ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7d22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480055.1| Oryza sativa (japonica cultivar-group), mRNA 100 1e-17
2dbj|AK106434.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
5gb|AY104814.1| Zea mays PCO089410 mRNA sequence 56 1e-04
6gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 44 0.54
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.54
8gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom... 44 0.54
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
10dbj|AK101683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.54
11gb|AC101789.9| Mus musculus chromosome 1, clone RP24-150F11, com... 44 0.54
12ref|XM_525706.1| PREDICTED: Pan troglodytes LOC470324 (LOC470324... 42 2.1
13gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
14gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, com... 42 2.1
15gb|AC158987.3| Mus musculus BAC clone RP23-366K1 from chromosome... 42 2.1
16emb|AL591605.7| Human DNA sequence from clone RP11-476G6 on chro... 42 2.1
17emb|AL160037.17| Human DNA sequence from clone RP11-289G11 on ch... 42 2.1
18emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC... 42 2.1
19gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, com... 42 2.1
20gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, co... 42 2.1
21gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosom... 42 2.1
22gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, com... 42 2.1
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
24gb|AC012506.9| Homo sapiens BAC clone RP11-498O22 from 2, comple... 42 2.1
25dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
26emb|AL928813.10| Mouse DNA sequence from clone RP23-325P5 on chr... 42 2.1
27ref|NM_005963.2| Homo sapiens myosin, heavy polypeptide 1, skele... 40 8.4
28gb|AY839408.1| Vicia unijuga tRNA-Leu (trnL) gene and trnL-trnF ... 40 8.4
29gb|AY839407.1| Vicia nipponica tRNA-Leu (trnL) gene, partial seq... 40 8.4
30ref|XM_951787.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.4
31ref|XM_328112.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.4
32ref|XM_654346.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.4
33gb|AC022168.6| Homo sapiens chromosome 16 clone RP11-89D3, compl... 40 8.4
34emb|AL627233.9| Human DNA sequence from clone RP11-305I2 on chro... 40 8.4
35gb|AY130764.1| Mus musculus polyductin (Pkhd1) mRNA, complete cds 40 8.4
36emb|AL355927.1|NCB1D1 Neurospora crassa DNA linkage group II BAC... 40 8.4
37emb|AL133015.1|HSM801349 Homo sapiens mRNA; cDNA DKFZp434O2417 (... 40 8.4
38gb|AC131566.1| Homo sapiens chromosome 16 clone RP11-141N14, com... 40 8.4
39gb|AC079848.16| Homo sapiens 3 BAC RP11-124N2 (Roswell Park Canc... 40 8.4
40gb|AC011031.12| Homo sapiens chromosome 8, clone RP11-345I19, co... 40 8.4
41gb|AC007596.7| Homo sapiens chromosome 16 clone RP11-116B6, comp... 40 8.4
42ref|NM_153179.2| Mus musculus polycystic kidney and hepatic dise... 40 8.4
43gb|DQ311955.1| Vicia villosa tRNA-Leu (trnL) gene, intron; chlor... 40 8.4
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
45gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, com... 40 8.4
46emb|X02444.1|CHVFRN1 Broad bean chloroplast genes for tRNA-Leu(C... 40 8.4
47gb|AF111785.1|AF111785 Homo sapiens myosin heavy chain IIx/d mRN... 40 8.4
48gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Canc... 40 8.4
49gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
50emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.4
51gb|M55084.1|VFATRNALEU Vicia faba chloroplast transfer RNA-Leu(CAA) 40 8.4
52emb|X51471.1|CHVFTRNA Vicia faba chloroplast tRNA-Leu, tRNA-Phe,... 40 8.4
53emb|AL365317.22| Mouse DNA sequence from clone RP23-179K8 on chr... 40 8.4 
>ref|XM_480055.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1486

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 126/150 (84%), Gaps = 1/150 (0%)
 Strand = Plus / Minus

                                                                        
Query: 469  tggaagctaacatctaccttttcccatgaaacgcgtctaagacctgtcaccattttttct 528
            ||||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 1106 tggaagctaacatctactttttcccatgatactcgtcgaagtcctgtcaccattttttct 1047

