>KC1D_ARATH (P42158) Casein kinase I isoform delta-like (EC 2.7.11.1)|
           (CKI-delta)
          Length = 450

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
 Frame = -3

Query: 616 RPDLSAPKEAVLSSSTFLGRSGVFSRR-PAVSSSRD-LPSSEAEPSRSRAPDVSPGTFQR 443
           +P  S+ +++++ SS+   +S   SRR  AVS SRD  P SE    RSR  DVS G   R
Sbjct: 358 QPTSSSARDSMIPSSSLFAQSAGSSRRVTAVSGSRDNFPGSEELLQRSRTGDVSRGVIPR 417

Query: 442 NSAPRRASHTLDYSDPRHKSISNNYESTIRGIQGL 338
           NS P  A           KS   +YES ++GI  L
Sbjct: 418 NS-PGEAG----------KSTRRHYESVVKGIDNL 441

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = -3

Query: 622 PVRPDLSAPKEAVLSSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQR 443
           PV    +    A ++SST    S   +     SSS  + SS  E S +  P  S  T + 
Sbjct: 409 PVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTES 468

Query: 442 NSAPRRASHTLDYSDPRHKSISNNYEST 359
           +SAP  +S T   S P     S+  ES+
Sbjct: 469 SSAPVTSSTTESSSAPVPTPSSSTTESS 496



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = -3

Query: 580 SSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYS 401
           SSST    S   +     SSS  + SS  E S +  P  S  T + +SAP  +S T   S
Sbjct: 360 SSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSS 419

Query: 400 DPRHKSISNNYESTI 356
            P   S + +  + +
Sbjct: 420 APVTSSTTESSSAPV 434



 Score = 30.0 bits (66), Expect = 5.8
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = -3

Query: 622 PVRPDLSAPKEAVLSSSTFLGRSGVF---SRRPAVSSSRDLPSSEAEPSRSRAPDVSPGT 452
           PV    +    A ++SST    S      S     SSS  + SS  E S +  P  S  T
Sbjct: 433 PVTSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSST 492

Query: 451 FQRNSAPRRASHTLDYSDPRHKSISNNYEST 359
            + +SAP  +S T   S P     S+  ES+
Sbjct: 493 TESSSAPVTSSTTESSSAPVPTPSSSTTESS 523



 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = -3

Query: 580 SSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYS 401
           SSST    S   +     SSS  +P+  +  + S +  V+  T + +SAP  +S T   S
Sbjct: 333 SSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVTSSTTESSS 392

Query: 400 DPRHKSISNNYEST 359
            P     S+  ES+
Sbjct: 393 APVPTPSSSTTESS 406

>CCNL2_XENTR (Q5BKF8) Cyclin-L2|
          Length = 497

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 29/101 (28%), Positives = 44/101 (43%)
 Frame = -3

Query: 616 RPDLSAPKEAVLSSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQRNS 437
           RP  S+P    +S      RSG  SR  + S S+   S    P R ++   SP +  ++ 
Sbjct: 344 RPTSSSPVNGRVSKGRD-SRSGSRSRDQSYSRSQ---SRSQSPKRRKSQSYSPSSDSKSR 399

Query: 436 APRRASHTLDYSDPRHKSISNNYESTIRGIQGLNFDANDRG 314
           +P R+        P HK    +Y+ST   + G N D   +G
Sbjct: 400 SPSRSRS----DSPPHKPNHGSYKSTKGHVYGNNSDYKYQG 436

>AVRD1_PSESG (Q8RK06) Effector protein AvrPphDPgy|
          Length = 698

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 25/62 (40%), Positives = 30/62 (48%)
 Frame = -3

Query: 622 PVRPDLSAPKEAVLSSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQR 443
           P  P       +VLS  T LG S V S + AV SS  L SS   P  SR P    G+ +R
Sbjct: 141 PSPPPAHGSASSVLSERTHLGMSRVLS-QDAVDSSSPLLSS---PDHSRPPSQHIGSVRR 196

Query: 442 NS 437
           +S
Sbjct: 197 DS 198

>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus|
           (Acinus)
          Length = 1338

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
 Frame = -3

Query: 526 SSSRDLPSSEAEPSRSRAPDV-------SPGTFQRNSA-----------PRRASHTLDYS 401
           SS    PSS + PSRS +PD        SPG+ QR+ A           P+  S +   S
Sbjct: 578 SSRSSSPSSSSSPSRSPSPDSVASRPQSSPGSKQRDGAQARVHANPHERPKMGSRSTSES 637

Query: 400 DPRHKSISNNYESTIR 353
             R +S S +  S+ R
Sbjct: 638 RSRSRSRSRSASSSSR 653

>DKC1_CHICK (Q5ZJH9) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin)
          Length = 516

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 230 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 123
           + L + A++S   H V+ K+    + +  YP+KWGL
Sbjct: 345 IALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380

>CLPP1_MYXXA (O30612) ATP-dependent Clp protease proteolytic subunit 1 (EC|
           3.4.21.92) (Endopeptidase Clp 1)
          Length = 203

