>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 37/71 (52%)
 Frame = -2

Query: 622 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSR 443
           M+R  + PD   ++ ++ A+ + G++D+ M  + + R+ G   +    G ++G+ CK+ R
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 442 FNDLIQLLRDM 410
             D +     M
Sbjct: 422 VEDAMLYFEQM 432



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/87 (24%), Positives = 36/87 (41%)
 Frame = -2

Query: 601 PDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQL 422
           PD VSYT ++  F + G+ D+    Y E  + G   D      ++   CK    +  +++
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 421 LRDMKVQDTQLDRRLYMIVLNSLREAG 341
           L  M       D   Y  +L+    +G
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSG 280



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 18/89 (20%), Positives = 46/89 (51%)
 Frame = -2

Query: 607 VQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLI 428
           V PD ++Y  I+    ++       + Y    E+G  ++ +   +++   CK    +D +
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 427 QLLRDMKVQDTQLDRRLYMIVLNSLREAG 341
           Q+ +++ + D +L+ R + I++++L + G
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVG 665



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 22/104 (21%), Positives = 44/104 (42%)
 Frame = -2

Query: 622 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSR 443
           M++  V PD ++Y +I+  +  SG+    + + ++ R  G   D     L++   CK  R
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 442 FNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAGLEVHVRWLQD 311
             +  ++   M  +  + +   Y  +L      G  V +  L D
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 360



 Score = 33.5 bits (75), Expect = 0.52
 Identities = 16/89 (17%), Positives = 46/89 (51%)
 Frame = -2

Query: 622 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSR 443
           M ++ + P+ V+Y A++G   +SG ++  M Y+++  + G +    +   ++   C  ++
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 442 FNDLIQLLRDMKVQDTQLDRRLYMIVLNS 356
           +    +L+ +M  +   L+   +  +++S
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDS 485

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -2

Query: 616 RRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFN 437
           RR ++ D  ++T IV    R+G+  R  +++    E G  ++      +V   CK    +
Sbjct: 321 RRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVD 380

Query: 436 DLIQLLRDMKVQD 398
             ++    M+V+D
Sbjct: 381 RAMRYFESMEVKD 393

>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
 Frame = +2

Query: 263  NSWSVKSGFLLHGIEVILEPPDMNLQPGFSEAVENDHVQPP------------------V 388
            N W+ +SGFL HG+     P    ++P    A     +QPP                  V
Sbjct: 841  NQWTEQSGFLPHGV-----PSSGYMRPPCKSA--GHRLQPPPVPAPSSLFGAPAQALRGV 893

Query: 389  QLGVLHLHVPE-----QLDEVVEPAGFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELP 553
            Q G   +  PE     QL   V P G   HPH  A   L   P   P++   +   V  P
Sbjct: 894  QGGDSMMDSPEMIAMQQLSSRVCPPGVPYHPHQPAHPRL---PGPFPQVAHPMSVTVSAP 950

Query: 554  RP 559
            +P
Sbjct: 951  KP 952

>PTPR2_HUMAN (Q92932) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (Islet cell autoantigen-related
           protein) (ICAAR) (IAR) (Phogrin)
          Length = 1015

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +2

Query: 332 NLQPGFSEAVENDHVQPPVQLGVLHLHVPEQLDEVVEPAGFAEHPHHEAGQG------LV 493
           +L P     ++ D + P V  GV   H+   L      A  A+ P    G+G      L+
Sbjct: 215 DLLPRTLGQLQPDELSPKVDSGVDRHHLMAALS-----AYAAQRPPAPPGEGSLEPQYLL 269

Query: 494 HRPSRLPELLVVVHAPVELPRPVERADD 577
             PSR+P  L+   AP + P P+  ++D
Sbjct: 270 RAPSRMPRPLLAPAAPQKWPSPLGDSED 297

>MA2B2_MOUSE (O54782) Epididymis-specific alpha-mannosidase precursor (EC|
           3.2.1.24) (Mannosidase alpha class 2B member 2)
          Length = 1018

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 269 WSVKSGFLLHGIEVILEPPDMNLQPGFSEAVENDHVQPPVQLGVLHLHVPEQLDEVVEPA 448
           +S +SGF  +G+ V  EPP   + P  SE         PV    +HL+    +  V + A
Sbjct: 224 FSNRSGFYWNGVAVFPEPPPDGVYPNMSE---------PVTGANIHLYAEALVANVKQRA 274

Query: 449 GFAEHPH 469
            +   PH
Sbjct: 275 AWFRTPH 281

>GCP_STRCO (O86793) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)|
           (Glycoprotease)
          Length = 374

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 446 PVQRPHPAAQGHEGAGHPAGQEAVHDRSQQ 357
           PV  PH   QGH   GHP G + VH+ S++
Sbjct: 342 PVTEPHVPGQGHPH-GHPHGHDHVHEVSKE 370

>HMEN_DROVI (P09145) Segmentation polarity homeobox protein engrailed|
          Length = 584

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
 Frame = +2

Query: 230 PHAPMLKMSTRNSWSVKSGFLLHGIEVILEPPDMNLQPGFSEAVENDHVQPPVQLGVLHL 409
           PH+P      ++   ++    +H I + +   DM+LQPG +      + Q  +Q    HL
Sbjct: 20  PHSP----PQQHQHILQPNLRIHAIPISITALDMSLQPGTAATAATLYQQQQLQ----HL 71