                                                                        
Query: 529  tccagtaagtcaaaatcgcagtctggtaccaaatcttgacactttctcgtgatcgatttc 588
            |||| || |||  |||| ||  ||| | || ||| |||||| | | || | | ||| |||
Sbjct: 1046 tccaatatgtctgaatcacaaactgttgccgaattttgaca-tgtttcatcaccgagttc 988

                                          
Query: 589  ttcagagtattcctcatgtacaatgtgggg 618
            ||| ||||||||||||||||||||||||||
Sbjct: 987  ttctgagtattcctcatgtacaatgtgggg 958



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 286  tggaagtggtctattatgtgctgtatgacatccgctccttcgttcacaaacgcatacttg 345
            ||||||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||
Sbjct: 1208 tggaagtggtctattatgtgctgtatgacatccgcgccttcgttcataaactggtacttg 1149

                 
Query: 346  acctg 350
            |||||
Sbjct: 1148 acctg 1144
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>dbj|AK106434.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C11, full
            insert sequence
          Length = 1486

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 126/150 (84%), Gaps = 1/150 (0%)
 Strand = Plus / Minus

                                                                        
Query: 469  tggaagctaacatctaccttttcccatgaaacgcgtctaagacctgtcaccattttttct 528
            ||||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 1106 tggaagctaacatctactttttcccatgatactcgtcgaagtcctgtcaccattttttct 1047

                                                                        
Query: 529  tccagtaagtcaaaatcgcagtctggtaccaaatcttgacactttctcgtgatcgatttc 588
            |||| || |||  |||| ||  ||| | || ||| |||||| | | || | | ||| |||
Sbjct: 1046 tccaatatgtctgaatcacaaactgttgccgaattttgaca-tgtttcatcaccgagttc 988

                                          
Query: 589  ttcagagtattcctcatgtacaatgtgggg 618
            ||| ||||||||||||||||||||||||||
Sbjct: 987  ttctgagtattcctcatgtacaatgtgggg 958



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 286  tggaagtggtctattatgtgctgtatgacatccgctccttcgttcacaaacgcatacttg 345
            ||||||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||
Sbjct: 1208 tggaagtggtctattatgtgctgtatgacatccgcgccttcgttcataaactggtacttg 1149

                 
Query: 346  acctg 350
            |||||
Sbjct: 1148 acctg 1144
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                           
Query: 286     tggaagtggtctattatgtgctgtatgacatccgctccttcgttcacaaacgcatacttg 345
               ||||||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||
Sbjct: 2406261 tggaagtggtctattatgtgctgtatgacatccgcgccttcgttcataaactggtacttg 2406320

                    
Query: 346     acctg 350
               |||||
Sbjct: 2406321 acctg 2406325



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                           
Query: 469     tggaagctaacatctaccttttcccatgaaacgcgtctaagacctgtcaccattttttct 528
               ||||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 2406484 tggaagctaacatctactttttcccatgatactcgtcgaagtcctgtcaccattttttct 2406543



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                
Query: 586     ttcttcagagtattcctcatgtacaatgtgggg 618
               |||||| ||||||||||||||||||||||||||
Sbjct: 2408710 ttcttctgagtattcctcatgtacaatgtgggg 2408742
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>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0025F03
          Length = 138042

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                         
Query: 286   tggaagtggtctattatgtgctgtatgacatccgctccttcgttcacaaacgcatacttg 345
             ||||||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||
Sbjct: 82231 tggaagtggtctattatgtgctgtatgacatccgcgccttcgttcataaactggtacttg 82290

                  
Query: 346   acctg 350
             |||||
Sbjct: 82291 acctg 82295



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                         
Query: 469   tggaagctaacatctaccttttcccatgaaacgcgtctaagacctgtcaccattttttct 528
             ||||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||
Sbjct: 82454 tggaagctaacatctactttttcccatgatactcgtcgaagtcctgtcaccattttttct 82513



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 586   ttcttcagagtattcctcatgtacaatgtgggg 618
             |||||| ||||||||||||||||||||||||||
Sbjct: 84680 ttcttctgagtattcctcatgtacaatgtgggg 84712
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>gb|AY104814.1| Zea mays PCO089410 mRNA sequence
          Length = 1195

