ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal19i02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191068.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2247 Score = 137 bits (69), Expect = 5e-29 Identities = 130/150 (86%), Gaps = 3/150 (2%) Strand = Plus / Minus Query: 522 ggcaatgttgcttgtagtgaggtcaaatccataaacatgtcgttggcttcaacatcagac 581 ||||| ||| |||| || ||||||| |||||| ||||||| ||||||||||||||||| Sbjct: 2105 ggcaacgtttcttgcagcgaggtcagatccatgaacatgttactggcttcaacatcagac 2046 Query: 582 tcaaatgccatgtcaaatggatttgttgattttccaggctgaggtg---ccatgcccagt 638 ||||||||||||||||||||||||||||||||| ||||||||| || | ||| ||||| Sbjct: 2045 tcaaatgccatgtcaaatggatttgttgattttgcaggctgagatggcacgatgtccagt 1986 Query: 639 tggggttgaagtggtgcangaaatgatggc 668 || ||||||||||| || ||||||||||| Sbjct: 1985 tgctgttgaagtggtccacgaaatgatggc 1956
>emb|AJ575232.1|OSA575232 Oryza sativa (japonica cultivar-group) partial mRNA for ZIGA1 protein Length = 374 Score = 137 bits (69), Expect = 5e-29 Identities = 130/150 (86%), Gaps = 3/150 (2%) Strand = Plus / Minus Query: 522 ggcaatgttgcttgtagtgaggtcaaatccataaacatgtcgttggcttcaacatcagac 581 ||||| ||| |||| || ||||||| |||||| ||||||| ||||||||||||||||| Sbjct: 234 ggcaacgtttcttgcagcgaggtcagatccatgaacatgttactggcttcaacatcagac 175 Query: 582 tcaaatgccatgtcaaatggatttgttgattttccaggctgaggtg---ccatgcccagt 638 ||||||||||||||||||||||||||||||||| ||||||||| || | ||| ||||| Sbjct: 174 tcaaatgccatgtcaaatggatttgttgattttgcaggctgagatggcacgatgtccagt 115 Query: 639 tggggttgaagtggtgcangaaatgatggc 668 || ||||||||||| || ||||||||||| Sbjct: 114 tgctgttgaagtggtccacgaaatgatggc 85
>dbj|AK101729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F19, full insert sequence Length = 3225 Score = 137 bits (69), Expect = 5e-29 Identities = 130/150 (86%), Gaps = 3/150 (2%) Strand = Plus / Minus Query: 522 ggcaatgttgcttgtagtgaggtcaaatccataaacatgtcgttggcttcaacatcagac 581 ||||| ||| |||| || ||||||| |||||| ||||||| ||||||||||||||||| Sbjct: 2485 ggcaacgtttcttgcagcgaggtcagatccatgaacatgttactggcttcaacatcagac 2426 Query: 582 tcaaatgccatgtcaaatggatttgttgattttccaggctgaggtg---ccatgcccagt 638 ||||||||||||||||||||||||||||||||| ||||||||| || | ||| ||||| Sbjct: 2425 tcaaatgccatgtcaaatggatttgttgattttgcaggctgagatggcacgatgtccagt 2366 Query: 639 tggggttgaagtggtgcangaaatgatggc 668 || ||||||||||| || ||||||||||| Sbjct: 2365 tgctgttgaagtggtccacgaaatgatggc 2336
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432B10 Length = 131918 Score = 111 bits (56), Expect = 3e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 565 tggcttcaacatcagactcaaatgccatgtcaaatggatttgttgattttccaggctgag 624 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 108348 tggcttcaacatcagactcaaatgccatgtcaaatggatttgttgattttgcaggctgag 108289 Score = 40.1 bits (20), Expect = 9.1 Identities = 31/35 (88%) Strand = Plus / Minus Query: 634 ccagttggggttgaagtggtgcangaaatgatggc 668 ||||||| ||||||||||| || ||||||||||| Sbjct: 107765 ccagttgctgttgaagtggtccacgaaatgatggc 107731
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 111 bits (56), Expect = 3e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 565 tggcttcaacatcagactcaaatgccatgtcaaatggatttgttgattttccaggctgag 624 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 34611054 tggcttcaacatcagactcaaatgccatgtcaaatggatttgttgattttgcaggctgag 34610995 Score = 40.1 bits (20), Expect = 9.1 Identities = 31/35 (88%) Strand = Plus / Minus Query: 634 ccagttggggttgaagtggtgcangaaatgatggc 668 ||||||| ||||||||||| || ||||||||||| Sbjct: 34610471 ccagttgctgttgaagtggtccacgaaatgatggc 34610437
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 111 bits (56), Expect = 3e-21 Identities = 59/60 (98%) Strand = Plus / Minus Query: 565 tggcttcaacatcagactcaaatgccatgtcaaatggatttgttgattttccaggctgag 624 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 63071 tggcttcaacatcagactcaaatgccatgtcaaatggatttgttgattttgcaggctgag 63012 Score = 40.1 bits (20), Expect = 9.1 Identities = 31/35 (88%) Strand = Plus / Minus Query: 634 ccagttggggttgaagtggtgcangaaatgatggc 668 ||||||| ||||||||||| || ||||||||||| Sbjct: 62488 ccagttgctgttgaagtggtccacgaaatgatggc 62454
