ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19g15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 240 5e-60
2gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 240 5e-60
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 240 5e-60
4dbj|AK101765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
5gb|BT017847.1| Zea mays clone EL01N0510F04.c mRNA sequence 103 8e-19
6gb|AY107917.1| Zea mays PCO071987 mRNA sequence 103 8e-19
7gb|AE004836.1| Pseudomonas aeruginosa PAO1, section 397 of 529 o... 66 2e-07
8gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 62 3e-06
9emb|CR555306.1| Azoarcus sp. EbN1 complete genome 62 3e-06
10gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 60 1e-05
11gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 60 1e-05
12gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 60 1e-05
13emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 60 1e-05
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 60 1e-05
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 60 1e-05
16gb|AE015451.1| Pseudomonas putida KT2440 complete genome 56 2e-04
17gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 54 6e-04
18gb|AF241171.1|AF241171 Pseudomonas aeruginosa pathogenicity isla... 54 6e-04
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 52 0.002
20gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 52 0.002
21dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 52 0.002
22dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 52 0.002
23dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 52 0.002
24gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 52 0.002
25ref|NM_183955.1| Oryza sativa (japonica cultivar-group), predic... 50 0.010
26gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 50 0.010
27gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 50 0.010
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
29dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
30dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 50 0.010
31dbj|AK063921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
32gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 48 0.039
33gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome ... 48 0.039
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.039
35gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 48 0.039
36gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
37gb|AY502075.1| Rhodococcus sp. DK17 plasmid pDK2, partial sequence 46 0.15
38gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, com... 46 0.15
39gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
40dbj|AB107790.2| Rhodococcus sp. RHA1 bphB1, bphS, bphT for cis-b... 46 0.15
41emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.61
42gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, comp... 44 0.61
43ref|XM_463896.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
44gb|AY458630.1| Uncultured bacterium 106 clone EBAC750-01B07 geno... 42 2.4
45emb|AL929089.5| Mouse DNA sequence from clone RP24-402O2 on chro... 42 2.4
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
47dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
48dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
49dbj|AK066406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
50gb|AC133425.3| Rattus norvegicus 7 BAC CH230-333I12 (Children's ... 40 9.5
51gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 9.5
52gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, comp... 40 9.5
53gb|AC119176.10| Mus musculus chromosome 1, clone RP24-359F24, co... 40 9.5
54emb|BX784394.3| Zebrafish DNA sequence from clone CH211-150C22 i... 40 9.5
55gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 40 9.5
56emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chro... 40 9.5
57dbj|AB016845.1| Streptomyces thermoviolaceus NagR gene, complete... 40 9.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  240 bits (121), Expect = 5e-60
 Identities = 214/245 (87%)
 Strand = Plus / Plus

                                                                            
Query: 77       gctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgc 136
                ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |||
Sbjct: 10788019 gctcacatcctgctcttccggaccgggcccaattccttggccttggccctcagctcgtgc 10788078

                                                                            
Query: 137      ttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggacc 196
                ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 10788079 ttcttgatcttccccgtcgccgtcttgggcagcggcccgaacacgacggacttgggcacc 10788138

                                                                            
Query: 197      cagtagcccggcaggcgctcgcggcagaacttgatcacgttagcagccattgctgcttcg 256
                ||||| |||||||| | ||| |||||||||   || | ||   | || | ||| || |||
Sbjct: 10788139 cagtaccccggcagcctctcccggcagaaccgcatgatgtcgccggcgagtgccgcctcg 10788198

                                                                            
Query: 257      tcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccactgc 316
                |||||||||||  ||||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 10788199 tcggagctgtcggcgccgtccttgggcgtcacgaacgcgcatggcgactccccccactgc 10788258

                     
Query: 317      tcgtc 321
                |||||
Sbjct: 10788259 tcgtc 10788263



 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Plus

                                                                            
Query: 76       agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 135
                |||||||||||||||||||  ||| ||||| || ||||||||||| |  |||||||| ||
Sbjct: 10796069 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 10796128

                                                                            
Query: 136      cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 195
                |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 10796129 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 10796188

