>PG1_PEA (Q9ZP40) Plastoglobulin 1, chloroplast precursor|
          Length = 358

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YT++S++L L  AA  LPLL++ +I Q  +    +D   V N        L   
Sbjct: 185 GNWVLLYTASSELLPLL-AAGSLPLLKLDKISQTID----TDSFTVVNST-----TLSSP 234

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAV------------ENIKISEQLQALIAPAILP 310
               +  VSA F+V S   I + F+E ++            ENI I  Q Q  + P +  
Sbjct: 235 FASFSFSVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQ-QLSLGPLLQS 293

Query: 309 RSFFSLQILQFLKTFRAQVPVGGP---ERRSPGGLYYLSYLDRDMLLGR 172
                  +    +    Q P+  P   ER S       +YLD+D+ + R
Sbjct: 294 LGPLENVVANISRVISGQSPLKIPIPGERTS--SWLITTYLDKDLRISR 340

>PAP3_ARATH (O82291) Probable plastid-lipid associated protein 3, chloroplast|
           precursor (AtPap3) (Fibrillin 3)
          Length = 376

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YT+ S+++ L  AA   PLL+V  I Q  +           N++  +   L   
Sbjct: 203 GNWVLLYTAFSELIPLL-AAGSTPLLKVKSISQSID---------TNNLIIDNSTTLSSP 252

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEE------VAVENIKISEQLQAL---IAPAILPRSF 301
               +   +A F+V S   I + F+E      V   ++ + E +      I+ ++L +S 
Sbjct: 253 FADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSL 312

Query: 300 FSLQ--ILQFLKTFRAQVPVGGPERRSPGGLYYL-SYLDRDMLLGR 172
             LQ       +    Q P+  P   + G  + L +YLD+D+ + R
Sbjct: 313 NPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISR 358

>LIPC_SOLDE (O99019) Light-induced protein, chloroplast precursor (C40.4)|
          Length = 326

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YTS S +  L      LPL++V +I Q  +    S+   V+N V ++       
Sbjct: 152 GKWILAYTSFSGLFPLLSRGN-LPLVRVEEISQTID----SESFTVQNSVVFA-----GP 201

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAV------ENIKISEQLQAL---IAPAILPRSF 301
               ++  +AKF+V S + + ++FEE  +      ++I + E ++ L   I  +      
Sbjct: 202 LATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLI 261

Query: 300 FSLQ--ILQFLKTFRAQVPVGGPERRSPGGLYYL-SYLDRDMLLGRSXXXXXXXXFTRAQ 130
            S+Q      +K+  +Q P+  P   +    + L +YLD ++ + R              
Sbjct: 262 TSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGS 321

Query: 129 PLL 121
           PLL
Sbjct: 322 PLL 324

>PAP2_ORYSA (Q6K439) Probable plastid-lipid-associated protein 2, chloroplast|
           precursor (Fibrillin-like protein 2)
          Length = 319

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 26/111 (23%), Positives = 53/111 (47%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YTS S +  L  +     L++V +I Q  +    S+   V+N +++S       
Sbjct: 145 GKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTID----SENFTVQNCIKFS-----GP 195

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQLQALIAPAILPRSF 301
               ++  +AKF+V S + + ++F+E  +   ++++ +       +LP  F
Sbjct: 196 LATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSI-------VLPEKF 239

>LIPC_SOLTU (P80471) Light-induced protein, chloroplast precursor|
           (Chloroplastic drought-induced stress protein CDSP-34)
          Length = 326

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 12/183 (6%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YTS S +  L      LPL++V +I Q  +    S+   V+N V ++       
Sbjct: 152 GKWILAYTSFSGLFPLLSRGN-LPLVRVEEISQTID----SESFTVQNSVVFA-----GP 201

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAV------ENIKISEQLQAL---IAPAILPRSF 301
               ++  +AKF+V S + + ++FEE  +      ++I + E ++ L   I  +      
Sbjct: 202 LATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLI 261

Query: 300 FSLQ--ILQFLKTFRAQVPVGGPERRSPGGLYYL-SYLDRDMLLGRSXXXXXXXXFTRAQ 130
            S+Q       K+  +Q P+  P   +    + L +YLD ++ + R              
Sbjct: 262 TSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGS 321

Query: 129 PLL 121
           PLL
Sbjct: 322 PLL 324

>PAP_CITUN (Q9ZWQ8) Plastid-lipid associated protein, chloroplast precursor|
           (CitPAP)
          Length = 323

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 12/181 (6%)
 Frame = -2

Query: 627 WRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEEQE 448
           W L YTS S +  L      LPL +V +I Q  +    S+   V+N ++++         
Sbjct: 151 WILVYTSFSGLFPLLSRGT-LPLARVEEISQTID----SENFTVQNSIQFA-----GPLA 200

Query: 447 GATLMVSAKFDVLSKRNIFLQFEEVAV------ENIKISEQLQAL-----IAPAILPRSF 301
             ++  +AKF+V S + + ++FEE  +      +++ + E ++ L     ++P     S 
Sbjct: 201 TTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSS 260

Query: 300 FSLQILQFLKTFRAQVPVGGPERRSPGGLYYL-SYLDRDMLLGRSXXXXXXXXFTRAQPL 124
                    KT  +Q P+      S    + L +YLD D+ + R+             PL
Sbjct: 261 VQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPL 320

Query: 123 L 121
           L
Sbjct: 321 L 321

>PAP1_BRACM (Q94FZ9) Plastid lipid-associated protein 1, chloroplast precursor|
          Length = 327

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERL-PLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLE 457
           G W L YTS   +  L   + R+ PL++V +I Q  +    SD   V N VR++      
Sbjct: 153 GKWILVYTSFVGLFPLL--SRRISPLVKVDEISQTID----SDSFTVHNSVRFA-----S 201