>gb|AY110934.1| Zea mays CL40382_1 mRNA sequence Length = 611 Score = 63.9 bits (32), Expect = 6e-07 Identities = 103/127 (81%) Strand = Plus / Plus Query: 436 cagaaggaatatattgcacagtagaattctgagacatccatggctctgctaagctaacag 495 |||||||||||||| || ||| ||||||||||| ||||||||||||| |||||| | | Sbjct: 485 cagaaggaatatatgacatagtggaattctgagaaatccatggctctgttaagctccccg 544 Query: 496 agtattcttcgggaacatgaggatccggcaatgttgcttgtagtgaggtcaaatccataa 555 | || ||| | || ||| |||| || |||||| |||| || |||||||||||||| | Sbjct: 545 aataatctgtgagagtgtgatgatctggtaatgtttcttgcagngaggtcaaatccatga 604 Query: 556 acatgtc 562 ||||||| Sbjct: 605 acatgtc 611
>ref|XM_635297.1| Dictyostelium discoideum hypothetical protein (DDB0214923), partial mRNA Length = 1746 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 597 aatggatttgttgattttccag 618 |||||||||||||||||||||| Sbjct: 184 aatggatttgttgattttccag 205
>gb|AF318287.1|AF318287 Dictyostelium discoideum putative calmodulin-binding protein CamBP64 mRNA, complete cds Length = 1841 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 597 aatggatttgttgattttccag 618 |||||||||||||||||||||| Sbjct: 263 aatggatttgttgattttccag 284
>emb|AL079343.4|CNS00M8T Human chromosome 14 DNA sequence BAC R-483C6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173480 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 tctgcacattcctttctgatat 170 |||||||||||||||||||||| Sbjct: 50462 tctgcacattcctttctgatat 50483
>gb|AC121812.3| Mus musculus chromosome 7 clone RP23-454P17, complete sequence Length = 162279 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 aatgccatgtcaaatggattt 605 ||||||||||||||||||||| Sbjct: 6473 aatgccatgtcaaatggattt 6453
>gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, complete sequence Length = 178900 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 357 aaatgtccttgctgtgctgagttca 381 |||||| |||||||||||||||||| Sbjct: 165700 aaatgtgcttgctgtgctgagttca 165724
>gb|AC123792.4| Mus musculus BAC clone RP24-309B14 from chromosome 7, complete sequence Length = 162493 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 aatgccatgtcaaatggattt 605 ||||||||||||||||||||| Sbjct: 147833 aatgccatgtcaaatggattt 147813
>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence Length = 206926 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 357 aaatgtccttgctgtgctgagttca 381 |||||| |||||||||||||||||| Sbjct: 131728 aaatgtgcttgctgtgctgagttca 131704
>gb|AC132266.4| Mus musculus BAC clone RP24-380L14 from chromosome 10, complete sequence Length = 176497 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tccatcatcagcaccattct 315 |||||||||||||||||||| Sbjct: 14240 tccatcatcagcaccattct 14259
>gb|AC156570.2| Mus musculus BAC clone RP23-242N11 from chromosome 3, complete sequence Length = 198738 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atacaggagagctgggagtg 188 |||||||||||||||||||| Sbjct: 147061 atacaggagagctgggagtg 147080
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 acagagctgaaggacacagc 101 |||||||||||||||||||| Sbjct: 43846 acagagctgaaggacacagc 43865
>ref|XM_865210.1| PREDICTED: Bos taurus similar to parvin, gamma, transcript variant 3 (LOC505984), mRNA Length = 1354 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 caggagagctgggagtgaga 191 |||||||||||||||||||| Sbjct: 965 caggagagctgggagtgaga 946
>ref|XM_582360.2| PREDICTED: Bos taurus similar to parvin, gamma, transcript variant 1 (LOC505984), mRNA Length = 1146 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 caggagagctgggagtgaga 191 |||||||||||||||||||| Sbjct: 758 caggagagctgggagtgaga 739
>ref|XM_875286.1| PREDICTED: Bos taurus similar to parvin, gamma, transcript variant 4 (LOC505984), mRNA Length = 1124 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 caggagagctgggagtgaga 191 |||||||||||||||||||| Sbjct: 735 caggagagctgggagtgaga 716
>gb|AC146391.4| Pan troglodytes BAC clone RP43-56L16 from 7, complete sequence Length = 155929 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 tgctgagttcagtatatggg 390 |||||||||||||||||||| Sbjct: 103169 tgctgagttcagtatatggg 103150
