ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19j06 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 33.1 bits (74), Expect = 0.78 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 479 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 375 ++V++ F LG++M +G AG PAGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETG 246
>FRIZ2_DROME (Q9VVX3) Protein frizzled-2 precursor (dFz2)| Length = 694 Score = 32.7 bits (73), Expect = 1.0 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = -2 Query: 555 EAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNG 376 EA S G S GSG + + G+G G S G+S + RG N+ +N Sbjct: 185 EAGSGGSSGGSGGSGSGSGSGGKRKQGGSGSGGSG-AGGSSGSTSTKPCRGRNSKNCQNP 243 Query: 375 QKQKLSSK 352 Q +K S K Sbjct: 244 QGEKASGK 251
>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC| 3.4.23.-)] Length = 811 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = -2 Query: 537 GINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLS 358 G+N RG S S P G G GQ+ TS Q P G R +GQ + S Sbjct: 468 GLNARGQSIRASVTPQPRPSRGRGRGQN-----TSRPSQGPANSGRGRQRPASGQSNRGS 522 Query: 357 SKHDVSSED 331 S + + ++ Sbjct: 523 STQNQNQDN 531
>ZN335_HUMAN (Q9H4Z2) Zinc finger protein 335| Length = 1342 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Frame = -2 Query: 540 NGINKRGSSAMGSGKPPRAAEAGAGYGQSE-FCFGTSDAKQAPRARGGNTSRRRNGQKQK 364 N + +A G G+P +E+G G G SE +SDA AP + S + Sbjct: 4 NEVESSSDAAPGPGRPEEPSESGLGVGTSEAVSADSSDAAAAPGQAEADDSGVGQSSDRG 63 Query: 363 LSSKHDVSSEDEMLSP 316 S+ +VS P Sbjct: 64 SRSQEEVSESSSSADP 79
>VLPB_MYCHR (P29229) Variant surface antigen B precursor (VLPB prolipoprotein)| Length = 174 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/69 (28%), Positives = 25/69 (36%) Frame = -2 Query: 552 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQ 373 A SC N S GSG ++G G G G S R+ G++S GQ Sbjct: 27 AISCGQTNTDKSQQPGSGSSTSGGQSGTGLGSGTTTGGQSGTTTGGRSGSGSSSSTTGGQ 86 Query: 372 KQKLSSKHD 346 S D Sbjct: 87 TGTGSDSQD 95
>ALG10_EMENI (Q5B0M8) Alpha-1,2 glucosyltransferase alg10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase alg10) (Dolichyl-phosphoglucose-dependent glucosyltransferase alg10) (Asparagine-linked glycosylation protein 10) Length = 608 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +2 Query: 116 SHTLGSLTNLLRGAYIAFDEASPLVTASGAGALSAAVRYRVTIDMVRT*GDKGPDGCIEG 295 S+ + +L LLRG+ D + T + A A+ +R + +D VR + P G Sbjct: 74 SYAVCALILLLRGSPEHLDPPALRATNAAAAAVLLPLRLQTALDTVRKQRNTRPSGAWLS 133 Query: 296 HTTLGCC 316 HT L C Sbjct: 134 HTVLNIC 140
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 479 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 375 ++V++ F LG++M +G G PAGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETG 246
>LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (Protein Muf1)| Length = 843 Score = 31.6 bits (70), Expect = 2.3 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 3/116 (2%) Frame = -2 Query: 522 GSSAMGSGKPPR-AAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLSSKHD 346 GS +GS +P R AAE A + S+AKQ PRA RR+ Q+ + D Sbjct: 258 GSLLLGSRRPRRDAAERCAAALMASR--RKSEAKQMPRAAPATRVTRRSTQESLTAGGTD 315 Query: 345 VSSEDEMLSPQQPRVV*PSMQ--PSGPLSPYVLTMSMVTRYRTAADRAPAPEAVTR 184 + E L P P + PS P + + S + R A AP P+ + R Sbjct: 316 LKRE---LHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKR 368
>GLPK_MYCLE (Q9CB81) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 508 Score = 31.2 bits (69), Expect = 3.0 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Frame = -2 Query: 474 GAGYGQSEFCFGTSDAKQAPRARGG-----NTSRRRNGQKQKLSSKHDVSSEDEMLSPQQ 310 GA E FGT D GG + + N + L + +DE+LS Sbjct: 154 GAAAENGEALFGTPDTWLLWNLTGGPRGGVHVTDVTNASRTMLMDLEKLDWDDELLSFFS 213 Query: 309 -PRVV*PSMQPSGPLSPYVLTMS 244 PR + P++ S PL PY +T++ Sbjct: 214 IPRAMLPAIASSSPLQPYGVTLA 236
