Clone Information

BLAST Search Result

Clone Name	rbaal19j12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470012.1\| Oryza sativa (japonica cultivar-group), mRNA	262	2e-66
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	256	9e-65
3	gb\|AC135563.5\| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom...	256	9e-65
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	256	9e-65
5	ref\|XM_470017.1\| Oryza sativa (japonica cultivar-group), mRNA	198	2e-47
6	ref\|XM_470014.1\| Oryza sativa (japonica cultivar-group), mRNA	198	2e-47
7	ref\|XM_470018.1\| Oryza sativa (japonica cultivar-group), mRNA	186	7e-44
8	ref\|XM_470015.1\| Oryza sativa (japonica cultivar-group), mRNA	186	7e-44
9	gb\|AC135958.2\| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom...	184	3e-43
10	ref\|XM_470013.1\| Oryza sativa (japonica cultivar-group), mRNA	159	2e-35
11	gb\|AY109924.1\| Zea mays CL64795_1 mRNA sequence	159	2e-35
12	ref\|XM_470021.1\| Oryza sativa (japonica cultivar-group), mRNA	107	5e-20
13	ref\|XM_960207.1\| Neurospora crassa OR74A hypothetical protein (N...	46	0.17
14	ref\|XM_330635.1\| Neurospora crassa OR74A hypothetical protein (N...	46	0.17
15	gb\|AC025775.6\| Homo sapiens chromosome 5 clone CTD-2299B9, compl...	44	0.66
16	emb\|BX950251.1\| Gallus gallus finished cDNA, clone ChEST706m10	44	0.66
17	gb\|AC026709.7\| Homo sapiens chromosome 5 clone CTD-2084I18, comp...	44	0.66
18	gb\|AY023913.1\| Oryza sativa microsatellite MRG6238 containing (A...	42	2.6
19	gb\|AY023910.1\| Oryza sativa microsatellite MRG6235 containing (A...	42	2.6
20	gb\|AC007865.8\| Trypanosoma brucei chromosome 2 clone RPCI93-30M2...	42	2.6
21	gb\|AE017150.2\| Trypanosoma brucei chromosome 2, complete sequence	42	2.6
22	ref\|XM_946581.1\| Trypanosoma brucei TREU927 hypothetical protein...	42	2.6
23	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	42	2.6
24	gb\|AC132336.3\| Mus musculus BAC clone RP24-230N9 from chromosome...	42	2.6
25	gb\|CP000091.1\| Ralstonia eutropha JMP134 chromosome 2, complete ...	42	2.6
26	gb\|AC105934.3\| Homo sapiens chromosome 3 clone RP11-620K19, comp...	42	2.6
27	emb\|AL031734.9\|HS652L8 Human DNA sequence from clone RP4-652L8 o...	42	2.6
28	gb\|AC104446.2\| Homo sapiens chromosome 3 clone RP11-447A21, comp...	42	2.6
29	gb\|AE003849.1\| Xylella fastidiosa 9a5c, complete genome	42	2.6
30	emb\|CT030196.9\| Mouse DNA sequence from clone RP23-282B14 on chr...	42	2.6

>ref|XM_470012.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1912

 Score =  262 bits (132), Expect = 2e-66
 Identities = 237/272 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
            ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 1670 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 1611

                                                                        
Query: 281  ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
            ||||||||| ||||||||||||||||| |||   | ||||||||||| ||||||||| ||
Sbjct: 1610 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 1551

                                                                        
Query: 341  cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
            |||||| || |  |||||||||||||| || ||||| |||||||| || |||||||| ||
Sbjct: 1550 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 1491

                                                                        
Query: 401  ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
            ||||||||| ||||||||||| |||||  ||||||| ||   |||||||||| |||||||
Sbjct: 1490 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 1431

                                            
Query: 461  cgcgacgtgcgaccagtacctctccatgagct 492
            |  |||||||||||| ||||| |||| |||||
Sbjct: 1430 catgacgtgcgaccaatacctgtccaagagct 1399



 Score =  135 bits (68), Expect = 2e-28
 Identities = 176/212 (83%)
 Strand = Plus / Minus

                                                                        
Query: 537  gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
            |||||||| | ||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 1354 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 1295

                                                                        
Query: 597  ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 656
            ||||| || || || ||||| ||    |||||||||||||| || |  ||  ||| ||||
Sbjct: 1294 ttgtcagatgatgtgggcacatagcaagctttctgccagttatcaagaccaaccgtagcg 1235

                                                                        
Query: 657  aagttgcgctcctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccg 716
            || ||||||||||| |||||||| |||||||||||||| |||| ||| || ||||| || 
Sbjct: 1234 aaattgcgctcctcaatgtggagcaggtagatgtctgaatccaagatggcattctgccca 1175

                                            
Query: 717  atgtggtagtaccaccgcggtatgaccttgtc 748
            ||||||||||||||||| ||||||| ||||||
Sbjct: 1174 atgtggtagtaccaccgtggtatgatcttgtc 1143

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  256 bits (129), Expect = 9e-65
 Identities = 228/261 (87%)
 Strand = Plus / Minus

                                                                            
Query: 221      tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
                ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 33336982 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 33336923