                              
Query: 196      ccagtagcccggca 209
                |||||| |||||||
Sbjct: 10796189 ccagtaccccggca 10796202



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                            
Query: 605      acctgacgaagacatatgcttgttccacagatagcagcaagcgtccatgtatagcaccag 664
                |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 10789756 acctgacgaagacaaatgcttgttccacaaagagcagcaagtgtccatgtatagcaccag 10789815

                                           
Query: 665      ccgttgcagtggaacatcggcaaagtc 691
                || || |||||||||||||||||||||
Sbjct: 10789816 ccattacagtggaacatcggcaaagtc 10789842



 Score =  119 bits (60), Expect = 1e-23
 Identities = 222/276 (80%)
 Strand = Plus / Plus

                                                                            
Query: 334      gtcccactctggcttccatgcacacaccgtagatggcccatatgtctccgagaggccata 393
                ||||||||| |||||||| || |||||||| || || || || ||||| || || || ||
Sbjct: 10788645 gtcccactccggcttccacgcgcacaccgtggacgggccgtacgtctcggacagcccgta 10788704

                                                                            
Query: 394      cgtatgagagacacggaaaccgagcttcgacattgcggcaaggactgagggcggtggggc 453
                 || || | ||  |||||||||||||||||||| |  || || || || ||||| || ||
Sbjct: 10788705 ggtgtgggtgatgcggaaaccgagcttcgacatggacgcgagcaccgacggcggcggcgc 10788764

                                                                            
Query: 454      agcgccagcagtcatgacatcgacaacgcgaggcagcgggagaatggtgtcaactggagg 513
                 ||||| || |||||||| | ||| || || ||||| ||||| |||| |||| | || ||
Sbjct: 10788765 ggcgccggcggtcatgacgttgacgacacgcggcagggggaggatggcgtcagccggcgg 10788824

                                                                            
Query: 514      ggcgttgatgatggtgttgagcacaactggcgccccacagaagtgagttactccttggtt 573
                 ||||||| |||||||||||| ||||| || || ||||||||||| || || ||||||||
Sbjct: 10788825 agcgttgacgatggtgttgaggacaaccggtgcaccacagaagtgggtcacgccttggtt 10788884

                                                    
Query: 574      ggctatcgctgagaagatagccttcgctgtgacctg 609
                ||||||||| |||||||| ||||| ||||| |||||
Sbjct: 10788885 ggctatcgccgagaagatggcctttgctgtaacctg 10788920



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                            
Query: 254      tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 313
                ||||||||||||||  |||| ||||||||||| || || ||||| |||||||||||||||
Sbjct: 10796247 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 10796306

                        
Query: 314      tgctcgtc 321
                ||||||||
Sbjct: 10796307 tgctcgtc 10796314



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 661     ccagccgttgcagtggaacatcggcaaagtc 691
               ||||||||||||||||||||| |||| ||||
Sbjct: 1867569 ccagccgttgcagtggaacatgggcacagtc 1867599



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 658     gcaccagccgttgcagtggaacatcggca 686
               |||||| ||||||||||||||||| ||||
Sbjct: 1863640 gcaccacccgttgcagtggaacatgggca 1863668
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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score =  240 bits (121), Expect = 5e-60
 Identities = 214/245 (87%)
 Strand = Plus / Minus

                                                                         
Query: 77    gctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgc 136
             ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |||
Sbjct: 66868 gctcacatcctgctcttccggaccgggcccaattccttggccttggccctcagctcgtgc 66809

                                                                         
Query: 137   ttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggacc 196
             ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 66808 ttcttgatcttccccgtcgccgtcttgggcagcggcccgaacacgacggacttgggcacc 66749

                                                                         
Query: 197   cagtagcccggcaggcgctcgcggcagaacttgatcacgttagcagccattgctgcttcg 256
             ||||| |||||||| | ||| |||||||||   || | ||   | || | ||| || |||
Sbjct: 66748 cagtaccccggcagcctctcccggcagaaccgcatgatgtcgccggcgagtgccgcctcg 66689