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 582 CPVRLFWVGQACSQGDLLFLVAEICQAVKL-NHRVVVHQ 469
           CPV    VGQA S G LL L     +   L N R+++HQ
Sbjct: 85  CPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQ 123

>DKC1_RAT (P40615) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin) (Nucleolar protein family A member 4) (snoRNP
           protein DKC1) (Nopp140-associated protein of 57 kDa)
           (Nucleolar protein NAP57)
          Length = 508

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 230 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 123
           + L + A++S   H V+ K+    + +  YP+KWGL
Sbjct: 347 IALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 382

>CLPP2_RHOBA (Q7UK66) ATP-dependent Clp protease proteolytic subunit 2 (EC|
           3.4.21.92) (Endopeptidase Clp 2)
          Length = 195

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 582 CPVRLFWVGQACSQGDLLFLVAEICQAVKL-NHRVVVHQ--M*VQGHSRETQLH 430
           C V  + +GQA S G +L       +   L N R+++HQ    +QG +RE ++H
Sbjct: 86  CDVATYCIGQAASMGAVLLTAGAKGKRFALPNARIMIHQPLAGMQGTAREVEIH 139

>DKC1_HUMAN (O60832) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin) (Nucleolar protein family A member 4) (snoRNP
           protein DKC1) (Nopp140-associated protein of 57 kDa)
           (Nucleolar protein NAP57) (CBF5 homolog)
          Length = 513

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 230 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 123
           + L + A++S   H ++ K+    + +  YP+KWGL
Sbjct: 346 IALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGL 381

>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)|
          Length = 630

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -3

Query: 622 PVRPDLSAPKEAVLSSSTFLGRS---GVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGT 452
           P+ P   AP+ A  SS+   G +   G F   PAV SS    + +  PS   AP   P T
Sbjct: 116 PLPPATPAPRLASTSSTVTSGAAAGAGYFDLPPAVDSSSSTYALKPIPSPVAAPSADPST 175

>DKC1_MOUSE (Q9ESX5) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Dyskerin) (Nucleolar protein family A member 4) (snoRNP
           protein DKC1) (Nopp140-associated protein of 57 kDa)
           (Nucleolar protein NAP57)
          Length = 508

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 230 VKLGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGL 123
           + L + A++S   H ++ K+    + +  YP+KWGL
Sbjct: 346 IALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGL 381

>AGUA_TRIRE (Q99024) Alpha-glucuronidase precursor (EC 3.2.1.139)|
           (Alpha-glucosiduronase) (GLRI)
          Length = 847

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 385 SISNNYESTIRGIQGLNFDANDRGARPYKA*ISLPVSSYGSYKSCIVYDLLKLNWGARPY 206
           S S+     I+GI GL+ D + RG +      S+ +S+  +Y+S       KLN     Y
Sbjct: 61  SASSELHKGIKGILGLDLDVSSRGGKHCSTQKSIVISTLDTYQSACGKLSPKLNLKEDGY 120

Query: 205 FLN 197
           +L+
Sbjct: 121 WLS 123

>PDC3_SCHPO (Q9P7P6) Probable pyruvate decarboxylase C186.09 (EC 4.1.1.1)|
          Length = 572

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 522 VAEICQAVKLNHRVVVHQM*VQGHSRETQLHGGPHTR 412
           V E+ Q V+LN  +++  +  +G++ E ++H GP+ R
Sbjct: 457 VQEVSQMVRLNLPIIMFLINNRGYTIEVEIHDGPYNR 493

>CLPP1_GLUOX (Q5FUR3) ATP-dependent Clp protease proteolytic subunit 1 (EC|
           3.4.21.92) (Endopeptidase Clp 1)
          Length = 215

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 582 CPVRLFWVGQACSQGDLLFLVAEICQAVKL-NHRVVVHQ 469
           CPV    +GQA S G LL    E      L N RV+VHQ
Sbjct: 99  CPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQ 137

>IPL1_CANAL (Q59S66) Spindle assembly checkpoint kinase (EC 2.7.11.1) (Aurora|
           kinase)
          Length = 530

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = -3

Query: 598 PKEAVLSSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGTFQRNSAPRRAS 419
           P +   SSS+    S + S  P V    + P S    + S     S   + ++SA + AS
Sbjct: 102 PTKNSSSSSSSSHSSSLLSSSPFVEEPENQPESNHTRATSHYRTTSTSQY-KSSANKDAS 160

Query: 418 HTLDYSDPRHKSISNNYEST 359
           H+L  S  R  S     EST
Sbjct: 161 HSLITSSKRKTSTKQTSEST 180

>FOXD4_MOUSE (Q60688) Forkhead box protein D4 (Forkhead-related protein FKHL9)|
           (Forkhead-related transcription factor 5) (FREAC-5)
           (Transcription factor FKH-2)
          Length = 444