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 30.8 bits (68), Expect = 3.9 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 479 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 375 ++V++ F LG++M +G +G P+GDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETG 246
>AMPH_HUMAN (P49418) Amphiphysin| Length = 695 Score = 30.8 bits (68), Expect = 3.9 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 8/113 (7%) Frame = -2 Query: 477 AGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKL--------SSKHDVSSEDEML 322 AG G E GT + A A+ ++K+ +S H+ E+E+ Sbjct: 501 AGEGVSLEEAKIGTETTEGAESAQPEAEELEATVPQEKVIPSVVIEPASNHEEEGENEIT 560 Query: 321 SPQQPRVV*PSMQPSGPLSPYVLTMSMVTRYRTAADRAPAPEAVTRGDASSKA 163 +P+ P GP S T + T + D P P A G A A Sbjct: 561 IGAEPKETTEDAAPPGPTSE---TPELATEQKPIQDPQPTPSAPAMGAADQLA 610
>SPN90_MOUSE (Q9ESJ4) SH3 adapter protein SPIN90 (NCK-interacting protein with| SH3 domain) (SH3 protein interacting with Nck, 90 kDa) (VacA-interacting protein, 54 kDa) (VIP54) (N-WASP-interacting protein, 90kDa) (Wiskott-Aldrich syndrome protein-binding Length = 714 Score = 30.8 bits (68), Expect = 3.9 Identities = 19/73 (26%), Positives = 32/73 (43%) Frame = -2 Query: 405 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTMSMVTRYR 226 GG T+ G S +S D + + P + PS P+ P P + V++ + Sbjct: 193 GGRTAIPSGGSSVSSGSSASSTSMDTLYTGSSPSELGPSCSPTPPPVPRRGAHTTVSQPQ 252 Query: 225 TAADRAPAPEAVT 187 + +AP+PE T Sbjct: 253 PSPSKAPSPEPPT 265
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 30.4 bits (67), Expect = 5.1 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Frame = -2 Query: 663 NGPAKGHHDPFQRQT----QTFSTXXXXXXXXXXPLATEAEAASCNGINKRGSSAMGSGK 496 +G A GH R Q+ S+ + E+AS + + RG GSG+ Sbjct: 831 HGSASGHFSSQGRHGSTSGQSSSSGQHDSSSGQSSSYGQHESASHHA-SGRGRHGSGSGQ 889 Query: 495 PPRAAEAGAGYGQSEFC--FGTSDAKQAPRARGGNTSRRRNGQKQKLSS 355 P + G+G GQS G+ + + R G+ S + +G K SS Sbjct: 890 SPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSS 938
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 30.0 bits (66), Expect = 6.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 479 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 375 ++V++ F LG++M +G AG P+GDE G Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAG 246
>DVL3_MOUSE (Q61062) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 30.0 bits (66), Expect = 6.6 Identities = 29/108 (26%), Positives = 46/108 (42%) Frame = -2 Query: 558 AEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRN 379 +E + +G N+ GS K P+A ++ +G SE T + + PR R + R+ Sbjct: 570 SEGSRSSGSNRSGSDRRKE-KDPKAGDSKSGGSGSESDHTTRSSLRGPRERAPS---ERS 625 Query: 378 GQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTMSMVT 235 G +S+H S + S + PS P G Y M M+T Sbjct: 626 G---PAASEHSHRSHHSLTSSLRSHHTHPSYGPPGVPPLYGPPMLMMT 670
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -2 Query: 552 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSR 388 AA C G+ K+ S+ PP + G G S C G S + GG +R Sbjct: 2 AAGCCGVKKQKLSS----SPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTR 52
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.0 bits (66), Expect = 6.6 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = -2 Query: 564 TEAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRAR--GGNTS 391 ++ + C + G + GSG + + G+ Y QS +GT ++ +P +R GG+ S Sbjct: 831 SQQHGSCCGQSSGYGQNEYGSGHSASSGQQGSHYSQSS-SYGTHNSGGSPSSRPAGGHGS 889 Query: 390 R--RRNGQKQKLSSKHDVSSEDEMLSPQ 313 R R +G Q S SS S Q Sbjct: 890 RSGRSSGLGQYGSPSGQTSSSTRQGSGQ 917
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -2 Query: 552 AASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSR 388 AA C G+ K+ S+ PP + G G S C G S + GG +R Sbjct: 2 AAGCCGVKKQKLSS----SPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTR 52