                                                                         
Query: 257   tcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccactgc 316
             |||||||||||  ||||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 66688 tcggagctgtcggcgccgtccttgggcgtcacgaacgcgcatggcgactccccccactgc 66629

                  
Query: 317   tcgtc 321
             |||||
Sbjct: 66628 tcgtc 66624



 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                         
Query: 76    agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 135
             |||||||||||||||||||  ||| ||||| || ||||||||||| |  |||||||| ||
Sbjct: 58818 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 58759

                                                                         
Query: 136   cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 195
             |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 58758 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 58699

                           
Query: 196   ccagtagcccggca 209
             |||||| |||||||
Sbjct: 58698 ccagtaccccggca 58685



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Minus

                                                                         
Query: 605   acctgacgaagacatatgcttgttccacagatagcagcaagcgtccatgtatagcaccag 664
             |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 65131 acctgacgaagacaaatgcttgttccacaaagagcagcaagtgtccatgtatagcaccag 65072

                                        
Query: 665   ccgttgcagtggaacatcggcaaagtc 691
             || || |||||||||||||||||||||
Sbjct: 65071 ccattacagtggaacatcggcaaagtc 65045



 Score =  119 bits (60), Expect = 1e-23
 Identities = 222/276 (80%)
 Strand = Plus / Minus

                                                                         
Query: 334   gtcccactctggcttccatgcacacaccgtagatggcccatatgtctccgagaggccata 393
             ||||||||| |||||||| || |||||||| || || || || ||||| || || || ||
Sbjct: 66242 gtcccactccggcttccacgcgcacaccgtggacgggccgtacgtctcggacagcccgta 66183

                                                                         
Query: 394   cgtatgagagacacggaaaccgagcttcgacattgcggcaaggactgagggcggtggggc 453
              || || | ||  |||||||||||||||||||| |  || || || || ||||| || ||
Sbjct: 66182 ggtgtgggtgatgcggaaaccgagcttcgacatggacgcgagcaccgacggcggcggcgc 66123

                                                                         
Query: 454   agcgccagcagtcatgacatcgacaacgcgaggcagcgggagaatggtgtcaactggagg 513
              ||||| || |||||||| | ||| || || ||||| ||||| |||| |||| | || ||
Sbjct: 66122 ggcgccggcggtcatgacgttgacgacacgcggcagggggaggatggcgtcagccggcgg 66063

                                                                         
Query: 514   ggcgttgatgatggtgttgagcacaactggcgccccacagaagtgagttactccttggtt 573
              ||||||| |||||||||||| ||||| || || ||||||||||| || || ||||||||
Sbjct: 66062 agcgttgacgatggtgttgaggacaaccggtgcaccacagaagtgggtcacgccttggtt 66003

                                                 
Query: 574   ggctatcgctgagaagatagccttcgctgtgacctg 609
             ||||||||| |||||||| ||||| ||||| |||||
Sbjct: 66002 ggctatcgccgagaagatggcctttgctgtaacctg 65967



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 254   tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 313
             ||||||||||||||  |||| ||||||||||| || || ||||| |||||||||||||||
Sbjct: 58640 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 58581

                     
Query: 314   tgctcgtc 321
             ||||||||
Sbjct: 58580 tgctcgtc 58573
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  240 bits (121), Expect = 5e-60
 Identities = 214/245 (87%)
 Strand = Plus / Plus

                                                                            
Query: 77       gctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgc 136
                ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |||
Sbjct: 10786120 gctcacatcctgctcttccggaccgggcccaattccttggccttggccctcagctcgtgc 10786179

                                                                            
Query: 137      ttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggacc 196
                ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 10786180 ttcttgatcttccccgtcgccgtcttgggcagcggcccgaacacgacggacttgggcacc 10786239

                                                                            
Query: 197      cagtagcccggcaggcgctcgcggcagaacttgatcacgttagcagccattgctgcttcg 256
                ||||| |||||||| | ||| |||||||||   || | ||   | || | ||| || |||
Sbjct: 10786240 cagtaccccggcagcctctcccggcagaaccgcatgatgtcgccggcgagtgccgcctcg 10786299

