ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19j04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550612.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
2gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete se... 88 2e-14
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
6dbj|AK119542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7dbj|AK105053.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
8dbj|AK067452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
9gb|BT016698.1| Zea mays clone Contig531 mRNA sequence 82 1e-12
10gb|AY148193.1| Synthetic construct thioredoxin/transketolase fus... 82 1e-12
11emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen all... 44 0.31
12emb|AL356796.16| Human DNA sequence from clone RP11-82I1 on chro... 44 0.31
13gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 1.2
14gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.2
15gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 4.9
16ref|XM_784712.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.9
17emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 4.9
18gb|AC126122.2| Homo sapiens chromosome 3 clone RP11-751K5, compl... 40 4.9
19gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, compl... 40 4.9
20gb|AC010621.7| Homo sapiens chromosome 5 clone CTD-2034J20, comp... 40 4.9
21gb|AF400075.1|AF400075 Homo sapiens coagulation factor II (throm... 40 4.9
22gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 4.9
23dbj|AK110336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
24emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-6... 40 4.9
25gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, compl... 40 4.9 
>ref|XM_550612.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2281

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 83   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 2212 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 2155

                                                                  
Query: 143  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 2154 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 2105



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 254  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 2041 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1982

                                                     
Query: 314  atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
            |||||    |||||||| || || ||||| |||||||||||
Sbjct: 1981 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 1941
to top
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence
          Length = 136866

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                          
Query: 83     aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
              |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 128322 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 128379

                                                                    
Query: 143    caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
              ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 128380 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 128429



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                          
Query: 254    tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
              |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 128493 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 128552

                                                       
Query: 314    atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
              |||||    |||||||| || || ||||| |||||||||||
Sbjct: 128553 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 128593
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                           
Query: 83      aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
               |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 1808030 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 1808087

                                                                     
Query: 143     caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
               ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 1808088 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 1808137



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                           
Query: 254     tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
               |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 1808201 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1808260

                                                        
Query: 314     atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
               |||||    |||||||| || || ||||| |||||||||||
Sbjct: 1808261 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 1808301
to top
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0001H02
          Length = 147160

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                        
Query: 83   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 8508 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 8565

                                                                  
Query: 143  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 8566 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 8615



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                        
Query: 254  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 8679 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 8738

                                                     
Query: 314  atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
            |||||    |||||||| || || ||||| |||||||||||
Sbjct: 8739 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 8779
to top
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0679C08
          Length = 156266

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Plus

                                                                          
Query: 83     aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
              |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 133179 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 133236

                                                                    
Query: 143    caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
              ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 133237 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 133286



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                          
Query: 254    tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
              |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 133350 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 133409

                                                       
Query: 314    atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
              |||||    |||||||| || || ||||| |||||||||||
Sbjct: 133410 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 133450
to top
>dbj|AK119542.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D07, full
            insert sequence
          Length = 1104

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 83   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 1055 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 998

                                                                  
Query: 143  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 997  caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 948



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 254 tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
           |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 884 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 825

                                                    
Query: 314 atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
           |||||    |||||||| || || ||||| |||||||||||
Sbjct: 824 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 784
to top
>dbj|AK105053.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E06, full
            insert sequence
          Length = 2001

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 83   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 1890 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 1833

                                                                  
Query: 143  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 1832 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 1783



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 254  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 1719 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1660

                                                     
Query: 314  atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
            |||||    |||||||| || || ||||| |||||||||||
Sbjct: 1659 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 1619
to top
>dbj|AK067452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107D17, full
            insert sequence
          Length = 2280

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 100/114 (87%), Gaps = 6/114 (5%)
 Strand = Plus / Minus

                                                                        
Query: 83   aacgcaaatggaaaaggcattgtttattacaggcctagaaataccactcacgctccgacg 142
            |||| ||||||||||| || || |||||||||||||| |||||||||||||||||| | |
Sbjct: 2211 aacgtaaatggaaaag-cagtgcttattacaggccta-aaataccactcacgctccaatg 2154

                                                                  
Query: 143  caggcatcctcctctccctccgttattccaagctttctgggcacgagaccttca 196
            ||||||||  ||||||||| | |||||||||||||  ||||||| |||||||||
Sbjct: 2153 caggcatc--cctctcccttcattattccaagctt--tgggcacaagaccttca 2104



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                        
Query: 254  tcttacaggctcttggctgcggcgatgacgttctctgcagtgatgccgtactccttgtag 313
            |||||||||||||| ||||  |||||||||||||| || |||||||| ||||||| ||||
Sbjct: 2040 tcttacaggctctttgctgttgcgatgacgttctccgcggtgatgccatactcctggtag 1981

                                                     
Query: 314  atcttgggggcaggagcgctggcgccgaacttgtcgatgcc 354
            |||||    |||||||| || || ||||| |||||||||||
Sbjct: 1980 atctttccagcaggagcacttgcaccgaatttgtcgatgcc 1940
to top
>gb|BT016698.1| Zea mays clone Contig531 mRNA sequence
          Length = 1691

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                        
Query: 293  gtgatgccgtactccttgtagatcttgggggcaggagcgctggcgccgaacttgtcgatg 352
            |||||||||||||||||||||||| |   ||||||||| || ||||||||||||||||||
Sbjct: 1195 gtgatgccgtactccttgtagatcgtcccggcaggagcactcgcgccgaacttgtcgatg 1136

