| Clone Name | rbaal19g16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468587.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 165 bits (83), Expect = 2e-37 Identities = 143/163 (87%) Strand = Plus / Minus Query: 442 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgttaccaatttt 501 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| |||||||| Sbjct: 468 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgttgccaatttt 409 Query: 502 gtatccatcaagctccagagatttcagggcaacttcatctgactcgaaggtgacgaaggc 561 | |||| |||||||| ||||| |||| | || || | ||||||||||| |||||| || Sbjct: 408 gaatccgtcaagctcaagagacttcattaccacctcgtttgactcgaaggagacgaacgc 349 Query: 562 gaggccgcggaagttgccggagtccgggaagcgggagagctgg 604 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 348 gaggccgcggaagttgccggagtccgggaagcgagagagctgg 306 Score = 131 bits (66), Expect = 3e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 194 ccgcgcagttcagattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaa 253 ||||||||||||||||||||||| || ||||| ||||||||||| || |||||||| ||| Sbjct: 716 ccgcgcagttcagattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaa 657 Query: 254 tcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttattgat 313 |||||||| || || ||||||||||| ||||||||||||| ||| ||||| ||||| ||| Sbjct: 656 tcaacatgacaaaaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgat 597 Query: 314 gcaatc 319 | |||| Sbjct: 596 gaaatc 591
>dbj|AK066740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082B19, full insert sequence Length = 1092 Score = 165 bits (83), Expect = 2e-37 Identities = 143/163 (87%) Strand = Plus / Minus Query: 442 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgttaccaatttt 501 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| |||||||| Sbjct: 604 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgttgccaatttt 545 Query: 502 gtatccatcaagctccagagatttcagggcaacttcatctgactcgaaggtgacgaaggc 561 | |||| |||||||| ||||| |||| | || || | ||||||||||| |||||| || Sbjct: 544 gaatccgtcaagctcaagagacttcattaccacctcgtttgactcgaaggagacgaacgc 485 Query: 562 gaggccgcggaagttgccggagtccgggaagcgggagagctgg 604 ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 484 gaggccgcggaagttgccggagtccgggaagcgagagagctgg 442 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 146 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 205 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 900 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 841 Query: 206 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 265 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 840 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 781 Query: 266 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 319 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 780 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 727
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 146 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 205 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 1303807 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303748 Query: 206 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 265 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 1303747 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303688 Query: 266 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 319 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 1303687 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303634 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 544 ctcgaaggtgacgaaggcgaggccgcggaagttgccggagtccgggaagcgggagagctg 603 |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1302733 ctcgaaggagacgaacgcgaggccgcggaagttgccggagtccgggaagcgagagagctg 1302674 Query: 604 g 604 | Sbjct: 1302673 g 1302673 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 442 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgtt 492 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 1303511 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgtt 1303461
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 146 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 205 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 1303805 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 1303746 Query: 206 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 265 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 1303745 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 1303686 Query: 266 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 319 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 1303685 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 1303632 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 544 ctcgaaggtgacgaaggcgaggccgcggaagttgccggagtccgggaagcgggagagctg 603 |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1302731 ctcgaaggagacgaacgcgaggccgcggaagttgccggagtccgggaagcgagagagctg 1302672 Query: 604 g 604 | Sbjct: 1302671 g 1302671 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 442 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgtt 492 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 1303509 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgtt 1303459
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 146 agccttcaggccctgttgatgatagcatacgctatcttcacgggtcttccgcgcagttca 205 ||||||||| ||||||| ||| |||||| | |||||| | |||| |||||||||||| Sbjct: 108709 agccttcagcccctgttactgacagcatatgatatcttgataggtcggccgcgcagttca 108650 Query: 206 gattgattcatcccgacagctttctcaagcgattcatcgtcctcgaaatcaacatggcag 265 ||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 108649 gattgattcattcctacagccttctcaagcgactcgtcgtcctcaaaatcaacatgacaa 108590 Query: 266 aagccacgagaatctcctgttctcttgtcgatggcaaatcttattgatgcaatc 319 || ||||||||||| ||||||||||||| ||| ||||| ||||| |||| |||| Sbjct: 108589 aaaccacgagaatcacctgttctcttgttgatagcaaaccttatcgatgaaatc 108536 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 544 ctcgaaggtgacgaaggcgaggccgcggaagttgccggagtccgggaagcgggagagctg 603 |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 107635 ctcgaaggagacgaacgcgaggccgcggaagttgccggagtccgggaagcgagagagctg 107576 Query: 604 g 604 | Sbjct: 107575 g 107575 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 442 cctcttcgagctagcagtaatcctgcatctttcaaccctcataaacctgtt 492 ||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 108413 cctcttcgagccagcagccaacctgcatctttcaactctcataaacctgtt 108363