                                                                            
Query: 257      tcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccactgc 316
                |||||||||||  ||||||||||| |||| || || ||||||||||||||||||||||||
Sbjct: 10786300 tcggagctgtcggcgccgtccttgggcgtcacgaacgcgcatggcgactccccccactgc 10786359

                     
Query: 317      tcgtc 321
                |||||
Sbjct: 10786360 tcgtc 10786364



 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Plus

                                                                            
Query: 76       agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 135
                |||||||||||||||||||  ||| ||||| || ||||||||||| |  |||||||| ||
Sbjct: 10794170 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 10794229

                                                                            
Query: 136      cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 195
                |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 10794230 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 10794289

                              
Query: 196      ccagtagcccggca 209
                |||||| |||||||
Sbjct: 10794290 ccagtaccccggca 10794303



 Score =  125 bits (63), Expect = 2e-25
 Identities = 81/87 (93%)
 Strand = Plus / Plus

                                                                            
Query: 605      acctgacgaagacatatgcttgttccacagatagcagcaagcgtccatgtatagcaccag 664
                |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 10787857 acctgacgaagacaaatgcttgttccacaaagagcagcaagtgtccatgtatagcaccag 10787916

                                           
Query: 665      ccgttgcagtggaacatcggcaaagtc 691
                || || |||||||||||||||||||||
Sbjct: 10787917 ccattacagtggaacatcggcaaagtc 10787943



 Score =  119 bits (60), Expect = 1e-23
 Identities = 222/276 (80%)
 Strand = Plus / Plus

                                                                            
Query: 334      gtcccactctggcttccatgcacacaccgtagatggcccatatgtctccgagaggccata 393
                ||||||||| |||||||| || |||||||| || || || || ||||| || || || ||
Sbjct: 10786746 gtcccactccggcttccacgcgcacaccgtggacgggccgtacgtctcggacagcccgta 10786805

                                                                            
Query: 394      cgtatgagagacacggaaaccgagcttcgacattgcggcaaggactgagggcggtggggc 453
                 || || | ||  |||||||||||||||||||| |  || || || || ||||| || ||
Sbjct: 10786806 ggtgtgggtgatgcggaaaccgagcttcgacatggacgcgagcaccgacggcggcggcgc 10786865

                                                                            
Query: 454      agcgccagcagtcatgacatcgacaacgcgaggcagcgggagaatggtgtcaactggagg 513
                 ||||| || |||||||| | ||| || || ||||| ||||| |||| |||| | || ||
Sbjct: 10786866 ggcgccggcggtcatgacgttgacgacacgcggcagggggaggatggcgtcagccggcgg 10786925

                                                                            
Query: 514      ggcgttgatgatggtgttgagcacaactggcgccccacagaagtgagttactccttggtt 573
                 ||||||| |||||||||||| ||||| || || ||||||||||| || || ||||||||
Sbjct: 10786926 agcgttgacgatggtgttgaggacaaccggtgcaccacagaagtgggtcacgccttggtt 10786985

                                                    
Query: 574      ggctatcgctgagaagatagccttcgctgtgacctg 609
                ||||||||| |||||||| ||||| ||||| |||||
Sbjct: 10786986 ggctatcgccgagaagatggcctttgctgtaacctg 10787021



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                            
Query: 254      tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 313
                ||||||||||||||  |||| ||||||||||| || || ||||| |||||||||||||||
Sbjct: 10794348 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 10794407

                        
Query: 314      tgctcgtc 321
                ||||||||
Sbjct: 10794408 tgctcgtc 10794415



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 661     ccagccgttgcagtggaacatcggcaaagtc 691
               ||||||||||||||||||||| |||| ||||
Sbjct: 1867567 ccagccgttgcagtggaacatgggcacagtc 1867597



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 658     gcaccagccgttgcagtggaacatcggca 686
               |||||| ||||||||||||||||| ||||
Sbjct: 1863638 gcaccacccgttgcagtggaacatgggca 1863666
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>dbj|AK101765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064F11, full
            insert sequence
          Length = 1929