                                                                            
Query: 281      ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
                ||||||||| ||||||||||||||||| |||   | ||||||||||| ||||||||| ||
Sbjct: 33336922 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 33336863

                                                                            
Query: 341      cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
                |||||| || |  |||||||||||||| || ||||| |||||||| || |||||||| ||
Sbjct: 33336862 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 33336803

                                                                            
Query: 401      ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
                ||||||||| ||||||||||| |||||  ||||||| ||   |||||||||| |||||||
Sbjct: 33336802 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 33336743

                                     
Query: 461      cgcgacgtgcgaccagtacct 481
                |  |||||||||||| |||||
Sbjct: 33336742 catgacgtgcgaccaatacct 33336722



 Score =  184 bits (93), Expect = 3e-43
 Identities = 219/261 (83%)
 Strand = Plus / Minus

                                                                            
Query: 221      tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
                ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct: 33349831 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 33349772

                                                                            
Query: 281      ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
                ||||||||| ||||||||||||||||| ||    | |||| ||||||||| | | || ||
Sbjct: 33349771 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 33349712

                                                                            
Query: 341      cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
                |||||   ||||  ||||||||||||| || ||||| |||||||  || |||||||| ||
Sbjct: 33349711 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 33349652

                                                                            
Query: 401      ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
                ||||||||| ||||||||||| |||||  ||||||| || | |||||||||| |||||||
Sbjct: 33349651 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 33349592

                                     
Query: 461      cgcgacgtgcgaccagtacct 481
                |  ||| ||||||| ||||||
Sbjct: 33349591 catgacatgcgacctgtacct 33349571



 Score =  180 bits (91), Expect = 4e-42
 Identities = 202/239 (84%)
 Strand = Plus / Minus

                                                                            
Query: 243      tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 302
                |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 33358008 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 33357949

                                                                            
Query: 303      agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 362
                |||||||||   | |||||||||||||||||| ||  ||||||| || |  |||||||||
Sbjct: 33357948 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 33357889

                                                                            
Query: 363      gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 422
                 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| |||
Sbjct: 33357888 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 33357829

                                                                           
Query: 423      ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 481
                 ||||   |||||| || | |||||||||| ||||||||  ||| ||||||||||||||
Sbjct: 33357828 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 33357770



 Score =  129 bits (65), Expect = 1e-26
 Identities = 216/264 (81%), Gaps = 3/264 (1%)
 Strand = Plus / Minus

                                                                            
Query: 221      tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
                ||||||||| |||||||| || |||||||| |||||| | |||||||||||| |||||||
Sbjct: 33343595 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 33343536

                                                                            
Query: 281      ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
                ||||||||| || |||||||||||| | |||   | |||||||||||||||||| ||  |
Sbjct: 33343535 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 33343476

                                                                            
Query: 341      cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 397
                |||||| || |  || ||||||||| || | || ||||| |||||||| || ||||||||
Sbjct: 33343475 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 33343416

                                                                            
Query: 398      gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 457
                 |||||||| || ||||||| |||  ||||   |||||| || | |||||||||  ||||
Sbjct: 33343415 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 33343356

                                        
Query: 458      ctgcgcgacgtgcgaccagtacct 481
                ||||  ||| || |||||||||||
Sbjct: 33343355 ctgcatgacatgtgaccagtacct 33343332



 Score =  107 bits (54), Expect = 5e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                            
Query: 231      gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 290
                |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct: 33383523 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 33383464

                          
Query: 291      gcggcgaagc 300
                ||||||||||
Sbjct: 33383463 gcggcgaagc 33383454



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 667      cctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccgatgtggtagt 726
                |||| |||||||| |||||||||||||| |||| ||| || ||||| || ||||||||||
Sbjct: 33336313 cctcaatgtggagcaggtagatgtctgaatccaagatggcattctgcccaatgtggtagt 33336254

                                      
Query: 727      accaccgcggtatgaccttgtc 748
                ||||||| ||||||| ||||||
Sbjct: 33336253 accaccgtggtatgatcttgtc 33336232



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 537      gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
                |||||||||| ||||  ||| |||| ||||||||||||||| ||||||| ||| ||||||
Sbjct: 33349392 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 33349333

                     
Query: 597      ttgtc 601
                |||||
Sbjct: 33349332 ttgtc 33349328



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 537      gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
                |||||||| ||||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 33343165 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33343106

                     
Query: 597      ttgtc 601
                |||||
Sbjct: 33343105 ttgtc 33343101



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                            
Query: 537      gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
                |||||||| | ||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 33336528 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33336469

                                                         
Query: 597      ttgtccgacgacgtcggcacgtacacggctttctgccagtt 637
                ||||| || || || ||||| ||    ||||||||||||||
Sbjct: 33336468 ttgtcagatgatgtgggcacatagcaagctttctgccagtt 33336428



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                            
Query: 539      ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 598
                |||||| |||||| | || |||| |||  |||||||||| ||||||||||| | || |||
Sbjct: 33357544 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 33357485

                                     
Query: 599      gtccgacgacgtcggcacgta 619
                ||| || || || ||||||||
Sbjct: 33357484 gtcagatgatgtgggcacgta 33357464

to top

>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score =  256 bits (129), Expect = 9e-65
 Identities = 228/261 (87%)
 Strand = Plus / Minus

