ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contai... 33 0.79
2VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contai... 32 1.0
3VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF) 31 2.3
4TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A pro... 30 3.9
5TSN10_HUMAN (Q9H1Z9) Tetraspanin-10 (Tspan-10) (Oculospanin) 30 3.9
6NUD17_HUMAN (P0C025) Putative nucleoside diphosphate-linked moie... 29 8.7

>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 289  SSFCNFLIVLLQLSCREQILSLTLHAFPPTDSSSNKCLSSPCTIHRYYQLLCRLTGPCVD 468
            SS C  L++ L   C + +   T +A    DS   + +   C +   Y  LCR  G CVD
Sbjct: 2136 SSHCQVLLLPLFAECHKVLAPATFYAICQQDSCHQEQV---CEVIASYAHLCRTNGVCVD 2192



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>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
 Frame = +1

Query: 289  SSFCNFLIVLLQLSCREQILSLTLHAFPPTDSSSNKCLSSPCTIHRYYQLLCRLTGPCVD 468
            SS C  L+      C + I   T H     DS   + +   C +   Y  LCR +G CVD
Sbjct: 2136 SSHCQVLLSASFAECHKVIAPATFHTICQQDSCHQERV---CEVIASYAHLCRTSGVCVD 2192

Query: 469  ---T*VFAMKSPVLLLK-------PRHPAG 528
               T   AM  P  L+        PRH  G
Sbjct: 2193 WRTTDFCAMSCPPSLVYNHCERGCPRHCDG 2222



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>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 286  TSSFCNFLIVLLQLSCREQILSLTLHAFPPTDSSSNKCLSSPCTIHRYYQLLCRLTGPCV 465
            +SS C  L+  L   C + +   T +A    DS   K +   C     Y  LCR  G CV
Sbjct: 2135 SSSHCQVLLSELFAECHKVLAPATFYAMCQPDSCHPKKV---CEAIALYAHLCRTKGVCV 2191

Query: 466  D 468
            D
Sbjct: 2192 D 2192



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>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = -2

Query: 582  GLGSLQQLWVGDDMQEVSSRWVPGLQEQHRRLHGEDLGIYTWTS*TAQELIISVNGAR** 403
            G  S+Q  W GDDM    +R   G +E+      ED+ I  W S ++QEL  S+N     
Sbjct: 1118 GPKSMQDGWCGDDMPLPGNR-PTGWEEE------EDVEIGMWNSNSSQELNSSLNWPPYT 1170

Query: 402  QALVRGAICGRKSVKGKG 349
            + +    + G+K  + +G
Sbjct: 1171 KKMSSKGLSGKKRRRERG 1188



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>TSN10_HUMAN (Q9H1Z9) Tetraspanin-10 (Tspan-10) (Oculospanin)|
          Length = 355

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 504 LEAQAPSGKRPLAYHRPPTTAANCPAP 584
           L +Q  +G++PL+ HRPPT+    P P
Sbjct: 9   LLSQETAGQKPLSVHRPPTSGCLGPVP 35



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>NUD17_HUMAN (P0C025) Putative nucleoside diphosphate-linked moiety X motif 17,|
           mitochondrial precursor (EC 3.6.1.-) (Nudix motif 17)
          Length = 295

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 526 PLGAWASRAAPATSWRRPRYLHM 458
           PLG W S   P  SW  P+Y H+
Sbjct: 160 PLGLWESAYPPRLSWGLPKYHHI 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,015,862
Number of Sequences: 219361
Number of extensions: 1698812
Number of successful extensions: 4064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4063
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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