ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19k08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK064822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
2dbj|AK059703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
5emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374... 105 2e-19
6gb|AY109051.1| Zea mays PCO106076 mRNA sequence 56 1e-04
7emb|CR752642.5| Zebrafish DNA sequence from clone DKEY-165D23 in... 42 2.1
8emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 42 2.1
9gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 8.1
10gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome... 40 8.1
11ref|XM_746503.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.1
12gb|AC145509.2| Gasterosteus aculeatus clone CH213-128O17, comple... 40 8.1
13emb|AL590867.10| Human DNA sequence from clone RP11-475C16 on ch... 40 8.1
14emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chr... 40 8.1
15emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 i... 40 8.1
16gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete se... 40 8.1
17gb|AC107317.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.1
18gb|AY108057.1| Zea mays PCO106075 mRNA sequence 40 8.1
19dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.1
20emb|CT573151.3| Platypus DNA sequence from clone CLM1-42M21, com... 40 8.1
21gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 40 8.1
22gb|CP000223.1| Drosophila melanogaster genomic scaffold 21100002... 40 8.1
23gb|CP000203.1| Drosophila melanogaster genomic scaffold 21100002... 40 8.1
24gb|CP000191.1| Drosophila melanogaster genomic scaffold 21100002... 40 8.1
25gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complet... 40 8.1

>dbj|AK064822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F01, full
            insert sequence
          Length = 2516

 Score =  145 bits (73), Expect = 2e-31
 Identities = 199/241 (82%)
 Strand = Plus / Minus

                                                                        
Query: 358  ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417
            |||||||||||| ||||||||||| || || ||||||||||| |  || || ||||  | 
Sbjct: 2110 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 2051

                                                                        
Query: 418  gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477
             || ||||| ||||| ||||  |||||||||||||| || ||||||||||||||||| ||
Sbjct: 2050 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 1991

                                                                        
Query: 478  ccccattaccagccataccccgacccgcatccacgtgccaccccctagatttatgagcaa 537
             |||||||||||||||||||| || | |||||| || || || || |  ||||  | |||
Sbjct: 1990 tcccattaccagccataccccaactctcatccatgtccctccacccaagtttactaacaa 1931

                                                                        
Query: 538  gtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaatcc 597
            ||||||||| | ||| |||||||||||||||| ||  |||||||| ||||||||||||||
Sbjct: 1930 gtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaatcc 1871

             
Query: 598  t 598
            |
Sbjct: 1870 t 1870



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>dbj|AK059703.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D03, full
            insert sequence
          Length = 2272

 Score =  145 bits (73), Expect = 2e-31
 Identities = 199/241 (82%)
 Strand = Plus / Minus

                                                                        
Query: 358  ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417
            |||||||||||| ||||||||||| || || ||||||||||| |  || || ||||  | 
Sbjct: 1866 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 1807

                                                                        
Query: 418  gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477
             || ||||| ||||| ||||  |||||||||||||| || ||||||||||||||||| ||
Sbjct: 1806 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 1747

                                                                        
Query: 478  ccccattaccagccataccccgacccgcatccacgtgccaccccctagatttatgagcaa 537
             |||||||||||||||||||| || | |||||| || || || || |  ||||  | |||
Sbjct: 1746 tcccattaccagccataccccaactctcatccatgtccctccacccaagtttactaacaa 1687

                                                                        
Query: 538  gtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaatcc 597
            ||||||||| | ||| |||||||||||||||| ||  |||||||| ||||||||||||||
Sbjct: 1686 gtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaatcc 1627

             
Query: 598  t 598
            |
Sbjct: 1626 t 1626



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  105 bits (53), Expect = 2e-19
 Identities = 119/141 (84%)
 Strand = Plus / Plus

                                                                            
Query: 358      ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417
                |||||||||||| ||||||||||| || || ||||||||||| |  || || ||||  | 
Sbjct: 26655170 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 26655229

