>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 114/135 (84%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                         
Query: 605   cattcaaggccgcaccaatgtcaagtttgtaccatgagtcacgttctttcccaagct-gt 663
             ||||||||||| ||||||||||||| |||||||||||| |||  ||| || |||| | | 
Sbjct: 51146 cattcaaggccacaccaatgtcaaggttgtaccatgaggcacactctctctcaaggttga 51087

                                                                         
Query: 664   gtacagaaaggtggacataaaaacaaatcaattatcattattgtttgctagcccatttga 723
             |||||||||| | ||||| ||||||||||||||||| ||||  ||| ||||| |||||| 
Sbjct: 51086 gtacagaaagctagacatgaaaacaaatcaattatctttatatttttctagcacatttgg 51027

                            
Query: 724   ctttaacatttagaa 738
             ||| |||||| ||||
Sbjct: 51026 cttcaacattcagaa 51012

>gb|AC171638.2| Rhesus Macaque  BAC CH250-504D18 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 160646

 Score = 48.1 bits (24), Expect = 0.043
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 288    agttgctatttgcaagctgctgct 311
              ||||||||||||||||||||||||
Sbjct: 145066 agttgctatttgcaagctgctgct 145043

>gb|AC154032.1| Drosophila melanogaster clone BACR16N23, complete sequence
          Length = 149839

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 97    ttttttgtatttatacagaactg 119
             |||||||||||||||||||||||
Sbjct: 64931 ttttttgtatttatacagaactg 64909

>gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete sequence
          Length = 165458

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 97    ttttttgtatttatacagaactg 119
             |||||||||||||||||||||||
Sbjct: 63801 ttttttgtatttatacagaactg 63823

>emb|BX005235.8| Zebrafish DNA sequence from clone DKEY-68L7 in linkage group 23,
             complete sequence
          Length = 141636

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 139   taaataaattacctaatgaagtt 161
             |||||||||||||||||||||||
Sbjct: 99513 taaataaattacctaatgaagtt 99491

>gb|AE003847.5| Drosophila melanogaster chromosome 4, section 4 of 5 of the complete
             sequence
          Length = 107108

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 97    ttttttgtatttatacagaactg 119
             |||||||||||||||||||||||
Sbjct: 81785 ttttttgtatttatacagaactg 81763

>emb|AL929508.6| Zebrafish DNA sequence from clone CH211-158G13, complete sequence
          Length = 180029

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 139    taaataaattacctaatgaagtt 161
              |||||||||||||||||||||||
Sbjct: 119398 taaataaattacctaatgaagtt 119420

>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0036K13 map near R3342S, complete sequence
          Length = 135684

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 414   catctatttagaaacagagatagtac 439
             |||||||||| |||||||||||||||
Sbjct: 37245 catctatttaaaaacagagatagtac 37270

>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 217066

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 58     caaaaaatacagtataaacaag 79
              ||||||||||||||||||||||
Sbjct: 210583 caaaaaatacagtataaacaag 210604

>gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, complete sequence
          Length = 220622

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 84     ctttgatctgacattttttgta 105
              ||||||||||||||||||||||
Sbjct: 199290 ctttgatctgacattttttgta 199269

>gb|AC116582.3| Mus musculus BAC clone RP23-340C13 from 9, complete sequence
          Length = 214625

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 84     ctttgatctgacattttttgta 105
              ||||||||||||||||||||||
Sbjct: 184776 ctttgatctgacattttttgta 184797

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 414      catctatttagaaacagagatagtac 439
                |||||||||| |||||||||||||||
Sbjct: 27501118 catctatttaaaaacagagatagtac 27501143

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 414     catctatttagaaacagagatagtac 439
               |||||||||| |||||||||||||||
Sbjct: 3172300 catctatttaaaaacagagatagtac 3172275

>gb|AC078851.4| Homo sapiens BAC clone RP11-350N1 from 2, complete sequence
          Length = 201303

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 680   ataaaaacaaatcaattatcattatt 705
             ||||||||||| ||||||||||||||
Sbjct: 35444 ataaaaacaaagcaattatcattatt 35419

>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455F03
          Length = 158201

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 414   catctatttagaaacagagatagtac 439
             |||||||||| |||||||||||||||
Sbjct: 87290 catctatttaaaaacagagatagtac 87265

