ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLD23_MOUSE (Q9D7D7) Claudin-23 30 4.7
2CLIC6_RAT (Q811Q2) Chloride intracellular channel 6 30 4.7
3IL24_MOUSE (Q925S4) Interleukin-24 precursor (Melanoma different... 30 6.2
4ASP_DROME (Q9VC45) Protein abnormal spindle 30 8.0
5SRA25_CAEEL (O17847) Serpentine receptor class alpha-25 (Protein... 30 8.0
6ADRB1_RAT (P18090) Beta-1 adrenergic receptor (Beta-1 adrenocept... 30 8.0
7ADRB1_MOUSE (P34971) Beta-1 adrenergic receptor (Beta-1 adrenoce... 30 8.0

>CLD23_MOUSE (Q9D7D7) Claudin-23|
          Length = 296

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +3

Query: 129 YPL*LPLPGCCSRV--ALELALAIAASGIVPCRR----HPCGLKRGHISHVHVKRQHPVL 290
           Y L L   G C  +     LAL+ A      CRR     P G +R  IS V+V    P L
Sbjct: 158 YSLVLGYLGSCLLLLGGFSLALSFAPWCEERCRRCRKAPPAGPRRSSISTVYVDWPEPAL 217

Query: 291 DVEVLQYSDHLLEHEFPPHKPH 356
              +  YSD   +H  PP   H
Sbjct: 218 TPAIKYYSDG--QHRPPPTAEH 237



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>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6|
          Length = 612

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -1

Query: 468 EGALVPGCDGGPPRCR*DQQAQGIHMAPAHTQLPGHGHEVCEEGTRAPRDDQSTE 304
           EGAL+P   GG  R    QQ QG     +     G   EV E+  R P D +++E
Sbjct: 106 EGALIPQSGGGAKR----QQVQG---TSSGLDAQGEAPEVPEDARREPEDPKASE 153



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>IL24_MOUSE (Q925S4) Interleukin-24 precursor (Melanoma|
           differentiation-associated gene 7 protein) (MDA-7)
           (IL-4-induced secreted protein) (Th2-specific cytokine
           FISP)
          Length = 181

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   LQPQAAFNISAATICIAYHQVYRSFIYTTEHTHHSRHAK 117
           L+PQ   N+S A  C   H + + ++ T    +HS+ AK
Sbjct: 67  LKPQVLRNVSGAESCYLAHSLLKFYLNTVFKNYHSKIAK 105



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>ASP_DROME (Q9VC45) Protein abnormal spindle|
          Length = 1954

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 571  VLIWEKELTSLFMLPRRWKNWLS*RKEYYVTLTVRRSIGTRVRWWSSEM*MRPTSSRY 398
            V++++K+  ++  + RR++  L  RK+  V    R+++    +WW S   MR   + Y
Sbjct: 1461 VVLYQKQREAIIKVQRRYRGNLEMRKQIEVYQKQRQAVIRLQKWWRSIRDMRLCKAGY 1518



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>SRA25_CAEEL (O17847) Serpentine receptor class alpha-25 (Protein sra-25)|
          Length = 335

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 31  AATICIAYHQVYRSFIYTTE 90
           AAT+ I  HQVYRSF+Y ++
Sbjct: 75  AATLEIRIHQVYRSFVYASD 94



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>ADRB1_RAT (P18090) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 466

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 261 RAKCAPSSVHKDADDMELCLKRQSPGPAPGPP 166
           RA C   + H D      CL R  P P+PG P
Sbjct: 385 RAACRRRAAHGDRPRASGCLARAGPPPSPGAP 416



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>ADRB1_MOUSE (P34971) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 466

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 261 RAKCAPSSVHKDADDMELCLKRQSPGPAPGPP 166
           RA C   + H D      CL R  P P+PG P
Sbjct: 385 RAACRRRAAHGDRPRASGCLARAGPPPSPGAP 416


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,136,543
Number of Sequences: 219361
Number of extensions: 2326236
Number of successful extensions: 7011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6984
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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