ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19l04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B03, full insert sequence Length = 994 Score = 113 bits (57), Expect = 7e-22 Identities = 111/129 (86%) Strand = Plus / Minus Query: 340 cgctccttgttgaccatggcctcgtgctctctggcctcgtccgccaagatctgccgctgc 399 |||||||| ||| ||||||| || |||| || |||||||||| || ||||||| || | Sbjct: 557 cgctccttcttggccatggcgtcccgctccctcgcctcgtccgtcatgatctgctgccac 498 Query: 400 cggcactcctcgctgcagaacccctggtcgcccctgtacatgtacacgtctttgtcggga 459 | |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 497 ctgcactcctcgctgcagaacccctgttcacccctgtacatgtacacgtccttgtcgggg 438 Query: 460 ctgagctcc 468 | ||||||| Sbjct: 437 ccgagctcc 429
>dbj|AK072558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131I21, full insert sequence Length = 916 Score = 113 bits (57), Expect = 7e-22 Identities = 111/129 (86%) Strand = Plus / Minus Query: 340 cgctccttgttgaccatggcctcgtgctctctggcctcgtccgccaagatctgccgctgc 399 |||||||| ||| ||||||| || |||| || |||||||||| || ||||||| || | Sbjct: 570 cgctccttcttggccatggcgtcccgctccctcgcctcgtccgtcatgatctgctgccac 511 Query: 400 cggcactcctcgctgcagaacccctggtcgcccctgtacatgtacacgtctttgtcggga 459 | |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 510 ctgcactcctcgctgcagaacccctgttcacccctgtacatgtacacgtccttgtcgggg 451 Query: 460 ctgagctcc 468 | ||||||| Sbjct: 450 ccgagctcc 442
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 340 cgctccttgttgaccatggcctcgtgctctctggcctcgtccgccaagatctgccgctgc 399 |||||||| ||| ||||||| || |||| || |||||||||| || ||||||| || | Sbjct: 15873055 cgctccttcttggccatggcgtcccgctccctcgcctcgtccgtcatgatctgctgccac 15872996 Query: 400 cggcactcctcgctgcagaacccctggtcgcccctg 435 | |||||||||||||||||||||||| || |||||| Sbjct: 15872995 ctgcactcctcgctgcagaacccctgttcacccctg 15872960 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 432 cctgtacatgtacacgtctttgtcgggactgagctcc 468 |||||||||||||||||| |||||||| | ||||||| Sbjct: 15872852 cctgtacatgtacacgtccttgtcggggccgagctcc 15872816
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 340 cgctccttgttgaccatggcctcgtgctctctggcctcgtccgccaagatctgccgctgc 399 |||||||| ||| ||||||| || |||| || |||||||||| || ||||||| || | Sbjct: 36181 cgctccttcttggccatggcgtcccgctccctcgcctcgtccgtcatgatctgctgccac 36122 Query: 400 cggcactcctcgctgcagaacccctggtcgcccctg 435 | |||||||||||||||||||||||| || |||||| Sbjct: 36121 ctgcactcctcgctgcagaacccctgttcacccctg 36086 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 432 cctgtacatgtacacgtctttgtcgggactgagctcc 468 |||||||||||||||||| |||||||| | ||||||| Sbjct: 35978 cctgtacatgtacacgtccttgtcggggccgagctcc 35942
>gb|AY596534.1| Saccharum officinarum clone SCJLLR1104A08, complete sequence Length = 1065 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Minus Query: 385 aagatctgccgctgccggcactcctcgctgcagaacccctggtcgcccctgtacatgta 443 ||||||||||| |||||||||||||||||||||| || ||||||| ||||||||||| Sbjct: 428 aagatctgccggcaccggcactcctcgctgcagaacgcccggtcgcctctgtacatgta 370
>gb|AY107714.1| Zea mays PCO121192 mRNA sequence Length = 742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 385 aagatctgccgctgccggcactcctcgctgcagaacccctggtcgcccctgtacatgta 443 ||||||||||| |||||||||||||||||||||| || ||||||| |||||||||| Sbjct: 371 aagatctgccggcaccggcactcctcgctgcagaacgcccggtcgcctttgtacatgta 313
>ref|XM_473677.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 339 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 387 gatctgccgctgccggcactcctcgctgcagaacccctggtcgcccctgtacatg 441 ||||||| |||||| ||||||||||||||||||| | ||| |||||||||||| Sbjct: 159 gatctgctgctgcctgcactcctcgctgcagaacggcgtgtctcccctgtacatg 105
>dbj|AK070920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072B01, full insert sequence Length = 768 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 387 gatctgccgctgccggcactcctcgctgcagaacccctggtcgcccctgtacatg 441 ||||||| |||||| ||||||||||||||||||| | ||| |||||||||||| Sbjct: 96 gatctgctgctgcctgcactcctcgctgcagaacggcgtgtctcccctgtacatg 42
>dbj|AK064763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-H07, full insert sequence Length = 872 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 387 gatctgccgctgccggcactcctcgctgcagaacccctggtcgcccctgtacatg 441 ||||||| |||||| ||||||||||||||||||| | ||| |||||||||||| Sbjct: 317 gatctgctgctgcctgcactcctcgctgcagaacggcgtgtctcccctgtacatg 263