Query: 410 HVPEQL-----DEVVEPAGFAEHPHHEA 478
           H  +QL      ++   AG   HP   A
Sbjct: 72  HQLQQLQQLHQQQLAASAGVFHHPSTSA 99

>SYT_BUCAP (P46244) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 642

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 40  RIIELYSLSGKSGIRSFWWYNGAIFYNTFTVSISSRFKEHGGKQIFT 180
           +++ LY +  +S    FW  NG I +N   + +  + KE+  K++ T
Sbjct: 249 KLLNLYHMQKESPGMIFWHNNGWIIFNELEIFVREKLKEYKYKEVKT 295

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = -2

Query: 616  RRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFN 437
            R  V+P    Y A++    R+     C   +QE +E+G        G ++   C+    +
Sbjct: 919  RHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDES 978

Query: 436  DLIQLLRDMKVQ 401
               +L  +M+ Q
Sbjct: 979  LAEKLFAEMENQ 990

>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 170  KYLPILLQIYRAVPFSRHPNPHAPM 244
            KYLP    I+R VP S  P P +PM
Sbjct: 7316 KYLPFEFMIFRKVPKSAQPEPPSPM 7340

>FMT_IDILO (Q5QXI6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 316

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 410 HVPEQLDEVVEPAGFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELPRPVERADD 577
           H+ + LDE  +  G    P   AG+G   +PS + +L +    PV  P  ++  +D
Sbjct: 15  HLQQLLDESHQVVGVYTQPDRPAGRGKKPQPSAVKKLALEHQLPVYQPESLKSEED 70

>VE8_BPV4 (P08352) Hypothetical protein E8|
          Length = 52

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
 Frame = +3

Query: 72  IWNQIILVVQWCHF------LQY-IYSVNFFTIQGAWRQANIYLFCFKF 197
           +W   +L++ WC F        Y + SVNF+     W   N YL C  F
Sbjct: 3   LWLIYVLLLFWCAFNFCTVICNYCVPSVNFYYYSVRWMGLNFYLLCLLF 51

>Y48K_ELV (P35929) Hypothetical 48 kDa protein|
          Length = 440

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = +1

Query: 139 SSRFKEHGGKQIFTYFASNLQSSAFLQTPKSSCSDAEDEHQELVEREIRFSPPRN*SNPG 318
           S RF      ++F         +  L  PK +C  A+      +   +  SPPR   NPG
Sbjct: 17  SPRFNLGSSSRLFCESTPIFIGTIPLHCPKGTCPPAQSHGHSSLRTNLNSSPPRCPQNPG 76

Query: 319 AT*HEPPARLLG 354
               EP  + LG
Sbjct: 77  T---EPSLQPLG 85

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
 Frame = -2

Query: 622 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFR----ETGGTVDKTLAGLMVGVFC 455
           +   ++QP   +YTA++G   R G L +    Y + +    E        L  +      
Sbjct: 162 LKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPW 221

Query: 454 KTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAGLEVHVRWLQDYFNSVEEK 287
           K S     ++L + ++ ++ +L+ + Y  +   L+ A     +R   D F  +  K
Sbjct: 222 KDSALQSALKLRQQLQAKNFELNLKTYHAL---LKMAAKCADLRMCLDVFKEIIHK 274

>N4BP3_MOUSE (Q8C7U1) NEDD4-binding protein 3 (N4BP3)|
          Length = 537

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -1

Query: 386 QEAVHDRSQQPPRSRAGGSCQV----APGLLQFRGG 291
           +EAVH   +Q PR  A GSC+     + GLL   GG
Sbjct: 416 REAVHSLQEQAPREEAPGSCETDDCKSRGLLGEAGG 451

>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14)
          Length = 1636

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 184 FASNLQS--SAFLQTPKSSCSDAEDEHQELVEREIRFSPP 297
           F ++L+S  +A L+  +S+C   E   Q+L++RE++  PP
Sbjct: 678 FYADLESKVAALLERTQSTCQAREAARQQLLDRELKKKPP 717

>DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 1219

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 419 EQLDEVVEPA-GFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELPR----PVERADDGR 583
           E L +VV+P  G  E    E G   VHRPS  P   +VVHA  ++ R     VE  D+G 
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLN-VHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420

Query: 584 V 586
           V
Sbjct: 421 V 421

>CD014_MOUSE (Q9JJG9) Protein C4orf14 homolog|
          Length = 693

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 422 AQGHEGAGHPAGQEAVHDRSQQPPRSRA 339
           A GH+G  +PAG E + +   Q P SR+
Sbjct: 281 APGHQGPQYPAGDEPLEEIKNQNPSSRS 308

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -1

Query: 446 PVQRPHPAAQGHEGAGHPAGQEAVH----DRSQQPPRSRAGGSCQVAPGLLQFRG 294
           P QR  P  QGH GA  P G   ++     + +  P    G     APGL+  RG
Sbjct: 365 PGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG-----APGLMGARG 414

>GLGA_CHLCV (Q821W4) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 475

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 514 RETGGTVDKTLAGLMVGVFCKTSRFNDLIQLL 419
           R TGG  D  + G+    F +T  FND + +L
Sbjct: 401 RSTGGLADTVVTGINGFTFSQTDNFNDFLHML 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,210,128
Number of Sequences: 219361
Number of extensions: 2024103
Number of successful extensions: 6398
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6389
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)