>ref|XM_676090.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7913.2), mRNA Length = 1506 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gtccatcatcagcaccattc 314 |||||||||||||||||||| Sbjct: 978 gtccatcatcagcaccattc 997
>gb|AY317962.1| Mus musculus olfactory receptor Olfr787 (Olfr787) gene, complete cds Length = 939 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tccatcatcagcaccattct 315 |||||||||||||||||||| Sbjct: 652 tccatcatcagcaccattct 671
>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete sequence Length = 221525 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctcatctgtccatcatcag 306 |||||||||||||||||||| Sbjct: 153884 cctcatctgtccatcatcag 153865
>emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 in linkage group 11, complete sequence Length = 204337 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 593 gtcaaatggatttgttgatt 612 |||||||||||||||||||| Sbjct: 131184 gtcaaatggatttgttgatt 131165
>gb|AC124186.3| Mus musculus BAC clone RP23-232B20 from chromosome 3, complete sequence Length = 195957 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atacaggagagctgggagtg 188 |||||||||||||||||||| Sbjct: 36288 atacaggagagctgggagtg 36307
>gb|AC117275.3| Mus musculus BAC clone RP23-383F11 from chromosome 18, complete sequence Length = 209162 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gaacggatttcttggtggaaaatg 361 ||||||||||| |||||||||||| Sbjct: 85253 gaacggatttcctggtggaaaatg 85276
>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence Length = 164223 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 598 atggatttgttgattttcca 617 |||||||||||||||||||| Sbjct: 133406 atggatttgttgattttcca 133425
>gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, complete sequence Length = 179908 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tgaaggacacagcagctttg 108 |||||||||||||||||||| Sbjct: 114626 tgaaggacacagcagctttg 114607
>gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, complete sequence Length = 196566 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cctcatctgtccatcatcag 306 |||||||||||||||||||| Sbjct: 78697 cctcatctgtccatcatcag 78678
>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence Length = 226307 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 598 atggatttgttgattttcca 617 |||||||||||||||||||| Sbjct: 50746 atggatttgttgattttcca 50765
>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence Length = 197964 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 acagagctgaaggacacagc 101 |||||||||||||||||||| Sbjct: 9976 acagagctgaaggacacagc 9957
>gb|AC139189.1| Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence Length = 164874 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 ccatggctctgctaagctaacaga 496 ||||||||||||||||| |||||| Sbjct: 90597 ccatggctctgctaagcaaacaga 90620
>emb|AL442127.7| Human DNA sequence from clone RP11-297I6 on chromosome 13 Contains two novel genes, the 5' end of the EFNB2 gene for ephrin-B2 (HTKL EPLG5 LERK5), an ATP synthase H+ transporting mitochondrial F0 complex subunit c pseudogene and two CpG islands, complete sequence Length = 210115 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 acacagcagctttgcttcaggtga 118 |||||||||||||||||| ||||| Sbjct: 45495 acacagcagctttgcttctggtga 45472
>emb|AL353576.18| Human DNA sequence from clone RP11-335J9 on chromosome 10 Contains the 5' end of the gene for a novel protein possible ortholog of mouse C1q-like protein (gliacolin) and a CpG island, complete sequence Length = 52065 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 atttgttgattttccaggct 621 |||||||||||||||||||| Sbjct: 42872 atttgttgattttccaggct 42853
>emb|AL354836.13| Human DNA sequence from clone RP11-157P1 on chromosome 20 Contains the LAMA5 gene for laminin alpha 5 (KIAA0533), the GP110 gene for cell membrane glycoprotein (surface antigen), 110000M(r), the KIAA0772 gene with similarity to the gene for oxysterol-binding protein and two putative novel genes, complete sequence Length = 141056 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aggacacagcagctttgctt 111 |||||||||||||||||||| Sbjct: 23417 aggacacagcagctttgctt 23436