>ref|XM_467201.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 387 gatctgccgctgccggcactcctcgctgcagaac 420 |||||| ||||||| ||||||||||||||||||| Sbjct: 255 gatctggcgctgcctgcactcctcgctgcagaac 222
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 387 gatctgccgctgccggcactcctcgctgcagaac 420 ||||||| |||||| ||||||||||||||||||| Sbjct: 82648 gatctgctgctgcctgcactcctcgctgcagaac 82681 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 387 gatctgccgctgccggcactcctcgctgcagaa 419 ||||||| ||||| |||||||||||||||||| Sbjct: 86575 gatctgctcctgcctgcactcctcgctgcagaa 86607 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 100774 cggcactcctcgctgcagaa 100793 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 97219 cggcactcctcgctgcagaa 97238
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 387 gatctgccgctgccggcactcctcgctgcagaac 420 ||||||| |||||| ||||||||||||||||||| Sbjct: 29579959 gatctgctgctgcctgcactcctcgctgcagaac 29579992 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 387 gatctgccgctgccggcactcctcgctgcagaa 419 ||||||| ||||| |||||||||||||||||| Sbjct: 29583886 gatctgctcctgcctgcactcctcgctgcagaa 29583918 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 29598085 cggcactcctcgctgcagaa 29598104 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 29594530 cggcactcctcgctgcagaa 29594549
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 399 ccggcactcctcgctgcagaacccctggtc 428 |||||||||||||||||||||||| ||||| Sbjct: 22027614 ccggcactcctcgctgcagaacccttggtc 22027585
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 387 gatctgccgctgccggcactcctcgctgcagaac 420 |||||| ||||||| ||||||||||||||||||| Sbjct: 28162804 gatctggcgctgcctgcactcctcgctgcagaac 28162837 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 ccggcactcctcgctgcagaa 419 ||||||||||||||||||||| Sbjct: 28172488 ccggcactcctcgctgcagaa 28172508 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 gcgcgccggcggcgagctgaccat 539 ||||||||||||||||||| |||| Sbjct: 25153678 gcgcgccggcggcgagctgcccat 25153655
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_H01 Length = 128124 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 399 ccggcactcctcgctgcagaacccctggtc 428 |||||||||||||||||||||||| ||||| Sbjct: 113363 ccggcactcctcgctgcagaacccttggtc 113334
>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1717_A09 Length = 203132 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 387 gatctgccgctgccggcactcctcgctgcagaac 420 |||||| ||||||| ||||||||||||||||||| Sbjct: 152451 gatctggcgctgcctgcactcctcgctgcagaac 152484 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 ccggcactcctcgctgcagaa 419 ||||||||||||||||||||| Sbjct: 162135 ccggcactcctcgctgcagaa 162155
>gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165440 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 570 gtggtgctggacgaggatctgcagcc 595 ||||||||||| |||||||||||||| Sbjct: 152903 gtggtgctggatgaggatctgcagcc 152928
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 ccgctgccggcactcctcgctg 414 |||||||||||||||||||||| Sbjct: 3692150 ccgctgccggcactcctcgctg 3692171
>ref|XM_467202.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 ccggcactcctcgctgcagaa 419 ||||||||||||||||||||| Sbjct: 266 ccggcactcctcgctgcagaa 246
>ref|XM_473678.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 384 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 gatctgccgctgccggcactcctcgctgcagaa 419 ||||||| ||||| |||||||||||||||||| Sbjct: 273 gatctgctcctgcctgcactcctcgctgcagaa 241
>ref|XM_604054.2| PREDICTED: Bos taurus similar to Helix-loop-helix protein 2 (HEN2) (Nescient helix loop helix 2) (NSCL-2), transcript variant 1 (LOC525699), mRNA Length = 481 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 ggcggtggcgcgccggcggcg 529 ||||||||||||||||||||| Sbjct: 259 ggcggtggcgcgccggcggcg 239
>ref|XM_867845.1| PREDICTED: Bos taurus similar to Helix-loop-helix protein 2 (HEN2) (Nescient helix loop helix 2) (NSCL-2), transcript variant 2 (LOC525699), mRNA Length = 1507 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 ggcggtggcgcgccggcggcg 529 ||||||||||||||||||||| Sbjct: 1274 ggcggtggcgcgccggcggcg 1254
>ref|XM_540253.2| PREDICTED: Canis familiaris similar to nescient helix loop helix 2 (LOC483135), mRNA Length = 1014 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 ggcggtggcgcgccggcggcg 529 ||||||||||||||||||||| Sbjct: 834 ggcggtggcgcgccggcggcg 814