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 414      catctatttagaaacagagatagtac 439
                |||||||||| |||||||||||||||
Sbjct: 27525106 catctatttaaaaacagagatagtac 27525131

>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence
          Length = 197551

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 689   aatcaattatcattattgttt 709
             |||||||||||||||||||||
Sbjct: 61698 aatcaattatcattattgttt 61718

>gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, complete sequence
          Length = 176176

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 689    aatcaattatcattattgttt 709
              |||||||||||||||||||||
Sbjct: 165721 aatcaattatcattattgttt 165741

>emb|BX088563.4| Human DNA sequence from clone RP11-1066D24 on chromosome X, complete
             sequence
          Length = 97771

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   taaatttcactatgtacattt 274
             |||||||||||||||||||||
Sbjct: 76759 taaatttcactatgtacattt 76779

>emb|X89633.1|SCVCOSMGN S.cerevisiae DNA for VPH1, MOD5, CAP20, ORF1 and SNF2 genes
          Length = 37672

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 37    tatatcagtgaaacgatgcaacaaa 61
             |||||||||||||| ||||||||||
Sbjct: 24699 tatatcagtgaaactatgcaacaaa 24723

>emb|AL627343.16| Mouse DNA sequence from clone RP23-382J14 on chromosome 11, complete
             sequence
          Length = 121496

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 494   ttgaaatgcatgaggacattg 514
             |||||||||||||||||||||
Sbjct: 52355 ttgaaatgcatgaggacattg 52375

>emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in linkage group 9,
             complete sequence
          Length = 146527

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 722   gactttaacatttagaagacg 742
             |||||||||||||||||||||
Sbjct: 60193 gactttaacatttagaagacg 60173

>gb|AC010297.5| Homo sapiens chromosome 5 clone CTB-162J7, complete sequence
          Length = 157580

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     ttttttgtatttatacagaac 117
              |||||||||||||||||||||
Sbjct: 131284 ttttttgtatttatacagaac 131304

>gb|AC159296.2| Mus musculus BAC clone RP23-278O17 from chromosome 12, complete sequence
          Length = 194140

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 365    tttgttggtgtcttgcatgca 385
              |||||||||||||||||||||
Sbjct: 102129 tttgttggtgtcttgcatgca 102149

>gb|AC084459.1|AC084459 Caenorhabditis briggsae cosmid CB032J19, complete sequence
          Length = 92783

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 511   attgatcttgtatttctgaaacaat 535
             |||||||||| ||||||||||||||
Sbjct: 78176 attgatcttgaatttctgaaacaat 78200

>gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence
          Length = 72291

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 518   ttgtatttctgaaacaatatc 538
             |||||||||||||||||||||
Sbjct: 32955 ttgtatttctgaaacaatatc 32975

>emb|CR376843.11| Zebrafish DNA sequence from clone CH211-284N15 in linkage group 19,
             complete sequence
          Length = 75162

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    tctgacattttttgtatttat 110
             |||||||||||||||||||||
Sbjct: 17111 tctgacattttttgtatttat 17131

>emb|Z75192.1|SCYOR284W S.cerevisiae chromosome XV reading frame ORF YOR284w
          Length = 1489

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 37  tatatcagtgaaacgatgcaacaaa 61
           |||||||||||||| ||||||||||
Sbjct: 318 tatatcagtgaaactatgcaacaaa 342

>emb|AL928975.10| Zebrafish DNA sequence from clone CH211-133N4, complete sequence
          Length = 174480

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    acaaaaaatacagtataaaca 77
             |||||||||||||||||||||
Sbjct: 79187 acaaaaaatacagtataaaca 79207

>gb|AC133174.5| Mus musculus BAC clone RP24-314N20 from 12, complete sequence
          Length = 208222

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 365   tttgttggtgtcttgcatgca 385
             |||||||||||||||||||||
Sbjct: 38973 tttgttggtgtcttgcatgca 38993


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,354,896
Number of Sequences: 3902068
Number of extensions: 10354896
Number of successful extensions: 206994
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206755
Number of HSP's gapped (non-prelim): 238
length of query: 757
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 734
effective length of database: 17,143,297,704
effective search space: 12583180514736
effective search space used: 12583180514736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)