| Clone Name | rbaal19k08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F01, full insert sequence Length = 2516 Score = 145 bits (73), Expect = 2e-31 Identities = 199/241 (82%) Strand = Plus / Minus Query: 358 ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417 |||||||||||| ||||||||||| || || ||||||||||| | || || |||| | Sbjct: 2110 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 2051 Query: 418 gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477 || ||||| ||||| |||| |||||||||||||| || ||||||||||||||||| || Sbjct: 2050 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 1991 Query: 478 ccccattaccagccataccccgacccgcatccacgtgccaccccctagatttatgagcaa 537 |||||||||||||||||||| || | |||||| || || || || | |||| | ||| Sbjct: 1990 tcccattaccagccataccccaactctcatccatgtccctccacccaagtttactaacaa 1931 Query: 538 gtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaatcc 597 ||||||||| | ||| |||||||||||||||| || |||||||| |||||||||||||| Sbjct: 1930 gtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaatcc 1871 Query: 598 t 598 | Sbjct: 1870 t 1870
>dbj|AK059703.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D03, full insert sequence Length = 2272 Score = 145 bits (73), Expect = 2e-31 Identities = 199/241 (82%) Strand = Plus / Minus Query: 358 ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417 |||||||||||| ||||||||||| || || ||||||||||| | || || |||| | Sbjct: 1866 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 1807 Query: 418 gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477 || ||||| ||||| |||| |||||||||||||| || ||||||||||||||||| || Sbjct: 1806 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 1747 Query: 478 ccccattaccagccataccccgacccgcatccacgtgccaccccctagatttatgagcaa 537 |||||||||||||||||||| || | |||||| || || || || | |||| | ||| Sbjct: 1746 tcccattaccagccataccccaactctcatccatgtccctccacccaagtttactaacaa 1687 Query: 538 gtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaatcc 597 ||||||||| | ||| |||||||||||||||| || |||||||| |||||||||||||| Sbjct: 1686 gtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaatcc 1627 Query: 598 t 598 | Sbjct: 1626 t 1626
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 105 bits (53), Expect = 2e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 358 ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417 |||||||||||| ||||||||||| || || ||||||||||| | || || |||| | Sbjct: 26655170 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 26655229 Query: 418 gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477 || ||||| ||||| |||| |||||||||||||| || ||||||||||||||||| || Sbjct: 26655230 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 26655289 Query: 478 ccccattaccagccatacccc 498 |||||||||||||||||||| Sbjct: 26655290 tcccattaccagccatacccc 26655310 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 535 caagtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaa 594 |||||||||||| | ||| |||||||||||||||| || |||||||| ||||||||||| Sbjct: 26655443 caagtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaa 26655502 Query: 595 tcct 598 |||| Sbjct: 26655503 tcct 26655506
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 105 bits (53), Expect = 2e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 358 ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417 |||||||||||| ||||||||||| || || ||||||||||| | || || |||| | Sbjct: 26583339 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 26583398 Query: 418 gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477 || ||||| ||||| |||| |||||||||||||| || ||||||||||||||||| || Sbjct: 26583399 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 26583458 Query: 478 ccccattaccagccatacccc 498 |||||||||||||||||||| Sbjct: 26583459 tcccattaccagccatacccc 26583479 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 535 caagtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaa 594 |||||||||||| | ||| |||||||||||||||| || |||||||| ||||||||||| Sbjct: 26583612 caagtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaa 26583671 Query: 595 tcct 598 |||| Sbjct: 26583672 tcct 26583675
>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101173 Score = 105 bits (53), Expect = 2e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 358 ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417 |||||||||||| ||||||||||| || || ||||||||||| | || || |||| | Sbjct: 74040 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 74099 Query: 418 gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477 || ||||| ||||| |||| |||||||||||||| || ||||||||||||||||| || Sbjct: 74100 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 74159 Query: 478 ccccattaccagccatacccc 498 |||||||||||||||||||| Sbjct: 74160 tcccattaccagccatacccc 74180 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 535 caagtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaa 594 |||||||||||| | ||| |||||||||||||||| || |||||||| ||||||||||| Sbjct: 74313 caagtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaa 74372 Query: 595 tcct 598 |||| Sbjct: 74373 tcct 74376