                                                                         
Query: 221   tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
             ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 93498 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 93439

                                                                         
Query: 281   ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
             ||||||||| ||||||||||||||||| |||   | ||||||||||| ||||||||| ||
Sbjct: 93438 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 93379

                                                                         
Query: 341   cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
             |||||| || |  |||||||||||||| || ||||| |||||||| || |||||||| ||
Sbjct: 93378 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 93319

                                                                         
Query: 401   ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
             ||||||||| ||||||||||| |||||  ||||||| ||   |||||||||| |||||||
Sbjct: 93318 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 93259

                                  
Query: 461   cgcgacgtgcgaccagtacct 481
             |  |||||||||||| |||||
Sbjct: 93258 catgacgtgcgaccaatacct 93238



 Score =  184 bits (93), Expect = 3e-43
 Identities = 219/261 (83%)
 Strand = Plus / Minus

                                                                          
Query: 221    tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
              ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct: 106347 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 106288

                                                                          
Query: 281    ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
              ||||||||| ||||||||||||||||| ||    | |||| ||||||||| | | || ||
Sbjct: 106287 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 106228

                                                                          
Query: 341    cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
              |||||   ||||  ||||||||||||| || ||||| |||||||  || |||||||| ||
Sbjct: 106227 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 106168

                                                                          
Query: 401    ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
              ||||||||| ||||||||||| |||||  ||||||| || | |||||||||| |||||||
Sbjct: 106167 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 106108

                                   
Query: 461    cgcgacgtgcgaccagtacct 481
              |  ||| ||||||| ||||||
Sbjct: 106107 catgacatgcgacctgtacct 106087



 Score =  180 bits (91), Expect = 4e-42
 Identities = 202/239 (84%)
 Strand = Plus / Minus

                                                                          
Query: 243    tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 302
              |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 114524 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 114465

                                                                          
Query: 303    agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 362
              |||||||||   | |||||||||||||||||| ||  ||||||| || |  |||||||||
Sbjct: 114464 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 114405

                                                                          
Query: 363    gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 422
               || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| |||
Sbjct: 114404 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 114345

                                                                         
Query: 423    ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 481
               ||||   |||||| || | |||||||||| ||||||||  ||| ||||||||||||||
Sbjct: 114344 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 114286



 Score =  129 bits (65), Expect = 1e-26
 Identities = 216/264 (81%), Gaps = 3/264 (1%)
 Strand = Plus / Minus

                                                                          
Query: 221    tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
              ||||||||| |||||||| || |||||||| |||||| | |||||||||||| |||||||
Sbjct: 100111 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 100052

                                                                          
Query: 281    ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
              ||||||||| || |||||||||||| | |||   | |||||||||||||||||| ||  |
Sbjct: 100051 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 99992

                                                                          
Query: 341    cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 397
              |||||| || |  || ||||||||| || | || ||||| |||||||| || ||||||||
Sbjct: 99991  cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 99932

                                                                          
Query: 398    gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 457
               |||||||| || ||||||| |||  ||||   |||||| || | |||||||||  ||||
Sbjct: 99931  cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 99872

                                      
Query: 458    ctgcgcgacgtgcgaccagtacct 481
              ||||  ||| || |||||||||||
Sbjct: 99871  ctgcatgacatgtgaccagtacct 99848



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 667   cctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccgatgtggtagt 726
             |||| |||||||| |||||||||||||| |||| ||| || ||||| || ||||||||||
Sbjct: 92829 cctcaatgtggagcaggtagatgtctgaatccaagatggcattctgcccaatgtggtagt 92770

                                   
Query: 727   accaccgcggtatgaccttgtc 748
             ||||||| ||||||| ||||||
Sbjct: 92769 accaccgtggtatgatcttgtc 92748



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                          
Query: 537    gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
              |||||||||| ||||  ||| |||| ||||||||||||||| ||||||| ||| ||||||
Sbjct: 105908 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 105849

                   
Query: 597    ttgtc 601
              |||||
Sbjct: 105848 ttgtc 105844



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 537   gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
             |||||||| ||||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 99681 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 99622

                  
Query: 597   ttgtc 601
             |||||
Sbjct: 99621 ttgtc 99617



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                         
Query: 537   gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
             |||||||| | ||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 93044 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 92985

                                                      
Query: 597   ttgtccgacgacgtcggcacgtacacggctttctgccagtt 637
             ||||| || || || ||||| ||    ||||||||||||||
Sbjct: 92984 ttgtcagatgatgtgggcacatagcaagctttctgccagtt 92944



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                          
Query: 539    ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 598
              |||||| |||||| | || |||| |||  |||||||||| ||||||||||| | || |||
Sbjct: 114060 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 114001

                                   
Query: 599    gtccgacgacgtcggcacgta 619
              ||| || || || ||||||||
Sbjct: 114000 gtcagatgatgtgggcacgta 113980

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  256 bits (129), Expect = 9e-65
 Identities = 228/261 (87%)
 Strand = Plus / Minus

                                                                            
Query: 221      tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
                ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 33427492 tcacttgtaagcatggacgtagtcctggaaatagaagttcttctcgatgaagttggcgag 33427433