Query: 456 EQEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQLQ 337
                +L  +AKF+V S + + ++FE+  +   ++++ ++
Sbjct: 202 PLATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIE 241

>CHRC_CUCSA (Q96398) Chromoplast-specific carotenoid-associated protein,|
           chloroplast precursor
          Length = 322

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YT+ + +  L   +  LPL++V +I Q  +    S+   V+N V++S       
Sbjct: 149 GKWILAYTTFAGLFPLL--SRNLPLVKVEEISQTID----SENLTVQNSVQFS-----GP 197

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQL 340
               ++  +AKF+V S   + ++FEE  +   ++++ +
Sbjct: 198 LATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSI 235

>PAP2_ARATH (O49629) Probable plastid-lipid associated protein 2, chloroplast|
           precursor (AtPap2) (Fibrillin 2)
          Length = 310

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 24/99 (24%), Positives = 51/99 (51%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YTS  ++  L      +PL++V +I Q  +    SD   V+N VR++       
Sbjct: 136 GKWILAYTSFVNLFPLLSRGI-VPLIKVDEISQTID----SDNFTVQNSVRFA-----GP 185

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQLQ 337
               ++  +AKF++ S + + ++FE+  +   ++++ ++
Sbjct: 186 LGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIE 224

>PAP1_ARATH (O81439) Probable plastid-lipid associated protein 1, chloroplast|
           precursor (AtPap1) (Fibrillin 1)
          Length = 318

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YTS   +  L       PL++V +I Q  +    SD   V+N VR++       
Sbjct: 144 GKWILAYTSFVGLFPLLSRRIE-PLVKVDEISQTID----SDSFTVQNSVRFA-----GP 193

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAV------ENIKISEQLQAL 331
               +   +AKF++ S + + ++FE+  +      ++I+I E ++ L
Sbjct: 194 FSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVL 240

>PAP3_BRACM (Q94KU5) Plastid lipid-associated protein 3, chloroplast precursor|
          Length = 360

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIEN---L 463
           G W L YT+ S++L L  AA   PLL+V  I Q  + K              SI+N   L
Sbjct: 187 GNWVLLYTAFSELLPLL-AAGSTPLLKVKSISQSIDTKS------------LSIDNSTTL 233

Query: 462 LEEQEGATLMVSAKFDVLSKRNIFLQFEEVAVE--NIKISEQLQALIAP-------AILP 310
                  +   +A F+V +   I + F+E  ++   IK S  L   +         + L 
Sbjct: 234 SSPFADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLK 293

Query: 309 RSFFSLQ--ILQFLKTFRAQVPVGGPERRSPGGLYYL-SYLDRDMLLGR 172
           +S   LQ       +    Q P+  P   + G  + L +YLD+D+ + R
Sbjct: 294 QSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISR 342

>PAP2_BRACM (Q94KU6) Plastid lipid-associated protein 2, chloroplast precursor|
          Length = 319

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 12/183 (6%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YTS   +  L      +PL++V +I Q  +    SD   V N V ++       
Sbjct: 145 GKWILAYTSFVGLFPLLSRGI-VPLVKVDEISQTID----SDNFTVENSVLFA-----GP 194

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAV------ENIKISEQLQALIAPAILPRSFFSL 292
               ++  +AKF++ S + + ++FEE  +      ++I+I E ++ L     L      L
Sbjct: 195 LATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQKIDLTPIRGLL 254

Query: 291 QILQFLKTFRAQVPVGGPERR------SPGGLYYLSYLDRDMLLGRSXXXXXXXXFTRAQ 130
             +Q   T  A+     P  +      S       +YLD+D+ + R              
Sbjct: 255 TSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGS 314

Query: 129 PLL 121
           PLL
Sbjct: 315 PLL 317

>PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3, chloroplast|
           precursor
          Length = 374

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 27/98 (27%), Positives = 45/98 (45%)
 Frame = -2

Query: 633 GTWRLCYTSASDVLVLFEAAERLPLLQVGQIYQKFECKGRSDGGIVRNVVRWSIENLLEE 454
           G W L YT+ S++L +  A    PL +V +I Q+ +    +       +V  S   +   
Sbjct: 199 GNWILIYTAYSELLPIL-AVGAAPLFKVDEISQEIDTNSMT-------IVNAS--TISSP 248

Query: 453 QEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQL 340
               +   +A FDV S   I +QF+E + +  KIS  +
Sbjct: 249 FASFSFSATASFDVQSPSRIEVQFKEGSFQPPKISSSV 286

>T2D2_HAEIN (P44413) Type II restriction enzyme HindII (EC 3.1.21.4)|
           (Endonuclease HindII) (R.HindII)
          Length = 257

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 480 WSIENLLEEQEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQLQALIA 325
           WSIENL EE++  T       D+L  ++ F +  +V   NI  S Q   +I+
Sbjct: 98  WSIENLFEEKQNDTA------DILLVKDQFYELLDVKTRNISKSAQAPNIIS 143

>T2C2_HAEIN (P17743) Type II restriction enzyme HincII (EC 3.1.21.4)|
           (Endonuclease HincII) (R.HincII)
          Length = 257

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 480 WSIENLLEEQEGATLMVSAKFDVLSKRNIFLQFEEVAVENIKISEQLQALIA 325
           WSIENL EE++  T       D+L  ++ F +  +V   NI  S Q   +I+
Sbjct: 98  WSIENLFEEKQNDTA------DILLVKDQFYELLDVKRRNISKSAQAPNIIS 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,066,751
Number of Sequences: 219361
Number of extensions: 1572209
Number of successful extensions: 4227
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4225
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)