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 468  gtggaagctaacatctaccttttcccatgaaacgcg 503
            |||||| |||||||| ||||||||||||||||||||
Sbjct: 1144 gtggaaactaacatccaccttttcccatgaaacgcg 1109
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>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
              sequence
          Length = 129440

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 471    gaagctaacatctaccttttcccatg 496
              |||||||||||||||| |||||||||
Sbjct: 125382 gaagctaacatctaccctttcccatg 125407
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 471      gaagctaacatctaccttttcccatg 496
                |||||||||||||||| |||||||||
Sbjct: 29293521 gaagctaacatctaccctttcccatg 29293546
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>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
             sequence
          Length = 139788

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 471   gaagctaacatctaccttttcccatg 496
             |||||||||||||||| |||||||||
Sbjct: 62479 gaagctaacatctaccctttcccatg 62454
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 471      gaagctaacatctaccttttcccatg 496
                |||||||||||||||| |||||||||
Sbjct: 29384943 gaagctaacatctaccctttcccatg 29384968
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>dbj|AK101683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058M21, full
            insert sequence
          Length = 1715

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 471  gaagctaacatctaccttttcccatg 496
            |||||||||||||||| |||||||||
Sbjct: 1265 gaagctaacatctaccctttcccatg 1240
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>gb|AC101789.9| Mus musculus chromosome 1, clone RP24-150F11, complete sequence
          Length = 150474

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 515    tcaccattttttcttccagtaa 536
              ||||||||||||||||||||||
Sbjct: 114695 tcaccattttttcttccagtaa 114674
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>ref|XM_525706.1| PREDICTED: Pan troglodytes LOC470324 (LOC470324), mRNA
          Length = 15741

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 235  ggaaatgcgtggtccagtccaggaa 259
            ||||||| |||||||||||||||||
Sbjct: 1755 ggaaatgagtggtccagtccaggaa 1779
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>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0028C22, complete sequence
          Length = 154228

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   gtcatgaattttcatcataat 403
             |||||||||||||||||||||
Sbjct: 55579 gtcatgaattttcatcataat 55559
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>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 120    gcctaccctgtgggctggctgctgt 144
              |||||||| ||||||||||||||||
Sbjct: 201842 gcctacccagtgggctggctgctgt 201818
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>gb|AC158987.3| Mus musculus BAC clone RP23-366K1 from chromosome 9, complete sequence
          Length = 222125

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 38     gttacacacagttaagcaaca 58
              |||||||||||||||||||||
Sbjct: 180289 gttacacacagttaagcaaca 180269
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>emb|AL591605.7| Human DNA sequence from clone RP11-476G6 on chromosome 6, complete
             sequence
          Length = 137494

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   aactaatactgtatgtgtgta 182
             |||||||||||||||||||||
Sbjct: 42810 aactaatactgtatgtgtgta 42830
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>emb|AL160037.17| Human DNA sequence from clone RP11-289G11 on chromosome 6 Contains the
             5' end of a novel gene and a novel gene, complete sequence
          Length = 135714

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 510   acctgtcaccattttttcttc 530
             |||||||||||||||||||||
Sbjct: 46803 acctgtcaccattttttcttc 46823
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>emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4
          Length = 108158

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 257   gaaaccatggggccgaaaattttca 281
             ||||||||||||||| |||||||||
Sbjct: 18139 gaaaccatggggccggaaattttca 18163
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>gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, complete sequence
          Length = 152005

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 384   tcatgaattttcatcataatgcaag 408
             ||||||||||||||||| |||||||
Sbjct: 97467 tcatgaattttcatcatgatgcaag 97491
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>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence
          Length = 223809

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 120    gcctaccctgtgggctggctgctgt 144
              |||||||| ||||||||||||||||
Sbjct: 199048 gcctacccagtgggctggctgctgt 199072
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>gb|AC159883.2| Mus musculus BAC clone RP24-490A17 from chromosome 9, complete sequence
          Length = 140400

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     gttacacacagttaagcaaca 58
              |||||||||||||||||||||
Sbjct: 133600 gttacacacagttaagcaaca 133620
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>gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, complete sequence
          Length = 98232