                         
Query: 353  ccgatggtcttgc 365
            || |||| |||||
Sbjct: 1135 ccaatggccttgc 1123



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 45/47 (95%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 81   acaacgcaaatggaaaa-ggcattgtttattacaggcctagaaatac 126
            |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1427 acaacgtaaatggaaaaaggcattgtttattacaggcctagaaatac 1381
to top
>gb|AY148193.1| Synthetic construct thioredoxin/transketolase fusion protein gene,
            complete cds
          Length = 2415

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                        
Query: 293  gtgatgccgtactccttgtagatcttgggggcaggagcgctggcgccgaacttgtcgatg 352
            |||||||||||||||||||||||| |   ||||||||| || ||||||||||||||||||
Sbjct: 2378 gtgatgccgtactccttgtagatcgtcccggcaggagcactcgcgccgaacttgtcgatg 2319

                         
Query: 353  ccgatggtcttgc 365
            || |||| |||||
Sbjct: 2318 ccaatggccttgc 2306
to top
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4
          Length = 1272

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 276 cgatgacgttctctgcagtgatgccgtact 305
           |||||||||||||||| | |||||||||||
Sbjct: 338 cgatgacgttctctgcggcgatgccgtact 309
to top
>emb|AL356796.16| Human DNA sequence from clone RP11-82I1 on chromosome 9 Contains the 3'
             end of a novel gene (FLJ11985, MGC11337) (KIAA0870), the
             ORM1 gene for orosomucoid 1 (AGP1, AGP-A), the ORM2 gene
             for orosomucoid 2 (AGP2, AGP-B) and the gene for AT-hook
             transcription factor AKNA, complete sequence
          Length = 125673

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 249   gctggtcttacaggctcttggctgcg 274
             |||||||||||||| |||||||||||
Sbjct: 39266 gctggtcttacaggttcttggctgcg 39241
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    ctctgcagtgatgccgtactc 306
              |||||||||||||||||||||
Sbjct: 330738 ctctgcagtgatgccgtactc 330758
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 335     gcgccgaacttgtcgatgccgatgg 359
               ||||||||| |||||||||||||||
Sbjct: 2085843 gcgccgaacgtgtcgatgccgatgg 2085867
to top
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 274    ggcgatgacgttctctgcagtgatgccg 301
              ||||||||||| ||| ||||||||||||
Sbjct: 119991 ggcgatgacgtactcagcagtgatgccg 120018
to top
>ref|XM_784712.1| PREDICTED: Strongylocentrotus purpuratus similar to DEAD
           (Asp-Glu-Ala-Asp) box polypeptide 23 (LOC584867),
           partial mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 catcctcctctccctccgtt 166
           ||||||||||||||||||||
Sbjct: 585 catcctcctctccctccgtt 566
to top
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 94      aaaaggcattgtttattacaggcc 117
               |||||||||||||||| |||||||
Sbjct: 1831511 aaaaggcattgtttataacaggcc 1831488
to top
>gb|AC126122.2| Homo sapiens chromosome 3 clone RP11-751K5, complete sequence
          Length = 3917

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  ttccaagctttctgggcacg 187
            ||||||||||||||||||||
Sbjct: 2973 ttccaagctttctgggcacg 2954
to top
>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence
          Length = 192063

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ttccaagctttctgggcacg 187
           ||||||||||||||||||||
Sbjct: 830 ttccaagctttctgggcacg 811
to top
>gb|AC010621.7| Homo sapiens chromosome 5 clone CTD-2034J20, complete sequence
          Length = 52368

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 101   attgtttattacaggcctagaaat 124
             |||||||||||||| |||||||||
Sbjct: 36359 attgtttattacagccctagaaat 36382
to top
>gb|AF400075.1|AF400075 Homo sapiens coagulation factor II (thrombin) receptor-like 1 (F2RL1)
            gene, complete cds
          Length = 18351

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 101  attgtttattacaggcctagaaat 124
            |||||||||||||| |||||||||
Sbjct: 8934 attgtttattacagccctagaaat 8957
to top
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     cgaacttgtcgatgccgatg 358
               ||||||||||||||||||||
Sbjct: 2234310 cgaacttgtcgatgccgatg 2234329
to top
>dbj|AK110336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-E12, full
            insert sequence
          Length = 2492

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 323  gcaggagcgctggcgccgaacttgtcgatgcc 354
            ||||| |||||||||||||| | |||||||||
Sbjct: 2107 gcaggtgcgctggcgccgaaatcgtcgatgcc 2076
to top
>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170588

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   tcctcctctccctccgttat 168
             ||||||||||||||||||||
Sbjct: 25608 tcctcctctccctccgttat 25589
to top
>gb|AC114962.2| Homo sapiens chromosome 5 clone RP11-206N2, complete sequence
          Length = 107278

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 101   attgtttattacaggcctagaaat 124
             |||||||||||||| |||||||||
Sbjct: 94759 attgtttattacagccctagaaat 94736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,780,274
Number of Sequences: 3902068
Number of extensions: 2780274
Number of successful extensions: 53235
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53092
Number of HSP's gapped (non-prelim): 119
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top