 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                        
Query: 76   agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 135
            |||||||||||||||||||  ||| ||||| || ||||||||||| |  |||||||| ||
Sbjct: 1831 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 1772

                                                                        
Query: 136  cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 195
            |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1771 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 1712

                          
Query: 196  ccagtagcccggca 209
            |||||| |||||||
Sbjct: 1711 ccagtaccccggca 1698



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 254  tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 313
            ||||||||||||||  |||| ||||||||||| || || ||||| |||||||||||||||
Sbjct: 1653 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 1594

                    
Query: 314  tgctcgtc 321
            ||||||||
Sbjct: 1593 tgctcgtc 1586
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>gb|BT017847.1| Zea mays clone EL01N0510F04.c mRNA sequence
          Length = 1087

 Score =  103 bits (52), Expect = 8e-19
 Identities = 113/132 (85%), Gaps = 1/132 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  ctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgct 137
           |||||||||||||||||  | | ||||| || || |||||| | || |||||||| ||||
Sbjct: 906 ctcacatcctgctcttcttg-cggggccgagctctttggccctggccctcagctcgtgct 848

                                                                       
Query: 138 tcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggaccc 197
           |||||||||| ||||| ||||||||||||||||||||||| |  || |||||||| ||||
Sbjct: 847 tcttgatcttccccgtggccgtcttgggcagcggcccgaagatgaccgacttgggcaccc 788

                       
Query: 198 agtagcccggca 209
           |||| |||||||
Sbjct: 787 agtaccccggca 776



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 272 ccgtccttgagcgtgacaaaggcgcatggcgactccccccactgctcgtc 321
           |||||||||||||| || || ||||| |||||||| |||||| |||||||
Sbjct: 707 ccgtccttgagcgtcacgaacgcgcacggcgactcgccccaccgctcgtc 658
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>gb|AY107917.1| Zea mays PCO071987 mRNA sequence
          Length = 1735

 Score =  103 bits (52), Expect = 8e-19
 Identities = 112/132 (84%)
 Strand = Plus / Minus

                                                                        
Query: 78   ctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgct 137
            |||||||||||||||||   || ||||| || || |||||  | || |||||||| ||||
Sbjct: 1516 ctcacatcctgctcttcttcacagggccgagctctttggctctggccctcagctcgtgct 1457

                                                                        
Query: 138  tcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggaccc 197
            |||||||||| ||||| ||||||||||||||||||||||| |  || |||||||| ||||
Sbjct: 1456 tcttgatcttccccgtggccgtcttgggcagcggcccgaagatgaccgacttgggcaccc 1397

                        
Query: 198  agtagcccggca 209
            |||| |||||||
Sbjct: 1396 agtaccccggca 1385



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                       
Query: 605 acctgacgaagacatatgcttgttccacagatagcagcaagcgtccatgtatagcaccag 664
           ||||| |||||||||||||||||||| ||||  || || |||| ||| || |||||||| 
Sbjct: 613 acctggcgaagacatatgcttgttccgcagaacgctgccagcgcccaagtgtagcaccaa 554

                                      
Query: 665 ccgttgcagtggaacatcggcaaagtc 691
           || ||||| |||||||| |||| ||||
Sbjct: 553 ccattgcaatggaacatgggcagagtc 527



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 272  ccgtccttgagcgtgacaaaggcgcatggcgactccccccactgctcgtc 321
            |||||||||||||| || || ||||| |||||||| |||||| |||||||
Sbjct: 1316 ccgtccttgagcgtcacgaacgcgcacggcgactcgccccaccgctcgtc 1267
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>gb|AE004836.1| Pseudomonas aeruginosa PAO1, section 397 of 529 of the complete
            genome
          Length = 11127