>gb|AY109051.1| Zea mays PCO106076 mRNA sequence Length = 1172 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 419 acgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtaca 470 ||||| ||||| || || || ||||||||||| ||||||||||||||||||| Sbjct: 829 acgtagacgacatctgttagggagctgtgggttcgtccgtagaaaatgtaca 778
>emb|CR752642.5| Zebrafish DNA sequence from clone DKEY-165D23 in linkage group 5, complete sequence Length = 16751 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gcaaatgaatcagccctcgca 88 ||||||||||||||||||||| Sbjct: 249 gcaaatgaatcagccctcgca 229
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5, complete sequence Length = 142908 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gcaaatgaatcagccctcgca 88 ||||||||||||||||||||| Sbjct: 141157 gcaaatgaatcagccctcgca 141137
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tttatacatattaactattt 150 |||||||||||||||||||| Sbjct: 322619 tttatacatattaactattt 322600
>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence Length = 203891 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gtttgcctgagccagggaga 419 |||||||||||||||||||| Sbjct: 193511 gtttgcctgagccagggaga 193530
>ref|XM_746503.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g12350) partial mRNA Length = 1500 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 tcagggtgcttgaggtctccgtga 329 ||||||||||||||||||| |||| Sbjct: 1411 tcagggtgcttgaggtctcggtga 1388
>gb|AC145509.2| Gasterosteus aculeatus clone CH213-128O17, complete sequence Length = 213989 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gcattgctgcacacattgca 115 |||||||||||||||||||| Sbjct: 211860 gcattgctgcacacattgca 211841
>emb|AL590867.10| Human DNA sequence from clone RP11-475C16 on chromosome 6 Contains a ribosomal protein L27a (60S ribosomal protein L27a) (RPL27A) pseudogene and a novel gene, complete sequence Length = 63621 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 acttctatttatacatatta 143 |||||||||||||||||||| Sbjct: 14745 acttctatttatacatatta 14726
>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete sequence Length = 108373 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 ttctctaggccacaaaccctgatg 377 ||||||||||||||||||| |||| Sbjct: 45453 ttctctaggccacaaacccagatg 45430
>emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 in linkage group 18, complete sequence Length = 143863 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 atacatattaactatttaca 153 |||||||||||||||||||| Sbjct: 83431 atacatattaactatttaca 83412
>gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete sequence Length = 139631 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tttatacatattaactattt 150 |||||||||||||||||||| Sbjct: 133113 tttatacatattaactattt 133094
>gb|AC107317.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-340A17, complete sequence Length = 228371 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 atgcaggatgcagcagcaac 284 |||||||||||||||||||| Sbjct: 207380 atgcaggatgcagcagcaac 207399
>gb|AY108057.1| Zea mays PCO106075 mRNA sequence Length = 668 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 gagctgtgggtccgtccgtagaaa 463 ||||||||||| |||||||||||| Sbjct: 375 gagctgtgggttcgtccgtagaaa 352
>dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-259P6, complete sequence Length = 147533 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gtttgcctgagccagggaga 419 |||||||||||||||||||| Sbjct: 28201 gtttgcctgagccagggaga 28220
>emb|CT573151.3| Platypus DNA sequence from clone CLM1-42M21, complete sequence Length = 120606 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 cgagctgtgggtccgtccgt 458 |||||||||||||||||||| Sbjct: 55476 cgagctgtgggtccgtccgt 55457
>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724 Length = 820587 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tcgcattgctgcacacattg 113 |||||||||||||||||||| Sbjct: 430043 tcgcattgctgcacacattg 430062
>gb|CP000223.1| Drosophila melanogaster genomic scaffold 211000022280790 Length = 626829 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcttacacttctatttatac 137 |||||||||||||||||||| Sbjct: 559851 tcttacacttctatttatac 559832
>gb|CP000203.1| Drosophila melanogaster genomic scaffold 211000022280760 Length = 90124 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcttacacttctatttatac 137 |||||||||||||||||||| Sbjct: 36176 tcttacacttctatttatac 36157
>gb|CP000191.1| Drosophila melanogaster genomic scaffold 211000022280172 Length = 132906 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tcttacacttctatttatac 137 |||||||||||||||||||| Sbjct: 30245 tcttacacttctatttatac 30264
>gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complete sequence Length = 169272 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gtttgcctgagccagggaga 419 |||||||||||||||||||| Sbjct: 132446 gtttgcctgagccagggaga 132427 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,492,903 Number of Sequences: 3902068 Number of extensions: 4492903 Number of successful extensions: 102120 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102012 Number of HSP's gapped (non-prelim): 108 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)