                                                                            
Query: 418      gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477
                 || ||||| ||||| ||||  |||||||||||||| || ||||||||||||||||| ||
Sbjct: 26655230 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 26655289

                                     
Query: 478      ccccattaccagccatacccc 498
                 ||||||||||||||||||||
Sbjct: 26655290 tcccattaccagccatacccc 26655310



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 535      caagtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaa 594
                |||||||||||| | ||| |||||||||||||||| ||  |||||||| |||||||||||
Sbjct: 26655443 caagtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaa 26655502

                    
Query: 595      tcct 598
                ||||
Sbjct: 26655503 tcct 26655506



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  105 bits (53), Expect = 2e-19
 Identities = 119/141 (84%)
 Strand = Plus / Plus

                                                                            
Query: 358      ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417
                |||||||||||| ||||||||||| || || ||||||||||| |  || || ||||  | 
Sbjct: 26583339 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 26583398

                                                                            
Query: 418      gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477
                 || ||||| ||||| ||||  |||||||||||||| || ||||||||||||||||| ||
Sbjct: 26583399 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 26583458

                                     
Query: 478      ccccattaccagccatacccc 498
                 ||||||||||||||||||||
Sbjct: 26583459 tcccattaccagccatacccc 26583479



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 535      caagtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaa 594
                |||||||||||| | ||| |||||||||||||||| ||  |||||||| |||||||||||
Sbjct: 26583612 caagtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaa 26583671

                    
Query: 595      tcct 598
                ||||
Sbjct: 26583672 tcct 26583675



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>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101173

 Score =  105 bits (53), Expect = 2e-19
 Identities = 119/141 (84%)
 Strand = Plus / Plus

                                                                         
Query: 358   ctaggccacaaaccctgatgaagacgaagacccgtatatctcgtttgcctgagccaggga 417
             |||||||||||| ||||||||||| || || ||||||||||| |  || || ||||  | 
Sbjct: 74040 ctaggccacaaatcctgatgaagatgatgaaccgtatatctcttccgcttgcgccaccgg 74099

                                                                         
Query: 418   gacgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtacacgaagac 477
              || ||||| ||||| ||||  |||||||||||||| || ||||||||||||||||| ||
Sbjct: 74100 aacatacaccacgtcggtcaatgagctgtgggtccggccatagaaaatgtacacgaatac 74159

                                  
Query: 478   ccccattaccagccatacccc 498
              ||||||||||||||||||||
Sbjct: 74160 tcccattaccagccatacccc 74180



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 535   caagtatgtgtttatgagaatgcacatcaccggcagcagtggaacgaatgggcagatgaa 594
             |||||||||||| | ||| |||||||||||||||| ||  |||||||| |||||||||||
Sbjct: 74313 caagtatgtgttcacgaggatgcacatcaccggcaacaacggaacgaaggggcagatgaa 74372

                 
Query: 595   tcct 598
             ||||
Sbjct: 74373 tcct 74376



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>gb|AY109051.1| Zea mays PCO106076 mRNA sequence
          Length = 1172

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 419 acgtacacgacgtccgtcagcgagctgtgggtccgtccgtagaaaatgtaca 470
           ||||| ||||| || || || ||||||||||| |||||||||||||||||||
Sbjct: 829 acgtagacgacatctgttagggagctgtgggttcgtccgtagaaaatgtaca 778



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>emb|CR752642.5| Zebrafish DNA sequence from clone DKEY-165D23 in linkage group 5,
           complete sequence
          Length = 16751

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 68  gcaaatgaatcagccctcgca 88
           |||||||||||||||||||||
Sbjct: 249 gcaaatgaatcagccctcgca 229



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>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     gcaaatgaatcagccctcgca 88
              |||||||||||||||||||||
Sbjct: 141157 gcaaatgaatcagccctcgca 141137



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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    tttatacatattaactattt 150
              ||||||||||||||||||||
Sbjct: 322619 tttatacatattaactattt 322600