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 646  cgtccatgtatagcaccagccgttgcagtggaacatcggca 686
            |||||| | ||||||||||||||||||||||||||||||||
Sbjct: 4953 cgtccacggatagcaccagccgttgcagtggaacatcggca 4913
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                         
Query: 644    agcgtccatgtatagcaccagccgttgcagtggaacatcggca 686
              ||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 252185 agcgtccatgggaagcaccagccgttgcagtggaacatcggca 252143
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                              
Query: 657     agcaccagccgttgcagtggaacatcggcaa 687
               |||||||||||||||||||||||||||||||
Sbjct: 3862570 agcaccagccgttgcagtggaacatcggcaa 3862600



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||||||||
Sbjct: 2037113 agcaccagccgttgcagtggaacatcggca 2037142
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||||||||
Sbjct: 1959825 agcaccagccgttgcagtggaacatcggca 1959854
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||||||||
Sbjct: 2799016 agcaccagccgttgcagtggaacatcggca 2798987
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||||||||
Sbjct: 2380473 agcaccagccgttgcagtggaacatcggca 2380444



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     gtcttgggcagcggcccgaa 177
               ||||||||||||||||||||
Sbjct: 2381323 gtcttgggcagcggcccgaa 2381304
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                            
Query: 657    agcaccagccgttgcagtggaacatcggca 686
              ||||||||||||||||||||||||||||||
Sbjct: 981250 agcaccagccgttgcagtggaacatcggca 981221
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||||||||
Sbjct: 3067250 agcaccagccgttgcagtggaacatcggca 3067279
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||||||||
Sbjct: 1501137 agcaccagccgttgcagtggaacatcggca 1501166
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                               
Query: 656     tagcaccagccgttgcagtggaacatcggcaa 687
               |||||||||||||||||||||||||| |||||
Sbjct: 4029335 tagcaccagccgttgcagtggaacattggcaa 4029304



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 661     ccagccgttgcagtggaacatcggcaa 687
               |||||||||||||||||||||||||||
Sbjct: 3185077 ccagccgttgcagtggaacatcggcaa 3185051
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 656     tagcaccagccgttgcagtggaacatcggca 686
               |||||||||||||||||||||||||| ||||
Sbjct: 2416686 tagcaccagccgttgcagtggaacattggca 2416716
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>gb|AF241171.1|AF241171 Pseudomonas aeruginosa pathogenicity island PAGI-1 gene, complete
             sequence
          Length = 51300

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 661   ccagccgttgcagtggaacatcggcaa 687
             |||||||||||||||||||||||||||
Sbjct: 12124 ccagccgttgcagtggaacatcggcaa 12098
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||| ||||||||||
Sbjct: 3036728 agcaccagccgttgcagtgaaacatcggca 3036757
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||| ||||||||||
Sbjct: 2938777 agcaccagccgttgcagtgaaacatcggca 2938806
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||| ||||
Sbjct: 2819757 agcaccagccgttgcagtggaacatgggca 2819728



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||| ||||
Sbjct: 2679318 agcaccagccgttgcagtggaacatgggca 2679347
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               |||||||||||||||| |||||||||||||
Sbjct: 5000151 agcaccagccgttgcaatggaacatcggca 5000122
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||||||| ||||
Sbjct: 1426283 agcaccagccgttgcagtggaacatgggca 1426312
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 657     agcaccagccgttgcagtggaacatcggca 686
               |||||||||||||||| |||||||||||||
Sbjct: 2045020 agcaccagccgttgcaatggaacatcggca 2045049
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>ref|NM_183955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1794

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 658 gcaccagccgttgcagtggaacatcggca 686
           |||||| ||||||||||||||||||||||
Sbjct: 774 gcaccacccgttgcagtggaacatcggca 746
to top
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 655    atagcaccagccgttgcagtggaacatcggcaa 687
              |||||||||||| ||||||||||||| ||||||
Sbjct: 252158 atagcaccagccattgcagtggaacagcggcaa 252190



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 657    agcaccagccgttgcagtggaacatcggca 686
              |||||||||| ||||||||||||| |||||
Sbjct: 616904 agcaccagccattgcagtggaacagcggca 616933