>ref|XM_546560.2| PREDICTED: Canis familiaris similar to Myb-binding protein 1A, transcript variant 1 (LOC489442), mRNA Length = 4521 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 570 gtggtgctggacgaggatctgcagc 594 |||||||||| |||||||||||||| Sbjct: 303 gtggtgctgggcgaggatctgcagc 279
>ref|XM_850692.1| PREDICTED: Canis familiaris similar to Myb-binding protein 1A, transcript variant 4 (LOC489442), mRNA Length = 4539 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 570 gtggtgctggacgaggatctgcagc 594 |||||||||| |||||||||||||| Sbjct: 303 gtggtgctgggcgaggatctgcagc 279
>ref|XM_850658.1| PREDICTED: Canis familiaris similar to Myb-binding protein 1A, transcript variant 3 (LOC489442), mRNA Length = 4206 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 570 gtggtgctggacgaggatctgcagc 594 |||||||||| |||||||||||||| Sbjct: 303 gtggtgctgggcgaggatctgcagc 279
>ref|XM_843175.1| PREDICTED: Canis familiaris similar to Myb-binding protein 1A, transcript variant 2 (LOC489442), mRNA Length = 3798 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 570 gtggtgctggacgaggatctgcagc 594 |||||||||| |||||||||||||| Sbjct: 303 gtggtgctgggcgaggatctgcagc 279
>gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, complete sequence Length = 133668 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 ccatctcactctcaccctcac 108 ||||||||||||||||||||| Sbjct: 14236 ccatctcactctcaccctcac 14256
>gb|AC008618.7| Homo sapiens chromosome 5 clone CTB-146E17, complete sequence Length = 139029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 ccatctcactctcaccctcac 108 ||||||||||||||||||||| Sbjct: 110999 ccatctcactctcaccctcac 111019
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 cggacggcggtggcgcgccggcggc 528 ||||||||||||||||| ||||||| Sbjct: 235728 cggacggcggtggcgcggcggcggc 235752 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 cggacggcggtggcgcgccggcgg 527 ||||||||||||||||| |||||| Sbjct: 235707 cggacggcggtggcgcggcggcgg 235730
>gb|AC008565.6|AC008565 Homo sapiens chromosome 5 clone CTC-538F12, complete sequence Length = 167086 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ccatctcactctcaccctcac 108 ||||||||||||||||||||| Sbjct: 12251 ccatctcactctcaccctcac 12231
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 508 cggcggtggcgcgccggcggcgagc 532 |||||| |||||||||||||||||| Sbjct: 1654307 cggcggcggcgcgccggcggcgagc 1654331
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 cggacggcggtggcgcgccggcggc 528 ||||||||||||||||| ||||||| Sbjct: 77398 cggacggcggtggcgcggcggcggc 77422 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 cggacggcggtggcgcgccggcgg 527 ||||||||||||||||| |||||| Sbjct: 77377 cggacggcggtggcgcggcggcgg 77400
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 gcgccggcggcgagctgacca 538 ||||||||||||||||||||| Sbjct: 2416474 gcgccggcggcgagctgacca 2416454
>dbj|AK060089.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H12, full insert sequence Length = 1044 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 387 gatctgccgctgccggcactcctcgctgcagaa 419 ||||||| ||||| |||||||||||||||||| Sbjct: 508 gatctgctcctgcctgcactcctcgctgcagaa 476
>dbj|AK059947.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H10, full insert sequence Length = 972 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 ccggcactcctcgctgcagaa 419 ||||||||||||||||||||| Sbjct: 266 ccggcactcctcgctgcagaa 246
>ref|XM_466861.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2046 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 gcgcgccggcggcgagctgaccat 539 ||||||||||||||||||| |||| Sbjct: 1509 gcgcgccggcggcgagctgcccat 1486
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cgtggtggtgacgacggtgc 327 |||||||||||||||||||| Sbjct: 29119 cgtggtggtgacgacggtgc 29138
>ref|XM_473680.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 315 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 164 cggcactcctcgctgcagaa 145
>ref|XM_473679.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 294 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 164 cggcactcctcgctgcagaa 145
>gb|AY682094.1| Homo sapiens fibroblast growth factor 9 (glia-activating factor) (FGF9) gene, complete cds Length = 33221 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gctacagatccgaacttacc 35 |||||||||||||||||||| Sbjct: 5984 gctacagatccgaacttacc 6003
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gtggcgcgccggcggcgagc 532 |||||||||||||||||||| Sbjct: 1702587 gtggcgcgccggcggcgagc 1702568