>gb|BT018692.1| Zea mays clone EL01N0512E07.d mRNA sequence Length = 1700 Score = 73.8 bits (37), Expect = 6e-10 Identities = 121/149 (81%) Strand = Plus / Minus Query: 251 aaatcaacatggcagaagccacgagaatctcctgttctcttgtcgatggcaaatcttatt 310 ||||||||||| || |||||| | ||| | || ||||| ||||| ||| | || |||| | Sbjct: 227 aaatcaacatgacaaaagccatgggaacccccagttcttttgtcaatgacgaaccttact 168 Query: 311 gatgcaatccttgacgatttgaagaaatctctcaaatccttctcactgatgttccatgag 370 |||||||| | || || |||||||||||| ||| || || ||| ||| ||||||| || Sbjct: 167 aatgcaatcttcgatgagctgaagaaatctcgcaagtcattttcaatgacgttccataag 108 Query: 371 agattgccgacataagccgagaggcagcc 399 ||||| || |||||||||||||||||||| Sbjct: 107 agattaccaacataagccgagaggcagcc 79
>gb|AY110713.1| Zea mays CL7875_1 mRNA sequence Length = 655 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 361 gttccatgagagattgccgacataagccgagaggcagccatcgggcttct 410 |||||||||||| ||||| ||||| |||||||||||||| |||| ||||| Sbjct: 553 gttccatgagaggttgccaacatatgccgagaggcagccttcggacttct 602
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 555 cgaaggcgaggccgcggaagttgccggag 583 ||||| |||||||| |||||||||||||| Sbjct: 63528 cgaagtcgaggccgaggaagttgccggag 63500
>gb|AC025501.19| Mus musculus chromosome 10, clone RP23-129O23, complete sequence Length = 218156 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tgcatctttcaaccctcata 484 |||||||||||||||||||| Sbjct: 57089 tgcatctttcaaccctcata 57070
>gb|AC109298.19| Mus musculus chromosome 3, clone RP24-271A4, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ttctggcaaatatatggcatgttt 49 |||||||||||||| ||||||||| Sbjct: 169973 ttctggcaaatatagggcatgttt 169996
>ref|XM_363563.1| Magnaporthe grisea 70-15 hypothetical protein (MG01489.4) partial mRNA Length = 2940 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ctcgaaatcaacatggcaga 266 |||||||||||||||||||| Sbjct: 2164 ctcgaaatcaacatggcaga 2183
>gb|AC147132.3| Mus musculus BAC clone RP24-189K3 from chromosome 7, complete sequence Length = 189225 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 cataaacctgttaccaattt 500 |||||||||||||||||||| Sbjct: 91549 cataaacctgttaccaattt 91568
>gb|AC132462.4| Mus musculus BAC clone RP23-35F22 from chromosome 7, complete sequence Length = 194641 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 ctcgaaggtgacgaaggcga 563 |||||||||||||||||||| Sbjct: 97132 ctcgaaggtgacgaaggcga 97151
>gb|AC147638.2| Mus musculus BAC clone RP23-181L5 from chromosome 7, complete sequence Length = 196114 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 cataaacctgttaccaattt 500 |||||||||||||||||||| Sbjct: 4367 cataaacctgttaccaattt 4386
>ref|XM_909704.2| PREDICTED: Mus musculus RIKEN cDNA 1700012H05 gene (1700012H05Rik), mRNA Length = 1612 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 ctcgaaggtgacgaaggcga 563 |||||||||||||||||||| Sbjct: 511 ctcgaaggtgacgaaggcga 492
>gb|AY226051.1| Suberites fuscus alpha-tubulin mRNA, partial cds Length = 1152 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tggcaaatatatggcatgtt 48 |||||||||||||||||||| Sbjct: 861 tggcaaatatatggcatgtt 880
>emb|AL138744.41| Human DNA sequence from clone RP13-257M1 on chromosome Xp11.23-11.4 Contains part of the UTX gene for ubiquitously transcribed tetratricopeptide repeat gene X chromosome and a CpG island, complete sequence Length = 143968 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 atttgaagaaatctctcaaa 346 |||||||||||||||||||| Sbjct: 31431 atttgaagaaatctctcaaa 31412
>emb|AL691456.7| Mouse DNA sequence from clone RP23-468K2 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and the Trim32 gene for tripartite motif protein 32, complete sequence Length = 158960 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggtctatagaaacataatg 68 |||||||||||||||||||| Sbjct: 67575 tggtctatagaaacataatg 67556
>emb|AJ717314.1| Gigaspora margarita partial atub gene for alpha tubulin, exon 2 Length = 1380 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tggcaaatatatggcatgtt 48 |||||||||||||||||||| Sbjct: 1080 tggcaaatatatggcatgtt 1099
>ref|NM_029660.1| Mus musculus RIKEN cDNA 1700012H05 gene (1700012H05Rik), mRNA Length = 1473 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 ctcgaaggtgacgaaggcga 563 |||||||||||||||||||| Sbjct: 237 ctcgaaggtgacgaaggcga 218
>dbj|AK005907.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700012H05 product:TESTES SPECIFIC HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN G-T homolog [Homo sapiens], full insert sequence Length = 1473 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 ctcgaaggtgacgaaggcga 563 |||||||||||||||||||| Sbjct: 237 ctcgaaggtgacgaaggcga 218
>emb|Z78015.1|CER02D5 Caenorhabditis elegans Cosmid R02D5, complete sequence Length = 41076 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 atttcagggcaacttcatct 541 |||||||||||||||||||| Sbjct: 1887 atttcagggcaacttcatct 1906
>gb|AC142415.4| Mus musculus BAC clone RP23-155F24 from 10, complete sequence Length = 209693 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 tgcatctttcaaccctcata 484 |||||||||||||||||||| Sbjct: 126627 tgcatctttcaaccctcata 126646 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,958,877 Number of Sequences: 3902068 Number of extensions: 4958877 Number of successful extensions: 90189 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90086 Number of HSP's gapped (non-prelim): 101 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)