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 286    gacaaaggcgcatggcgactccccccactgctcgtc 321
              ||||||||||||||||| ||| |||||  |||||||
Sbjct: 616167 gacaaaggcgcatggcgtctctccccaacgctcgtc 616202
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 659     caccagccgttgcagtggaacatcggcaa 687
               ||||| |||||||||||||||||||||||
Sbjct: 1949691 caccaaccgttgcagtggaacatcggcaa 1949663
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 658      gcaccagccgttgcagtggaacatcggca 686
                |||||| ||||||||||||||||||||||
Sbjct: 13523621 gcaccacccgttgcagtggaacatcggca 13523593
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>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1045F02
          Length = 215378

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 658   gcaccagccgttgcagtggaacatcggca 686
             |||||| ||||||||||||||||||||||
Sbjct: 77581 gcaccacccgttgcagtggaacatcggca 77553
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 644     agcgtccatgtatagcaccagccgttgcagtggaacatcgg 684
               |||||||| | | |||||||||| |||||||||||||||||
Sbjct: 6029659 agcgtccacggaaagcaccagccattgcagtggaacatcgg 6029619



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 661     ccagccgttgcagtggaacatcggca 686
               ||||||||||||||||||||| ||||
Sbjct: 5734175 ccagccgttgcagtggaacatgggca 5734150
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>dbj|AK063921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B10, full
           insert sequence
          Length = 2024

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 658 gcaccagccgttgcagtggaacatcggca 686
           |||||| ||||||||||||||||||||||
Sbjct: 845 gcaccacccgttgcagtggaacatcggca 817
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 659    caccagccgttgcagtggaacatcggca 686
              ||||||||||||||||| ||||||||||
Sbjct: 707555 caccagccgttgcagtgaaacatcggca 707528
to top
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0043I04, complete sequence
          Length = 145191

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 661    ccagccgttgcagtggaacatcgg 684
              ||||||||||||||||||||||||
Sbjct: 128524 ccagccgttgcagtggaacatcgg 128547
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 661      ccagccgttgcagtggaacatcgg 684
                ||||||||||||||||||||||||
Sbjct: 21782504 ccagccgttgcagtggaacatcgg 21782527
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 661   ccagccgttgcagtggaacatcgg 684
             ||||||||||||||||||||||||
Sbjct: 82822 ccagccgttgcagtggaacatcgg 82845
to top
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 661   ccagccgttgcagtggaacatcggcaaagtc 691
             ||||||||||||||||||||| |||| ||||
Sbjct: 92431 ccagccgttgcagtggaacatgggcacagtc 92461



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 658   gcaccagccgttgcagtggaacatcggca 686
             |||||| ||||||||||||||||| ||||
Sbjct: 88502 gcaccacccgttgcagtggaacatgggca 88530
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>gb|AY502075.1| Rhodococcus sp. DK17 plasmid pDK2, partial sequence
          Length = 37218

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 665   ccgttgcagtggaacatcggcaa 687
             |||||||||||||||||||||||
Sbjct: 11022 ccgttgcagtggaacatcggcaa 11000
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>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence
          Length = 210205

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 665    ccgttgcagtggaacatcggcaa 687
              |||||||||||||||||||||||
Sbjct: 166857 ccgttgcagtggaacatcggcaa 166879
to top
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
              complete sequence
          Length = 122218

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 661    ccagccgttgcagtggaacatcggcaaagtc 691
              ||||||||||||||||||||| |||| ||||
Sbjct: 107842 ccagccgttgcagtggaacatgggcacagtc 107812



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 658    gcaccagccgttgcagtggaacatcggca 686
              |||||| ||||||||||||||||| ||||
Sbjct: 111771 gcaccacccgttgcagtggaacatgggca 111743
to top
>dbj|AB107790.2| Rhodococcus sp. RHA1 bphB1, bphS, bphT for
            cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase, sensor
            kinase, response regulator, partial and complete cds
          Length = 8801

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 665  ccgttgcagtggaacatcggcaa 687
            |||||||||||||||||||||||
Sbjct: 7659 ccgttgcagtggaacatcggcaa 7681
to top
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 657   agcaccagccgttgcagtggaacatcggca 686
             ||||||| |||||||||||||| |||||||
Sbjct: 12661 agcaccaaccgttgcagtggaatatcggca 12690
to top
>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence
          Length = 232850