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 gcgccggcggcgagctgacc 537 |||||||||||||||||||| Sbjct: 2010147 gcgccggcggcgagctgacc 2010166
>emb|AL139378.15| Human DNA sequence from clone RP11-271B5 on chromosome 13 Contains the FGF9 gene for fibroblast growth factor 9 (glia-activating factor (GAF, HBFG-9)), a ribosomal protein S7 (40S ribosomal protein S7) (RPS7) pseudogene and two CpG islands, complete sequence Length = 166703 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gctacagatccgaacttacc 35 |||||||||||||||||||| Sbjct: 59099 gctacagatccgaacttacc 59118
>gb|AC129623.4| Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BAC Library D) complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tatccatattgttcttcttaattt 149 ||||||||||||||||||| |||| Sbjct: 18972 tatccatattgttcttcttcattt 18949
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggcggtgccgcgcgtggcc 307 |||||||||||||||||||| Sbjct: 156237 cggcggtgccgcgcgtggcc 156218
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggcggtgccgcgcgtggcc 307 |||||||||||||||||||| Sbjct: 143511 cggcggtgccgcgcgtggcc 143492
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gtggcgcgccggcggcgagc 532 |||||||||||||||||||| Sbjct: 3037489 gtggcgcgccggcggcgagc 3037470
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 cccggatcgccaccggcggtgccg 298 |||| ||||||||||||||||||| Sbjct: 160097 cccgcatcgccaccggcggtgccg 160074
>gb|AC091321.8| Homo sapiens, clone RP11-261I12, complete sequence Length = 45415 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tatccatattgttcttcttaattt 149 ||||||||||||||||||| |||| Sbjct: 36439 tatccatattgttcttcttcattt 36416
>gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, complete sequence Length = 182051 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggcggtgccgcgcgtggccc 308 |||||||||||||||||||| Sbjct: 139025 ggcggtgccgcgcgtggccc 139006
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gtggcgcgccggcggcgagc 532 |||||||||||||||||||| Sbjct: 2186299 gtggcgcgccggcggcgagc 2186280
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 cggtggcgcgccggcggcgagctg 534 ||||| |||||||||||||||||| Sbjct: 6202806 cggtgccgcgccggcggcgagctg 6202783
>gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, complete sequence Length = 146399 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 tgcatgcatcataatcaagc 243 |||||||||||||||||||| Sbjct: 16774 tgcatgcatcataatcaagc 16755
>gb|AC009156.10| Homo sapiens chromosome 16 clone RP11-5G20, complete sequence Length = 184884 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 tgcatgcatcataatcaagc 243 |||||||||||||||||||| Sbjct: 165530 tgcatgcatcataatcaagc 165511
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 517 cgcgccggcggcgagctgaccatc 540 ||||||||||||| |||||||||| Sbjct: 3789930 cgcgccggcggcgcgctgaccatc 3789907
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 cggtggcgcgccggcggcgagctg 534 ||||| |||||||||||||||||| Sbjct: 116625 cggtgccgcgccggcggcgagctg 116602
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 gcgcgccggcggcgagctgaccat 539 ||||||||||||||||||| |||| Sbjct: 54071 gcgcgccggcggcgagctgcccat 54048
>dbj|AK120315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055L24, full insert sequence Length = 636 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 166 cggcactcctcgctgcagaa 147
>dbj|AK063206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D01, full insert sequence Length = 727 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cggcactcctcgctgcagaa 419 |||||||||||||||||||| Sbjct: 252 cggcactcctcgctgcagaa 233
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 gcgcgccggcggcgagctga 535 |||||||||||||||||||| Sbjct: 1323608 gcgcgccggcggcgagctga 1323627
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ccggcggcgagctgaccatc 540 |||||||||||||||||||| Sbjct: 3884918 ccggcggcgagctgaccatc 3884937
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 ggtgctggacgaggatctgc 591 |||||||||||||||||||| Sbjct: 1517708 ggtgctggacgaggatctgc 1517727 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,428,785 Number of Sequences: 3902068 Number of extensions: 4428785 Number of successful extensions: 94650 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92434 Number of HSP's gapped (non-prelim): 2216 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