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 119 QPAPISLGKQAASPLQHVACGSHGEVVQKVWPRSPI*LQQ 238
           Q  P  L  QAASPL H++ GS   + Q+  P+ P+ LQQ
Sbjct: 352 QHPPCLLHPQAASPLFHMSAGSRTILPQQ--PQPPLPLQQ 389

>GGT_PSEUA (P36267) Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)|
           [Contains: Gamma-glutamyltransferase large chain;
           Gamma-glutamyltransferase small chain]
          Length = 575

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 224 LGSEAILSELLHHVIHKLHAAAVRQPAYPKKWGLAGEIKVG 102
           LG    +   L H++ K +AA +R    P+K G++ EIK G
Sbjct: 327 LGDPDFVKNPLAHLLDKDYAAKIRAAINPQKAGISQEIKPG 367

>CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22|
          Length = 886

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
 Frame = -3

Query: 556 SGVFSRRPAVSSSRDLPS---SEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYSDPRHK 386
           +GV + +   S +R + S   S   PSRSR+P       +R+S  R  S   D S    K
Sbjct: 26  AGVTAHKRKRSPTRSVSSRSTSSRSPSRSRSPPPRSRRRRRSSRDRSQSSNSDESTEERK 85

Query: 385 SISNNYESTIRGIQGLNFDANDRGARPYKA*ISLPVSSYGSY 260
           + +   E+  +  + L   A     R   A +S    S G+Y
Sbjct: 86  NTTRAREALEQNAKTLEIAAKGEALRSTLAQLS-ATKSGGAY 126

>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = -3

Query: 544  SRRPA--VSSSRDLPSSEAEPSRSRAPDVSPGTFQRNSAPRRASHTLDYSDPRHKSISNN 371
            +RRP    SSS D   S    S+SR+P  S    +  S  R  S +  +S  R +S +++
Sbjct: 1279 NRRPRNQESSSDDQTPSRDGDSQSRSPHRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSS 1338

Query: 370  YESTIRGIQGLNFDANDRGARPYKA*ISLPVSSYGSYKS 254
            Y S     +  + D   RG    ++      SSYGS+ S
Sbjct: 1339 YRSRSYS-RSRSRDWYSRGRTRSRS------SSYGSFHS 1370

>AVRD1_PSESH (Q9F3T6) Effector protein AvrPphD|
          Length = 710

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 622 PVRPDLSAPKEAVLSSSTFLGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPD----VSPG 455
           P  P       +VLS  T LG S V S+    SSS + P   + P  SR P     V  G
Sbjct: 141 PSPPPAHGSASSVLSERTHLGMSSVLSQDAVDSSSLETP-LVSSPDHSRPPSQPKPVHIG 199

Query: 454 TFQRNS 437
           + +R+S
Sbjct: 200 SVRRDS 205

>ECM29_YEAST (P38737) Proteasome component ECM29 (Extracellular matrix protein 29)|
          Length = 1868

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -3

Query: 394  RHKSISNNYESTIRGIQGLNFDANDRGARPYKA*ISLPVSSYGSYKSC---IVYDLLKLN 224
            + K I +N    + G  GLN DA +         I L   S G+ K     ++YD + L 
Sbjct: 1269 KSKEILDNILPFLWGPHGLNSDAEEVRNFALTTLIDLVKHSPGAIKPFTPKLIYDFITLF 1328

Query: 223  WGARPYFLNYFTM*STSYMLQR*GSLLTQRNGG 125
                P  +NY  + + +Y +     + TQR  G
Sbjct: 1329 SSIEPQVINYLALNAANYNIDA-NVIDTQRKNG 1360

>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)|
          Length = 757

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -3

Query: 619 VRPDLSAPKEAVLSSSTF----LGRSGVFSRRPAVSSSRDLPSSEAEPSRSRAPDVSPGT 452
           V P  SAP + V SS +      G++G+ S+    S  +       +PS SR P VS   
Sbjct: 156 VSPQTSAPPQHVSSSVSEDVLKQGKNGITSKSEKSSVKQPGSRDIYQPSSSREPPVSSID 215

Query: 451 FQRNSAPRRA 422
            + +S+P+ A
Sbjct: 216 TRTSSSPKSA 225

>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)|
          Length = 1157

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 508 PSSEAEPSRSRAPDVSPGTFQRNSAPRRA-SHTLDYSDPRHKSIS 377
           P     P   RAP V P TF+ +S P    SHT   S P H++++
Sbjct: 792 PMPNTAPPLPRAPPVPPATFEFDSEPTATHSHTAP-SPPPHQNVT 835

>DDX28_MACFA (Q4R4T6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)|
           (Mitochondrial DEAD box protein 28)
          Length = 546

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 38  KRKTVQRQKHRPSVPF*G---CGCRRPLFRQPAPISLGKQAASPL 163
           +R++ QR   RP +   G      RRP F QPA ++LG+  ++PL
Sbjct: 48  QRQSRQRNLPRPVLARPGRLLVSARRPEFNQPARLTLGRWESAPL 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,914,280
Number of Sequences: 219361
Number of extensions: 1997255
Number of successful extensions: 5977
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5959
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)