                                                                            
Query: 281      ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
                ||||||||| ||||||||||||||||| |||   | ||||||||||| ||||||||| ||
Sbjct: 33427432 ccagcgggaggcggcgaagcacagcacggccgcagccacgacggcggatctctgcacaac 33427373

                                                                            
Query: 341      cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
                |||||| || |  |||||||||||||| || ||||| |||||||| || |||||||| ||
Sbjct: 33427372 cgacgtgaccaccgtccccttggcgacggcgaggaacccgacgacggcgaccgacgccac 33427313

                                                                            
Query: 401      ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
                ||||||||| ||||||||||| |||||  ||||||| ||   |||||||||| |||||||
Sbjct: 33427312 ctgcagggcgacctccagcgccttcatcttcttcagtgcaccgctgcagctcgtgcactg 33427253

                                     
Query: 461      cgcgacgtgcgaccagtacct 481
                |  |||||||||||| |||||
Sbjct: 33427252 catgacgtgcgaccaatacct 33427232



 Score =  184 bits (93), Expect = 3e-43
 Identities = 219/261 (83%)
 Strand = Plus / Minus

                                                                            
Query: 221      tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
                ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct: 33440341 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 33440282

                                                                            
Query: 281      ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
                ||||||||| ||||||||||||||||| ||    | |||| ||||||||| | | || ||
Sbjct: 33440281 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 33440222

                                                                            
Query: 341      cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
                |||||   ||||  ||||||||||||| || ||||| |||||||  || |||||||| ||
Sbjct: 33440221 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 33440162

                                                                            
Query: 401      ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
                ||||||||| ||||||||||| |||||  ||||||| || | |||||||||| |||||||
Sbjct: 33440161 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 33440102

                                     
Query: 461      cgcgacgtgcgaccagtacct 481
                |  ||| ||||||| ||||||
Sbjct: 33440101 catgacatgcgacctgtacct 33440081



 Score =  180 bits (91), Expect = 4e-42
 Identities = 202/239 (84%)
 Strand = Plus / Minus

                                                                            
Query: 243      tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 302
                |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 33448518 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 33448459

                                                                            
Query: 303      agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 362
                |||||||||   | |||||||||||||||||| ||  ||||||| || |  |||||||||
Sbjct: 33448458 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 33448399

                                                                            
Query: 363      gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 422
                 || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| |||
Sbjct: 33448398 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 33448339

                                                                           
Query: 423      ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 481
                 ||||   |||||| || | |||||||||| ||||||||  ||| ||||||||||||||
Sbjct: 33448338 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 33448280



 Score =  129 bits (65), Expect = 1e-26
 Identities = 216/264 (81%), Gaps = 3/264 (1%)
 Strand = Plus / Minus

                                                                            
Query: 221      tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
                ||||||||| |||||||| || |||||||| |||||| | |||||||||||| |||||||
Sbjct: 33434105 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 33434046

                                                                            
Query: 281      ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
                ||||||||| || |||||||||||| | |||   | |||||||||||||||||| ||  |
Sbjct: 33434045 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 33433986

                                                                            
Query: 341      cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 397
                |||||| || |  || ||||||||| || | || ||||| |||||||| || ||||||||
Sbjct: 33433985 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 33433926

                                                                            
Query: 398      gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 457
                 |||||||| || ||||||| |||  ||||   |||||| || | |||||||||  ||||
Sbjct: 33433925 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 33433866

                                        
Query: 458      ctgcgcgacgtgcgaccagtacct 481
                ||||  ||| || |||||||||||
Sbjct: 33433865 ctgcatgacatgtgaccagtacct 33433842



 Score =  107 bits (54), Expect = 5e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                            
Query: 231      gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 290
                |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct: 33474033 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 33473974

                          
Query: 291      gcggcgaagc 300
                ||||||||||
Sbjct: 33473973 gcggcgaagc 33473964



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 667      cctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccgatgtggtagt 726
                |||| |||||||| |||||||||||||| |||| ||| || ||||| || ||||||||||
Sbjct: 33426823 cctcaatgtggagcaggtagatgtctgaatccaagatggcattctgcccaatgtggtagt 33426764

                                      
Query: 727      accaccgcggtatgaccttgtc 748
                ||||||| ||||||| ||||||
Sbjct: 33426763 accaccgtggtatgatcttgtc 33426742



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 537      gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
                |||||||||| ||||  ||| |||| ||||||||||||||| ||||||| ||| ||||||
Sbjct: 33439902 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 33439843

                     
Query: 597      ttgtc 601
                |||||
Sbjct: 33439842 ttgtc 33439838



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 537      gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
                |||||||| ||||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 33433675 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33433616

                     
Query: 597      ttgtc 601
                |||||
Sbjct: 33433615 ttgtc 33433611



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                            
Query: 537      gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
                |||||||| | ||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 33427038 gcccagccaatctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 33426979

                                                         
Query: 597      ttgtccgacgacgtcggcacgtacacggctttctgccagtt 637
                ||||| || || || ||||| ||    ||||||||||||||
Sbjct: 33426978 ttgtcagatgatgtgggcacatagcaagctttctgccagtt 33426938



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                            
Query: 539      ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 598
                |||||| |||||| | || |||| |||  |||||||||| ||||||||||| | || |||
Sbjct: 33448054 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 33447995