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 384   tcatgaattttcatcataatgcaag 408
             ||||||||||||||||| |||||||
Sbjct: 43654 tcatgaattttcatcatgatgcaag 43678
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 383      gtcatgaattttcatcataat 403
                |||||||||||||||||||||
Sbjct: 19728312 gtcatgaattttcatcataat 19728292
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>gb|AC012506.9| Homo sapiens BAC clone RP11-498O22 from 2, complete sequence
          Length = 197303

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 235    ggaaatgcgtggtccagtccaggaa 259
              ||||||| |||||||||||||||||
Sbjct: 132929 ggaaatgagtggtccagtccaggaa 132953
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>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0450E05
          Length = 176553

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   gtcatgaattttcatcataat 403
             |||||||||||||||||||||
Sbjct: 73998 gtcatgaattttcatcataat 73978
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>emb|AL928813.10| Mouse DNA sequence from clone RP23-325P5 on chromosome 2, complete
              sequence
          Length = 151207

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    aggcagggcagcctctgcagt 208
              |||||||||||||||||||||
Sbjct: 117645 aggcagggcagcctctgcagt 117665
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>ref|NM_005963.2| Homo sapiens myosin, heavy polypeptide 1, skeletal muscle, adult
            (MYH1), mRNA
          Length = 5925

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 514  gtcaccattttttcttccag 533
            ||||||||||||||||||||
Sbjct: 2648 gtcaccattttttcttccag 2629
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>gb|AY839408.1| Vicia unijuga tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer,
           partial sequence; chloroplast
          Length = 585

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 515 tcaccattttttcttccagt 534
           ||||||||||||||||||||
Sbjct: 302 tcaccattttttcttccagt 283
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>gb|AY839407.1| Vicia nipponica tRNA-Leu (trnL) gene, partial sequence; trnL-trnF
           intergenic spacer, complete sequence; and tRNA-Phe
           (trnF) gene, partial sequence; chloroplast
          Length = 673

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 515 tcaccattttttcttccagt 534
           ||||||||||||||||||||
Sbjct: 340 tcaccattttttcttccagt 321
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>ref|XM_951787.1| Neurospora crassa OR74A hypothetical protein (NCU01674.1) partial
           mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 ggataatgctgtgcgctgcg 449
           ||||||||||||||||||||
Sbjct: 558 ggataatgctgtgcgctgcg 577
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>ref|XM_328112.1| Neurospora crassa OR74A hypothetical protein (NCU01674.1) partial
           mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 ggataatgctgtgcgctgcg 449
           ||||||||||||||||||||
Sbjct: 558 ggataatgctgtgcgctgcg 577
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>ref|XM_654346.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1834.2), mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  gcgtggtccagtccaggaaa 260
            ||||||||||||||||||||
Sbjct: 1268 gcgtggtccagtccaggaaa 1287
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>gb|AC022168.6| Homo sapiens chromosome 16 clone RP11-89D3, complete sequence
          Length = 177322

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   aaaattttcagagctggaag 291
             ||||||||||||||||||||
Sbjct: 14441 aaaattttcagagctggaag 14460
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>emb|AL627233.9| Human DNA sequence from clone RP11-305I2 on chromosome X Contains the
             CYLC1 gene for cylicin, basic protein of sperm head
             cytoskeleton 1, complete sequence
          Length = 75523

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ggttacaaattaacaatcta 98
             ||||||||||||||||||||
Sbjct: 58785 ggttacaaattaacaatcta 58766
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>gb|AY130764.1| Mus musculus polyductin (Pkhd1) mRNA, complete cds
          Length = 12934

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 517  accattttttcttccagtaa 536
            ||||||||||||||||||||
Sbjct: 7073 accattttttcttccagtaa 7054
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>emb|AL355927.1|NCB1D1 Neurospora crassa DNA linkage group II BAC clone B1D1
          Length = 76072

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ggataatgctgtgcgctgcg 449
             ||||||||||||||||||||
Sbjct: 28308 ggataatgctgtgcgctgcg 28327
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>emb|AL133015.1|HSM801349 Homo sapiens mRNA; cDNA DKFZp434O2417 (from clone DKFZp434O2417);
            partial cds
          Length = 2961

