGVLIFFALQNAHHDLKWWGTEVDHCP 245 F Y K W +Y +L +A AGT F+ ++++ + AH DL G +H P Sbjct: 49 FLYLKDLWTTFIDMQWRYKLLLFSATFAGTWFLFGVVWYLVAVAHGDLLELGPPANHTP 107
>YOPH_YEREN (P15273) Tyrosine-protein phosphatase yopH (EC 3.1.3.48) (Virulence| protein) Length = 468 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Frame = -2 Query: 383 VVAEVQLRAVGGARCRHRLHGGAHLLRAPERAPRPQVVGH---RGRPLPARHLPHCARHR 213 V+ E LR GAR H + +L AP R + H R PLP R PH + H Sbjct: 115 VLLEAALRQESGARGHVSSHSHS-VLHAPGTPVREGLRSHLDPRTPPLPPRERPHTSGHH 173 Query: 212 RQG 204 G Sbjct: 174 GAG 176
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -2 Query: 344 RCRHRLHGGAHLLRAPERAPRPQVVGHRGRPLPARHLPHCARHRRQGLP----GLLSTEL 177 R RHR ++ +P R P P+ R P R +P RHRR P S L Sbjct: 299 RRRHRSRSRSY---SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASL 355 Query: 176 AGASDSA 156 +G+S S+ Sbjct: 356 SGSSSSS 362
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -2 Query: 344 RCRHRLHGGAHLLRAPERAPRPQVVGHRGRPLPARHLPHCARHRRQGLP----GLLSTEL 177 R RHR ++ +P R P P+ R P R +P RHRR P S L Sbjct: 299 RRRHRSRSRSY---SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASL 355 Query: 176 AGASDSA 156 +G+S S+ Sbjct: 356 SGSSSSS 362
>PSAA_PROMM (Q7V510) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| Length = 776 Score = 29.3 bits (64), Expect = 7.4 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = +3 Query: 213 TMPGAVGQVASGQWSTSVPHHLRSWCAF 296 T G V V WST V HH +W F Sbjct: 292 TNNGGVNPVTGALWSTDVAHHHLAWAVF 319
>YOPH_YERPS (P08538) Tyrosine-protein phosphatase yopH (EC 3.1.3.48) (Virulence| protein) Length = 468 Score = 28.9 bits (63), Expect = 9.6 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Frame = -2 Query: 383 VVAEVQLRAVGGAR--CRHRLHGGAHLLRAPERAPRPQVVGHRGRPLPARHLPHCARHRR 210 V+ E LR GAR H H P R + R PLP R PH + H Sbjct: 115 VLLEAALRQESGARGHVSSHSHSALHAPGTPVREGLRSHLDPRTPPLPPRERPHTSGHHG 174 Query: 209 QG 204 G Sbjct: 175 AG 176
>CYB_HIMGE (Q9XKK0) Cytochrome b| Length = 380 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -3 Query: 517 WIALVNVPVISYGFAGMPPATPTNIASWLVTGTVFNFFVFRY-RKGWWQ 374 W+ + N ++++ G P P I + + T F+FF+ + GWW+ Sbjct: 327 WLLVANTIILTW-IGGQPVEQPFIIIGQIASITYFSFFLILFPLAGWWE 374
>Y4160_CLOAB (P33747) Hypothetical protein CAP0160 precursor| Length = 967 Score = 28.9 bits (63), Expect = 9.6 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = -3 Query: 346 LDAGTAFMGVLIFFALQNAHHDLKWWGT--EVDHCPLATCPTAPGIVVKGCPVF*ALSSP 173 L+A T G+LIF A HH +W G+ + H P PT +VK P+ L++ Sbjct: 326 LEAWTKGGGILIFNAADEGHHSGQWQGSFLGLTHTPSDFQPTI--TIVKQDPI---LTAN 380 Query: 172 EHRTVPTMYVAGS 134 T+ Y A S Sbjct: 381 LKTTITGNYAAHS 393
>AMPA_PROMM (Q7V5X8) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 490 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +2 Query: 98 NSWLPLPI-QTMITASHIHGGHCPMLRRAQCSE 193 NS P + QT I +H HG C +L R+ C+E Sbjct: 185 NSLTPAALAQTAIQLAHEHGLECSVLERSDCAE 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,337,266 Number of Sequences: 219361 Number of extensions: 1594500 Number of successful extensions: 5389 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5377 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