                                     
Query: 599      gtccgacgacgtcggcacgta 619
                ||| || || || ||||||||
Sbjct: 33447994 gtcagatgatgtgggcacgta 33447974

to top

>ref|XM_470017.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1668

 Score =  198 bits (100), Expect = 2e-47
 Identities = 241/288 (83%)
 Strand = Plus / Minus

                                                                        
Query: 221  tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
            ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct: 1668 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 1609

                                                                        
Query: 281  ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
            ||||||||| ||||||||||||||||| ||    | |||| ||||||||| | | || ||
Sbjct: 1608 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 1549

                                                                        
Query: 341  cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
            |||||   ||||  ||||||||||||| || ||||| |||||||  || |||||||| ||
Sbjct: 1548 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 1489

                                                                        
Query: 401  ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
            ||||||||| ||||||||||| |||||  ||||||| || | |||||||||| |||||||
Sbjct: 1488 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 1429

                                                            
Query: 461  cgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 508
            |  ||| ||||||| ||||||||||| || ||  |||||||| |||||
Sbjct: 1428 catgacatgcgacctgtacctctccaagacctgatctttggtaggagt 1381



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 123/150 (82%)
 Strand = Plus / Minus

                                                                        
Query: 537  gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
            |||||||||| ||||  ||| |||| ||||||||||||||| ||||||| ||| ||||||
Sbjct: 1352 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 1293

                                                                        
Query: 597  ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 656
            ||||| || || || ||||| ||    ||||| |||||||| || | |||  |||  |||
Sbjct: 1292 ttgtcagatgatgtgggcacataacaagctttgtgccagttatcaaggccaaccgtggcg 1233

                                          
Query: 657  aagttgcgctcctcgatgtggaggaggtag 686
            |||||||||||||| || ||||||||||||
Sbjct: 1232 aagttgcgctcctcaatatggaggaggtag 1203

to top

>ref|XM_470014.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1659

 Score =  198 bits (100), Expect = 2e-47
 Identities = 241/288 (83%)
 Strand = Plus / Minus

                                                                        
Query: 221  tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
            ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct: 1659 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 1600

                                                                        
Query: 281  ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
            ||||||||| ||||||||||||||||| ||    | |||| ||||||||| | | || ||
Sbjct: 1599 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 1540

                                                                        
Query: 341  cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
            |||||   ||||  ||||||||||||| || ||||| |||||||  || |||||||| ||
Sbjct: 1539 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 1480

                                                                        
Query: 401  ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
            ||||||||| ||||||||||| |||||  ||||||| || | |||||||||| |||||||
Sbjct: 1479 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 1420

                                                            
Query: 461  cgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 508
            |  ||| ||||||| ||||||||||| || ||  |||||||| |||||
Sbjct: 1419 catgacatgcgacctgtacctctccaagacctgatctttggtaggagt 1372



 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 123/150 (82%)
 Strand = Plus / Minus

                                                                        
Query: 537  gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
            |||||||||| ||||  ||| |||| ||||||||||||||| ||||||| ||| ||||||
Sbjct: 1343 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 1284

                                                                        
Query: 597  ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 656
            ||||| || || || ||||| ||    ||||| |||||||| || | |||  |||  |||
Sbjct: 1283 ttgtcagatgatgtgggcacataacaagctttgtgccagttatcaaggccaaccgtggcg 1224

                                          
Query: 657  aagttgcgctcctcgatgtggaggaggtag 686
            |||||||||||||| || ||||||||||||
Sbjct: 1223 aagttgcgctcctcaatatggaggaggtag 1194

to top

>ref|XM_470018.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score =  186 bits (94), Expect = 7e-44
 Identities = 205/242 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 302
            |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 1556 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 1497

                                                                        
Query: 303  agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 362
            |||||||||   | |||||||||||||||||| ||  ||||||| || |  |||||||||
Sbjct: 1496 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 1437

                                                                        
Query: 363  gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 422
             || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| |||
Sbjct: 1436 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 1377

                                                                        
Query: 423  ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacctc 482
             ||||   |||||| || | |||||||||| ||||||||  ||| |||||||||||||||
Sbjct: 1376 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacctc 1317

              
Query: 483  tc 484
            ||
Sbjct: 1316 tc 1315



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 539  ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 598
            |||||| |||||| | || |||| |||  |||||||||| ||||||||||| | || |||
Sbjct: 1260 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 1201

                                 
Query: 599  gtccgacgacgtcggcacgta 619
            ||| || || || ||||||||
Sbjct: 1200 gtcagatgatgtgggcacgta 1180

to top

>ref|XM_470015.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1566

 Score =  186 bits (94), Expect = 7e-44
 Identities = 205/242 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 302
            |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 1544 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 1485

                                                                        
Query: 303  agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 362
            |||||||||   | |||||||||||||||||| ||  ||||||| || |  |||||||||
Sbjct: 1484 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 1425

                                                                        
Query: 363  gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 422
             || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| |||
Sbjct: 1424 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 1365

                                                                        
Query: 423  ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacctc 482
             ||||   |||||| || | |||||||||| ||||||||  ||| |||||||||||||||
Sbjct: 1364 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacctc 1305