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 29.6 bits (65), Expect = 8.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 479 KRVRVTASLSFVLGRVMPSKRQGREAGTPAGDETG 375 ++V++ F LG++M +G +G AGDETG Sbjct: 212 RKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETG 246
>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 699 Score = 29.6 bits (65), Expect = 8.7 Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 25/182 (13%) Frame = -2 Query: 561 EAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAK-------------- 424 E E S + + K+ G P + A A G +S + D+ Sbjct: 481 EEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPR 540 Query: 423 -QAPRARGGNTSRRRNGQKQKLSSKHDVSSEDEMLSPQQPRVV*PSMQPSGPLSPYVLTM 247 QAP+A G + +NG+ K +SE+E ++ VV + SG L Sbjct: 541 PQAPKANGTSALTAQNGKAAK-------NSEEEEEEKKKAAVV---VSKSGSLKK----- 585 Query: 246 SMVTRYRTAADRAPAPEA----------VTRGDASSKAM*APLRRFVREPSV*DSSMLPH 97 + AA A P+A + K +P RR E DS + + Sbjct: 586 ---RKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADN 642 Query: 96 SF 91 SF Sbjct: 643 SF 644
>VCX1_HUMAN (Q9H320) Variable charge X-linked protein 1 (VCX-B1 protein)| (Variably charged protein X-B1) (Variable charge protein on X with ten repeats) (VCX-10r) Length = 206 Score = 29.6 bits (65), Expect = 8.7 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = -2 Query: 504 SGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRR-RNGQKQKLSSKHDVSSEDE 328 SG P +A EAG S+ K A+ G RR R G+K + V++ + Sbjct: 8 SGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMAAVTAPEA 67 Query: 327 MLSPQQPRVV*PSMQPSGPLSPYVL 253 +P P PS QPS L + L Sbjct: 68 ESAPAAPG---PSDQPSQELPQHEL 89
>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 737 Score = 29.6 bits (65), Expect = 8.7 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 405 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 316 GG T + + G+K+K+ SK + SS+ E P Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 29.6 bits (65), Expect = 8.7 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Frame = -2 Query: 372 KQKLSSKHDVSSEDEMLSPQQP-------RVV*PSMQPSGPLSPYVLTMSMVTRYRTAAD 214 K+ SSK P QP +V+ P PSGP P + S + ++A Sbjct: 442 KEPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPSGPSLPSSSSSSSSSSSSSSAP 501 Query: 213 RAPAPEAVTRGDASSKA 163 + P T GDASS + Sbjct: 502 QRPGGPTTTHGDASSSS 518
>RCC2_HUMAN (Q9P258) Protein RCC2 (Telophase disk protein of 60 kDa) (RCC1-like| protein TD-60) Length = 522 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = -2 Query: 492 PRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRRNGQKQKLSSKHDVSSEDE 328 PR A A + E G A+ PR RGG R+R ++ SS SS DE Sbjct: 2 PRKKAAAAAW--EEPSSGNGTARAGPRKRGGPAGRKRERPERCSSSSGGGSSGDE 54
>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 727 Score = 29.6 bits (65), Expect = 8.7 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 405 GGNTSRRRNGQKQKLSSKHDVSSEDEMLSP 316 GG T + + G+K+K+ SK + SS+ E P Sbjct: 588 GGETKKSKRGRKRKMRSKKEDSSDSENAEP 617
>VE2_HPV04 (Q07849) Regulatory protein E2| Length = 402 Score = 29.6 bits (65), Expect = 8.7 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = -2 Query: 561 EAEAASCNGINKRGSSAMGSGKPPRAAEAGAGYGQSEFCFGTSDAKQAPRARGGNTSRRR 382 E E + G S GSG+ PR G G G E G++ +P G SR R Sbjct: 249 ETEGVRLRRRRREGKSGPGSGETPRKRRRGGGRGGGETELGSA---PSPAEVG---SRHR 302 Query: 381 NGQKQKLS 358 ++Q LS Sbjct: 303 QVERQGLS 310 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,418,855 Number of Sequences: 219361 Number of extensions: 1609229 Number of successful extensions: 5143 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5129 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