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ctgcagtctgcagcttcagg 221
            ||||||||||||||||||||
Sbjct: 2679 ctgcagtctgcagcttcagg 2660
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>gb|AC131566.1| Homo sapiens chromosome 16 clone RP11-141N14, complete sequence
          Length = 91907

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   aaaattttcagagctggaag 291
             ||||||||||||||||||||
Sbjct: 69007 aaaattttcagagctggaag 69026
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>gb|AC079848.16| Homo sapiens 3 BAC RP11-124N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161987

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   ctgcagtctgcagcttcagg 221
             ||||||||||||||||||||
Sbjct: 81280 ctgcagtctgcagcttcagg 81261
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>gb|AC011031.12| Homo sapiens chromosome 8, clone RP11-345I19, complete sequence
          Length = 183771

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     ggttacaaattaacaatcta 98
              ||||||||||||||||||||
Sbjct: 109871 ggttacaaattaacaatcta 109890
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>gb|AC007596.7| Homo sapiens chromosome 16 clone RP11-116B6, complete sequence
          Length = 186210

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   aaaattttcagagctggaag 291
             ||||||||||||||||||||
Sbjct: 41487 aaaattttcagagctggaag 41506
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>ref|NM_153179.2| Mus musculus polycystic kidney and hepatic disease 1 (Pkhd1), mRNA
          Length = 12934

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 517  accattttttcttccagtaa 536
            ||||||||||||||||||||
Sbjct: 7073 accattttttcttccagtaa 7054
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>gb|DQ311955.1| Vicia villosa tRNA-Leu (trnL) gene, intron; chloroplast
          Length = 457

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 515 tcaccattttttcttccagt 534
           ||||||||||||||||||||
Sbjct: 293 tcaccattttttcttccagt 274
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        tactcttatatacatgcatt 27
                ||||||||||||||||||||
Sbjct: 25821230 tactcttatatacatgcatt 25821211
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>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence
          Length = 168538

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  aaaattttcagagctggaag 291
            ||||||||||||||||||||
Sbjct: 6521 aaaattttcagagctggaag 6502
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>emb|X02444.1|CHVFRN1 Broad bean chloroplast genes for tRNA-Leu(CAA) and (UAA) and
           tRNA-Phe
          Length = 1409

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 515 tcaccattttttcttccagt 534
           ||||||||||||||||||||
Sbjct: 890 tcaccattttttcttccagt 871
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>gb|AF111785.1|AF111785 Homo sapiens myosin heavy chain IIx/d mRNA, complete cds
          Length = 5925

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 514  gtcaccattttttcttccag 533
            ||||||||||||||||||||
Sbjct: 2648 gtcaccattttttcttccag 2629
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>gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163881

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 591   cagagtattcctcatgtacaatgt 614
             |||||| |||||||||||||||||
Sbjct: 48089 cagagtgttcctcatgtacaatgt 48066
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        tactcttatatacatgcatt 27
                ||||||||||||||||||||
Sbjct: 25749406 tactcttatatacatgcatt 25749387
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tactcttatatacatgcatt 27
             ||||||||||||||||||||
Sbjct: 42681 tactcttatatacatgcatt 42662
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>gb|M55084.1|VFATRNALEU Vicia faba chloroplast transfer RNA-Leu(CAA)
          Length = 624

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 515 tcaccattttttcttccagt 534
           ||||||||||||||||||||
Sbjct: 410 tcaccattttttcttccagt 391
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>emb|X51471.1|CHVFTRNA Vicia faba chloroplast tRNA-Leu, tRNA-Phe, tRNA-His, ORFX,
            NADH-deydrogenase genes & partial sequence ORFx & psbA
            genes
          Length = 7138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 515  tcaccattttttcttccagt 534
            ||||||||||||||||||||
Sbjct: 1760 tcaccattttttcttccagt 1741
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>emb|AL365317.22| Mouse DNA sequence from clone RP23-179K8 on chromosome 1, complete
             sequence
          Length = 187131

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   ctgtatgtgtgtaagtagaggcag 193
             ||||||||||||| ||||||||||
Sbjct: 57122 ctgtatgtgtgtatgtagaggcag 57145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,770,150
Number of Sequences: 3902068
Number of extensions: 5770150
Number of successful extensions: 101685
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101442
Number of HSP's gapped (non-prelim): 243
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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