              
Query: 483  tc 484
            ||
Sbjct: 1304 tc 1303



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 539  ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 598
            |||||| |||||| | || |||| |||  |||||||||| ||||||||||| | || |||
Sbjct: 1248 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 1189

                                 
Query: 599  gtccgacgacgtcggcacgta 619
            ||| || || || ||||||||
Sbjct: 1188 gtcagatgatgtgggcacgta 1168

to top

>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
              sequence
          Length = 154555

 Score =  184 bits (93), Expect = 3e-43
 Identities = 219/261 (83%)
 Strand = Plus / Plus

                                                                          
Query: 221    tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
              ||||||||| ||||||||||| |||||||| |||||| ||||||| |||||||| |||||
Sbjct: 148280 tcacttgtaagcatggacgtagtcctggaagtagaagctcttctcaatgaagctcgcgag 148339

                                                                          
Query: 281    ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
              ||||||||| ||||||||||||||||| ||    | |||| ||||||||| | | || ||
Sbjct: 148340 ccagcgggaggcggcgaagcacagcacggcggtagacacggcggcggctcgccggacaac 148399

                                                                          
Query: 341    cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
              |||||   ||||  ||||||||||||| || ||||| |||||||  || |||||||| ||
Sbjct: 148400 cgacggtgctagactccccttggcgacggcgaggaatccgacgatggcgaccgacgccac 148459

                                                                          
Query: 401    ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
              ||||||||| ||||||||||| |||||  ||||||| || | |||||||||| |||||||
Sbjct: 148460 ctgcagggcgacctccagcgccttcatcttcttcagtgcagcgctgcagctcgtgcactg 148519

                                   
Query: 461    cgcgacgtgcgaccagtacct 481
              |  ||| ||||||| ||||||
Sbjct: 148520 catgacatgcgacctgtacct 148540



 Score =  180 bits (91), Expect = 4e-42
 Identities = 202/239 (84%)
 Strand = Plus / Plus

                                                                          
Query: 243    tcctggaaatagaagttcttctcgatgaagctggcgagccagcgggacgcggcgaagcac 302
              |||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 140103 tcctcgaaatagaaggtcttctcgatgaagccggcgagccagcgggaggcggcgaagcac 140162

                                                                          
Query: 303    agcaccgccaatgtcacgacggcggctctctgcacgaccgacgtcactagtgtccccttg 362
              |||||||||   | |||||||||||||||||| ||  ||||||| || |  |||||||||
Sbjct: 140163 agcaccgccgcagccacgacggcggctctctgaacacccgacgtgaccaccgtccccttg 140222

                                                                          
Query: 363    gcgaccgcaaggaaaccgacgaccgccaccgacgcgacctgcagggcaacctccagcgct 422
               || | || ||||| |||||||| || ||||| || ||||||||||| |||||||| |||
Sbjct: 140223 ccggcggcgaggaacccgacgacggcgaccgaagccacctgcagggcgacctccagagct 140282

                                                                         
Query: 423    ttcatggtcttcagcgccgtgctgcagctcctgcactgcgcgacgtgcgaccagtacct 481
               ||||   |||||| || | |||||||||| ||||||||  ||| ||||||||||||||
Sbjct: 140283 ctcatccacttcagtgcagcgctgcagctcgtgcactgcatgacatgcgaccagtacct 140341



 Score =  107 bits (54), Expect = 5e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                          
Query: 231    gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 290
              |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct: 114588 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 114647

                        
Query: 291    gcggcgaagc 300
              ||||||||||
Sbjct: 114648 gcggcgaagc 114657



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                          
Query: 537    gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
              |||||||||| ||||  ||| |||| ||||||||||||||| ||||||| ||| ||||||
Sbjct: 148719 gcccagccgatctgatgcttacagtactttctgaaccagtttctgaaggtgatgaccatg 148778

                   
Query: 597    ttgtc 601
              |||||
Sbjct: 148779 ttgtc 148783



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                          
Query: 539    ccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatgtt 598
              |||||| |||||| | || |||| |||  |||||||||| ||||||||||| | || |||
Sbjct: 140567 ccagccaacctgattgttacagtacttcttgaaccagtttctgaaggcgatgatcaagtt 140626

                                   
Query: 599    gtccgacgacgtcggcacgta 619
              ||| || || || ||||||||
Sbjct: 140627 gtcagatgatgtgggcacgta 140647

to top

>ref|XM_470013.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score =  159 bits (80), Expect = 2e-35
 Identities = 240/291 (82%), Gaps = 3/291 (1%)
 Strand = Plus / Minus

                                                                        
Query: 221  tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
            ||||||||| |||||||| || |||||||| |||||| | |||||||||||| |||||||
Sbjct: 1584 tcacttgtaagcatggacatagtcctggaagtagaagcttttctcgatgaagttggcgag 1525

                                                                        
Query: 281  ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
            ||||||||| || |||||||||||| | |||   | |||||||||||||||||| ||  |
Sbjct: 1524 ccagcgggaggcagcgaagcacagcgcggccgcagccacgacggcggctctctgaaccgc 1465

                                                                        
Query: 341  cgacgtcacta--gt-gtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgc 397
            |||||| || |  || ||||||||| || | || ||||| |||||||| || ||||||||
Sbjct: 1464 cgacgtgaccaccgtcgtccccttgccggcggcgaggaacccgacgacggcgaccgacgc 1405