>emb|AL035411.28|HS592A1 Human DNA sequence from clone RP4-592A1 on chromosome 1p31.2-32.3 Contains the 3' end of a novel gene (KIAA1915), an adenylate kinase 2 (AK2) pseudogene, the TACSTD2 gene for tumor-associated calcium signal transducer 2 and a CpG island, complete sequence Length = 146112 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaaagactccagcacaccag 137 |||||||||||||||||||| Sbjct: 18471 aaaagactccagcacaccag 18452
>emb|Z99167.1|SPAC3G6 S.pombe chromosome I cosmid c3G6 Length = 28491 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 tggatttgttgattttccag 618 |||||||||||||||||||| Sbjct: 8756 tggatttgttgattttccag 8775
>dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, complete sequences Length = 163369 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 ccatggctctgctaagctaacaga 496 ||||||||||||||||| |||||| Sbjct: 51802 ccatggctctgctaagcaaacaga 51825
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 ccatggctctgctaagctaacaga 496 ||||||||||||||||| |||||| Sbjct: 21779020 ccatggctctgctaagcaaacaga 21778997
>gb|DQ360825.1| Bacillus cereus plasmid pBCE4810 hypothetical protein, CAAX amino terminal protease, and pXO-14-like conserved protein genes, complete cds; cereulide synthetase gene cluster, complete sequence; pXO-11-like hypothetical protein, reverse transcriptase, and pXO1-10-like hypothetical protein genes, complete cds; and pXO1-8-like hypothetical protein gene, partial cds Length = 35864 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tacaacagagctgaaggaca 97 |||||||||||||||||||| Sbjct: 27130 tacaacagagctgaaggaca 27111
>gb|AY074037.1| Mus musculus olfactory receptor MOR111-10 pseudogene, partial sequence Length = 937 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tccatcatcagcaccattct 315 |||||||||||||||||||| Sbjct: 653 tccatcatcagcaccattct 672
>gb|AC078993.20| Homo sapiens Xp BAC RP11-431J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 214001 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aaactgtgcggagcaaaacc 62 |||||||||||||||||||| Sbjct: 182331 aaactgtgcggagcaaaacc 182312
>ref|NM_001020401.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3G6.04), partial mRNA Length = 1110 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 tggatttgttgattttccag 618 |||||||||||||||||||| Sbjct: 813 tggatttgttgattttccag 832
>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence Length = 203909 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tccatcatcagcaccattct 315 |||||||||||||||||||| Sbjct: 177488 tccatcatcagcaccattct 177507
>ref|NM_001011822.1| Mus musculus olfactory receptor 787 (Olfr787), mRNA Length = 939 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tccatcatcagcaccattct 315 |||||||||||||||||||| Sbjct: 652 tccatcatcagcaccattct 671
>gb|AC174383.3| Mus musculus BAC clone RP23-244A20 from chromosome 18, complete sequence Length = 216950 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 gaacggatttcttggtggaaaatg 361 ||||||||||| |||||||||||| Sbjct: 194131 gaacggatttcctggtggaaaatg 194154
>gb|AC004103.1|AC004103 Homo sapiens Xp22 BAC GS-619J3 (Genome Systems Human BAC library) complete sequence Length = 144368 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aaactgtgcggagcaaaacc 62 |||||||||||||||||||| Sbjct: 98831 aaactgtgcggagcaaaacc 98812
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 atggaatcgaagatatctac 213 |||||||||||||||||||| Sbjct: 1930259 atggaatcgaagatatctac 1930240
>gb|U24430.1|SPU24430 Schizosaccharomyces pombe Rnp24p (rnp24) gene, complete cds Length = 1767 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 tggatttgttgattttccag 618 |||||||||||||||||||| Sbjct: 1281 tggatttgttgattttccag 1300 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,119,572 Number of Sequences: 3902068 Number of extensions: 6119572 Number of successful extensions: 113156 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113016 Number of HSP's gapped (non-prelim): 137 length of query: 669 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 646 effective length of database: 17,143,297,704 effective search space: 11074570316784 effective search space used: 11074570316784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
