>ENV_SIVSP (P19503) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 889

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 63  KMLPKCRCREANDPRSXAPNIAGTPAPSSTQRYAAXGTTRP 185
           K+ P C     N   +    + GTPAP++TQ      +T P
Sbjct: 103 KLTPLCITMRCNKSETDRWGLTGTPAPTTTQTTTTQASTTP 143

>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
            (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 72   PKCRCREANDPRSXAPNIAGTPAPSSTQRYAAXGTTRPPGT 194
            P  +  EAN+P++  P+      P + Q+  A   ++PP +
Sbjct: 1762 PAQKSEEANEPKAEKPDATADAEPDANQKAEAAPESQPPAS 1802

>2A5N_ARATH (Q9LU89) Serine/threonine protein phosphatase 2A 59 kDa regulatory|
           subunit B' eta isoform (PP2A, B' subunit, eta isoform)
           (AtB' eta)
          Length = 510

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 177 LSXXQHIFESSSGPEFQQCSVPYF 106
           L+  + + E++  PEFQ+C VP F
Sbjct: 373 LNELEEVLEATQPPEFQRCMVPLF 396

>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)|
           (Semaphorin C-like 1) (M-Sema F)
          Length = 834

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 63  KMLP-KCRCREANDPRSXAPNIAGTPAPSSTQRYAAXG 173
           K++P   RC+    P S  P I G P PS T+ +   G
Sbjct: 745 KIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGG 782

>2A5T_ARATH (Q8LF36) Serine/threonine protein phosphatase 2A 57 kDa regulatory|
           subunit B' theta isoform (PP2A, B' subunit, theta
           isoform) (AtB' theta)
          Length = 492

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 177 LSXXQHIFESSSGPEFQQCSVPYF 106
           L+  + + E++  PEFQ+C VP F
Sbjct: 352 LNELEEVLEATQPPEFQRCMVPLF 375

>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor|
          Length = 833

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 63  KMLP-KCRCREANDPRSXAPNIAGTPAPSSTQRYAAXG 173
           K++P   RC+    P S  P I G P PS T+ +   G
Sbjct: 744 KIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGG 781

>BAS1_YEAST (P22035) Myb-like DNA-binding protein BAS1|
          Length = 811

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 108 SXAPNIAGT--PAPSSTQRYAAXGTTRPP 188
           S +PN  GT   APSST  Y   G+  PP
Sbjct: 589 SMSPNFNGTNGKAPSSTASYTTSGSEMPP 617


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,884,343
Number of Sequences: 219361
Number of extensions: 388190
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)