                                                                        
Query: 398  gacctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgca 457
             |||||||| || ||||||| |||  ||||   |||||| || | |||||||||  ||||
Sbjct: 1404 cacctgcagtgcgacctccatcgccctcatccacttcagtgcagcgctgcagctggtgca 1345

                                                               
Query: 458  ctgcgcgacgtgcgaccagtacctctccatgagcttgtctttggttggagt 508
            ||||  ||| || ||||||||||||||||||||||  |||||||| |||||
Sbjct: 1344 ctgcatgacatgtgaccagtacctctccatgagctgatctttggtaggagt 1294



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 122/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 537  gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
            |||||||| ||||||  |||||||| ||||||||||||||| ||||||| ||| | ||||
Sbjct: 1265 gcccagccaacctgatgcttgcagtactttctgaaccagtttctgaaggtgatgatcatg 1206

                                                                        
Query: 597  ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 656
            ||||| ||  | || || || ||    ||||||||||| || || |||||  |||| |||
Sbjct: 1205 ttgtcagataaagtgggaacatagcaagctttctgccatttatcaacgccaaccgccgcg 1146

                                         
Query: 657  aagttgcgctcctcgatgtggaggaggta 685
            || |||||||||||||| |||||||||||
Sbjct: 1145 aaattgcgctcctcgatatggaggaggta 1117

to top

>gb|AY109924.1| Zea mays CL64795_1 mRNA sequence
          Length = 748

 Score =  159 bits (80), Expect = 2e-35
 Identities = 231/282 (81%)
 Strand = Plus / Minus

                                                                       
Query: 221 tcacttgtaggcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgag 280
           |||||||||||| |||| |||  | || || |||||| || ||| ||||||| |||| ||
Sbjct: 540 tcacttgtaggcgtggatgtagncttgaaagtagaagntcatctggatgaagttggcaag 481

                                                                       
Query: 281 ccagcgggacgcggcgaagcacagcaccgccaatgtcacgacggcggctctctgcacgac 340
           ||| ||||| || |||||||||||||| |||   | |||||| ||||| ||||| ||   
Sbjct: 480 ccaacgggaggcagcgaagcacagcacggccgccgacacgactgcggccctctgaacagt 421

                                                                       
Query: 341 cgacgtcactagtgtccccttggcgaccgcaaggaaaccgacgaccgccaccgacgcgac 400
            ||||| |  |  || ||||| ||||| |||||||| |||||||| || ||||| || ||
Sbjct: 420 tgacgtgaggaccgttcccttagcgacggcaaggaacccgacgacggcgaccgaggccac 361

                                                                       
Query: 401 ctgcagggcaacctccagcgctttcatggtcttcagcgccgtgctgcagctcctgcactg 460
           |||||||||| |||| ||||| ||||||||||| ||||||| | ||||||||||||||||
Sbjct: 360 ctgcagggcagcctcgagcgccttcatggtcttgagcgccgcgttgcagctcctgcactg 301

                                                     
Query: 461 cgcgacgtgcgaccagtacctctccatgagcttgtctttggt 502
           | | ||||||||||| |||||||||||||||| ||| |||||
Sbjct: 300 caccacgtgcgaccaatacctctccatgagctggtccttggt 259



 Score =  135 bits (68), Expect = 2e-28
 Identities = 158/188 (84%)
 Strand = Plus / Minus

                                                                       
Query: 537 gcccagccgacctgactcttgcagtgctttctgaaccagttcctgaaggcgatcaccatg 596
           ||||||||||||||  ||||||||   ||||||||||||||||||||||||| |||||||
Sbjct: 224 gcccagccgacctggttcttgcagaattttctgaaccagttcctgaaggcgaccaccatg 165

                                                                       
Query: 597 ttgtccgacgacgtcggcacgtacacggctttctgccagttttcgacgcccgccgcagcg 656
             ||||||||||||||||||||||   ||| |||||||||| || |  || |||||||| 
Sbjct: 164 gcgtccgacgacgtcggcacgtaccaagctctctgccagttatccagccctgccgcagca 105

                                                                       
Query: 657 aagttgcgctcctcgatgtggaggaggtagatgtctgagtccaggatagcgttctggccg 716
           || || |||||||| | |||||||||| | |||||||| ||||  |||  ||||||||||
Sbjct: 104 aatttacgctcctcaacgtggaggaggaaaatgtctgaatccaatataaggttctggccg 45

                   
Query: 717 atgtggta 724
           | ||||||
Sbjct: 44  acgtggta 37

to top

>ref|XM_470021.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1536

 Score =  107 bits (54), Expect = 5e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                        
Query: 231  gcatggacgtaatcctggaaatagaagttcttctcgatgaagctggcgagccagcgggac 290
            |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct: 1246 gcatggacataatcctggaaatagaaggtcttctcgatgaagttggcgagccagcgggag 1187

                      
Query: 291  gcggcgaagc 300
            ||||||||||
Sbjct: 1186 gcggcgaagc 1177

to top

>ref|XM_960207.1| Neurospora crassa OR74A hypothetical protein (NCU03200.1) partial
            mRNA
          Length = 2736