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 340    ctctggcttccatgcacacacc 361
              ||||||||||||||||||||||
Sbjct: 154211 ctctggcttccatgcacacacc 154232
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>ref|XM_463896.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1967

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 658 gcaccagccgttgcagtggaacatcggca 686
           |||||| ||||||||||||||||| ||||
Sbjct: 867 gcaccacccgttgcagtggaacatgggca 839
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>gb|AY458630.1| Uncultured bacterium 106 clone EBAC750-01B07 genomic sequence
          Length = 43887

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 659 caccagccgttgcagtggaacatcggcaaagtc 691
           |||||||||||||| || |||||||||| ||||
Sbjct: 983 caccagccgttgcaatgaaacatcggcagagtc 951
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>emb|AL929089.5| Mouse DNA sequence from clone RP24-402O2 on chromosome 11 Contains a
             novel gene (1700106J16Rik), complete sequence
          Length = 71354

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   ctctggcttccatgcacacac 360
             |||||||||||||||||||||
Sbjct: 49353 ctctggcttccatgcacacac 49333
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 658     gcaccagccgttgcagtggaacatcggca 686
               |||||| ||||||||||||||||| ||||
Sbjct: 1015073 gcaccacccgttgcagtggaacatgggca 1015045
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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBb0088N06
          Length = 123454

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 658  gcaccagccgttgcagtggaacatcggca 686
            |||||| ||||||||||||||||| ||||
Sbjct: 3781 gcaccacccgttgcagtggaacatgggca 3753
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>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1217_F02
          Length = 118822

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 658   gcaccagccgttgcagtggaacatcggca 686
             |||||| ||||||||||||||||| ||||
Sbjct: 86492 gcaccacccgttgcagtggaacatgggca 86464
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>dbj|AK066406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060C21, full
           insert sequence
          Length = 1949

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 658 gcaccagccgttgcagtggaacatcggca 686
           |||||| ||||||||||||||||| ||||
Sbjct: 802 gcaccacccgttgcagtggaacatgggca 774
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>gb|AC133425.3| Rattus norvegicus 7 BAC CH230-333I12 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 64809

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   tctggcttccatgcacacac 360
             ||||||||||||||||||||
Sbjct: 16198 tctggcttccatgcacacac 16217
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 659    caccagccgttgcagtggaa 678
              ||||||||||||||||||||
Sbjct: 283517 caccagccgttgcagtggaa 283498
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>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence
          Length = 188691

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 615    gacatatgcttgttccacag 634
              ||||||||||||||||||||
Sbjct: 157936 gacatatgcttgttccacag 157955
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>gb|AC119176.10| Mus musculus chromosome 1, clone RP24-359F24, complete sequence
          Length = 208009

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 615   gacatatgcttgttccacag 634
             ||||||||||||||||||||
Sbjct: 52828 gacatatgcttgttccacag 52847
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>emb|BX784394.3| Zebrafish DNA sequence from clone CH211-150C22 in linkage group 20,
            complete sequence
          Length = 58454

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 557  tgagttactccttggttggctatc 580
            |||||||||| |||||||||||||
Sbjct: 5053 tgagttactctttggttggctatc 5076
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 126     tcagctcatgcttcttgatc 145
               ||||||||||||||||||||
Sbjct: 1357986 tcagctcatgcttcttgatc 1357967
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>emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chromosome 11, complete
              sequence
          Length = 216303

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    tgtcccactctggcttccat 352
              ||||||||||||||||||||
Sbjct: 144475 tgtcccactctggcttccat 144494
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>dbj|AB016845.1| Streptomyces thermoviolaceus NagR gene, complete cds
          Length = 1300

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ccggcaggcgctcgcggcag 223
           ||||||||||||||||||||
Sbjct: 840 ccggcaggcgctcgcggcag 859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,209,605
Number of Sequences: 3902068
Number of extensions: 4209605
Number of successful extensions: 70975
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69686
Number of HSP's gapped (non-prelim): 1284
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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