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>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence
          Length = 203891

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    gtttgcctgagccagggaga 419
              ||||||||||||||||||||
Sbjct: 193511 gtttgcctgagccagggaga 193530



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>ref|XM_746503.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g12350) partial
            mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 306  tcagggtgcttgaggtctccgtga 329
            ||||||||||||||||||| ||||
Sbjct: 1411 tcagggtgcttgaggtctcggtga 1388



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>gb|AC145509.2| Gasterosteus aculeatus clone CH213-128O17, complete sequence
          Length = 213989

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gcattgctgcacacattgca 115
              ||||||||||||||||||||
Sbjct: 211860 gcattgctgcacacattgca 211841



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>emb|AL590867.10| Human DNA sequence from clone RP11-475C16 on chromosome 6 Contains a
             ribosomal protein L27a (60S ribosomal protein L27a)
             (RPL27A) pseudogene and a novel gene, complete sequence
          Length = 63621

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   acttctatttatacatatta 143
             ||||||||||||||||||||
Sbjct: 14745 acttctatttatacatatta 14726



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>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete
             sequence
          Length = 108373

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   ttctctaggccacaaaccctgatg 377
             ||||||||||||||||||| ||||
Sbjct: 45453 ttctctaggccacaaacccagatg 45430



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>emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 in linkage group 18,
             complete sequence
          Length = 143863

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   atacatattaactatttaca 153
             ||||||||||||||||||||
Sbjct: 83431 atacatattaactatttaca 83412



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>gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete sequence
          Length = 139631

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    tttatacatattaactattt 150
              ||||||||||||||||||||
Sbjct: 133113 tttatacatattaactattt 133094



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>gb|AC107317.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-340A17, complete
              sequence
          Length = 228371

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    atgcaggatgcagcagcaac 284
              ||||||||||||||||||||
Sbjct: 207380 atgcaggatgcagcagcaac 207399



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>gb|AY108057.1| Zea mays PCO106075 mRNA sequence
          Length = 668

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 440 gagctgtgggtccgtccgtagaaa 463
           ||||||||||| ||||||||||||
Sbjct: 375 gagctgtgggttcgtccgtagaaa 352



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>dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-259P6, complete
             sequence
          Length = 147533

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   gtttgcctgagccagggaga 419
             ||||||||||||||||||||
Sbjct: 28201 gtttgcctgagccagggaga 28220



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>emb|CT573151.3| Platypus DNA sequence from clone CLM1-42M21, complete sequence
          Length = 120606

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   cgagctgtgggtccgtccgt 458
             ||||||||||||||||||||
Sbjct: 55476 cgagctgtgggtccgtccgt 55457



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>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tcgcattgctgcacacattg 113
              ||||||||||||||||||||
Sbjct: 430043 tcgcattgctgcacacattg 430062



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>gb|CP000223.1| Drosophila melanogaster genomic scaffold 211000022280790
          Length = 626829

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    tcttacacttctatttatac 137
              ||||||||||||||||||||
Sbjct: 559851 tcttacacttctatttatac 559832



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>gb|CP000203.1| Drosophila melanogaster genomic scaffold 211000022280760
          Length = 90124

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tcttacacttctatttatac 137
             ||||||||||||||||||||
Sbjct: 36176 tcttacacttctatttatac 36157



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>gb|CP000191.1| Drosophila melanogaster genomic scaffold 211000022280172
          Length = 132906

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   tcttacacttctatttatac 137
             ||||||||||||||||||||
Sbjct: 30245 tcttacacttctatttatac 30264



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>gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complete sequence
          Length = 169272

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    gtttgcctgagccagggaga 419
              ||||||||||||||||||||
Sbjct: 132446 gtttgcctgagccagggaga 132427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,492,903
Number of Sequences: 3902068
Number of extensions: 4492903
Number of successful extensions: 102120
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102012
Number of HSP's gapped (non-prelim): 108
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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