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 254  gaagttcttctcgatgaagctgg 276
            |||||||||||||||||||||||
Sbjct: 2029 gaagttcttctcgatgaagctgg 2051

to top

>ref|XM_330635.1| Neurospora crassa OR74A hypothetical protein (NCU03200.1) partial
            mRNA
          Length = 2736

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 254  gaagttcttctcgatgaagctgg 276
            |||||||||||||||||||||||
Sbjct: 2029 gaagttcttctcgatgaagctgg 2051

to top

>gb|AC025775.6| Homo sapiens chromosome 5 clone CTD-2299B9, complete sequence
          Length = 95782

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 672   atgtggaggaggtagatgtctg 693
             ||||||||||||||||||||||
Sbjct: 21962 atgtggaggaggtagatgtctg 21983

to top

>emb|BX950251.1| Gallus gallus finished cDNA, clone ChEST706m10
          Length = 1244

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 438 gccgtgctgcagctcctgcactgcgc 463
           |||||||||||||||| |||||||||
Sbjct: 77  gccgtgctgcagctccagcactgcgc 102

to top

>gb|AC026709.7| Homo sapiens chromosome 5 clone CTD-2084I18, complete sequence
          Length = 139402

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 672  atgtggaggaggtagatgtctg 693
            ||||||||||||||||||||||
Sbjct: 4601 atgtggaggaggtagatgtctg 4580

to top

>gb|AY023913.1| Oryza sativa microsatellite MRG6238 containing (ATAG)X20, closest
           to marker R707, genomic sequence
          Length = 280

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 221 tcacttgtaggcatggacgtaatcctgga 249
           ||||||||| ||||||||||| |||||||
Sbjct: 252 tcacttgtaagcatggacgtagtcctgga 280

to top

>gb|AY023910.1| Oryza sativa microsatellite MRG6235 containing (ATAG)X17, closest
           to marker R707, genomic sequence
          Length = 268

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 221 tcacttgtaggcatggacgtaatcctgga 249
           ||||||||| ||||||||||| |||||||
Sbjct: 240 tcacttgtaagcatggacgtagtcctgga 268

to top

>gb|AC007865.8| Trypanosoma brucei chromosome 2 clone RPCI93-30M24, complete sequence
          Length = 148533

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 456   cactgcgcgacgtgcgaccag 476
             |||||||||||||||||||||
Sbjct: 31132 cactgcgcgacgtgcgaccag 31152

to top

>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 456    cactgcgcgacgtgcgaccag 476
              |||||||||||||||||||||
Sbjct: 880110 cactgcgcgacgtgcgaccag 880090

to top

>ref|XM_946581.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.4980)
           partial mRNA
          Length = 840

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 456 cactgcgcgacgtgcgaccag 476
           |||||||||||||||||||||
Sbjct: 278 cactgcgcgacgtgcgaccag 298

to top

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 431     cttcagcgccgtgctgcagct 451
               |||||||||||||||||||||
Sbjct: 1957778 cttcagcgccgtgctgcagct 1957798

to top

>gb|AC132336.3| Mus musculus BAC clone RP24-230N9 from chromosome 12, complete sequence
          Length = 149020

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    ctggtttgaatgaaaatcgga 64
             |||||||||||||||||||||
Sbjct: 47371 ctggtttgaatgaaaatcgga 47351

to top

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 264     tcgatgaagctggcgagccag 284
               |||||||||||||||||||||
Sbjct: 1293006 tcgatgaagctggcgagccag 1293026

to top

>gb|AC105934.3| Homo sapiens chromosome 3 clone RP11-620K19, complete sequence
          Length = 217029

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 76     gtttgaaaagagaaaaaagactagt 100
              |||||||||||||||||||| ||||
Sbjct: 202554 gtttgaaaagagaaaaaagaatagt 202530

to top

>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2
              Contains a novel gene, the 5' end of the PLAC3 gene for
              placenta-specific 3 (PLAC3) and a protein tyrosine
              phosphatase type IVA (member 1) (PTP4A1) pseudogene,
              complete sequence
          Length = 168835

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 679    ggaggtagatgtctgagtcca 699
              |||||||||||||||||||||
Sbjct: 166273 ggaggtagatgtctgagtcca 166293

to top

>gb|AC104446.2| Homo sapiens chromosome 3 clone RP11-447A21, complete sequence
          Length = 186734

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 76     gtttgaaaagagaaaaaagactagt 100
              |||||||||||||||||||| ||||
Sbjct: 113774 gtttgaaaagagaaaaaagaatagt 113750

to top

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 399    acctgcagggcaacctccagc 419
              |||||||||||||||||||||
Sbjct: 560925 acctgcagggcaacctccagc 560905

to top

>emb|CT030196.9| Mouse DNA sequence from clone RP23-282B14 on chromosome 12, complete
            sequence
          Length = 215752

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 44   ctggtttgaatgaaaatcgga 64
            |||||||||||||||||||||
Sbjct: 6599 ctggtttgaatgaaaatcgga 6619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,405,324
Number of Sequences: 3902068
Number of extensions: 6405324
Number of successful extensions: 132074
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131723
Number of HSP's gapped (non-prelim): 345
length of query: 753
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 730
effective length of database: 17,143,297,704
effective search space: 12514607323920
effective search space used: 12514607323920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result