ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isomerase... 244 3e-61
2emb|X81087.1|HVB193G H.vulgare B193 promoter sequence 100 1e-17
3gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 58 3e-05
4gb|DQ395124.1| Pichia pastoris methanol expression regulator I g... 46 0.13
5gb|AY641409.1| Hordeum vulgare subsp. vulgare retrotransposon Sa... 46 0.13
6gb|AC115410.4| Rattus norvegicus 2 BAC CH230-46P5 (Children's Ho... 44 0.52
7emb|BX511219.7| Zebrafish DNA sequence from clone DKEYP-93A3, co... 44 0.52
8ref|XM_778140.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.1
9emb|X73148.1|SGDNAORF S.griseus DNA sequence for ORF's 1-6 42 2.1
10gb|AC108777.7| Mus musculus chromosome 18, clone RP23-368H22, co... 40 8.1
11gb|AC175749.2| Pan troglodytes BAC clone CH251-1124N9 from chrom... 40 8.1
12gb|AY442436.1| Staphylococcus aureus SA0317 gene, SA0317-2 allel... 40 8.1
13gb|AY442435.1| Staphylococcus aureus SA0317 gene, SA0317-1 allel... 40 8.1
14gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, comple... 40 8.1
15emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in... 40 8.1
16gb|AC127380.4| Homo sapiens BAC clone RP11-1324J5 from UL, compl... 40 8.1
17gb|AC122884.2| Mus musculus BAC clone RP23-88O13 from 5, complet... 40 8.1
18gb|AY171025.1| Ericameria ophitidis RR163 internal transcribed s... 40 8.1
19gb|AY171015.1| Ericameria gilmanii RR251 internal transcribed sp... 40 8.1
20emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chro... 40 8.1
21emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 8.1
22emb|AL669840.5| Mouse DNA sequence from clone RP23-43J1 on chrom... 40 8.1
23gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, comple... 40 8.1
24gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complet... 40 8.1
25dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, c... 40 8.1
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 8.1
27dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 8.1
28dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 8.1
29gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 8.1
30gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 8.1
31gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 8.1
32gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, compl... 40 8.1
33gb|AC023426.29| Homo sapiens 12 BAC RP11-396L8 (Roswell Park Can... 40 8.1
34gb|AC092854.14| Homo sapiens chromosome 22 clone rp11-39n6 map 2... 40 8.1
35gb|AC010332.7|AC010332 Homo sapiens chromosome 19 clone CTD-3018... 40 8.1
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
37gb|AF547983.1| Schizosaccharomyces japonicus mitochondrial DNA, ... 40 8.1
38gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromo... 40 8.1
39gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chrom... 40 8.1
40gb|AC146179.2| Pan troglodytes BAC clone RP43-36B22 from chromos... 40 8.1
41gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chrom... 40 8.1
42gb|AC106819.3| Homo sapiens chromosome 16 clone RP11-696P19, com... 40 8.1
43gb|AC144895.2| Homo sapiens BAC clone RP11-399H16 from 2, comple... 40 8.1
44gb|AC074316.7| Staphylococcus aureus clone sabac-1, complete seq... 40 8.1
45gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, ... 40 8.1
46gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, co... 40 8.1
47gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, comple... 40 8.1
48dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 8.1
49dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
50dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 8.1
51dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
52gb|AC113288.7| Mus musculus chromosome 5, clone RP23-414I12, com... 40 8.1
53emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 8.1
54emb|BX537909.1|HSM806017 Homo sapiens mRNA; cDNA DKFZp686G074 (f... 40 8.1
55gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complet... 40 8.1
56gb|AF024501.2| Caenorhabditis elegans cosmid F39E9, complete seq... 40 8.1
57gb|M21305.1|HUMASAT3 Human alpha satellite and satellite 3 junct... 40 8.1
58emb|X83395.1|HSSAT221 H.sapiens satellite 2 DNA (L23-21) 40 8.1 
>gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isomerase (CHI) gene,
            complete cds
          Length = 11475

 Score =  244 bits (123), Expect = 3e-61
 Identities = 206/229 (89%), Gaps = 11/229 (4%)
 Strand = Plus / Plus

                                                                        
Query: 176  tgttacaaattaattagtagattaatt---caagggatatgtccaaccc-gaacagtcgt 231
            ||||| |||||||||||||||||||||   |||||||| |||||||||| ||||||||||
Sbjct: 2810 tgttagaaattaattagtagattaattagccaagggatgtgtccaaccccgaacagtcgt 2869

                                                                        
Query: 232  gtctcctctttgtgtctattgccaacaagcacctgttctgttctggagggatgcctccga 291
            ||||||||| | ||||||||||||||| |||||||||||||     ||||||||||||||
Sbjct: 2870 gtctcctctctctgtctattgccaacaggcacctgttctgt-----agggatgcctccga 2924

                                                                        
Query: 292  acagacaccttttcttcgcacctctttcagatgtatatatacttgagaatcaatagaaa- 350
            |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 2925 acagacacctcttcttcgcacctcttccagatgtatatatacttgagaatcaatagaaat 2984

                                                             
Query: 351  gaggactgctggtccattcatttccattcaatctcgttttactctaaca 399
             ||||||| | ||||||| | || |||||||||||||||||||||||||
Sbjct: 2985 caggactgatcgtccatt-actttcattcaatctcgttttactctaaca 3032
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>emb|X81087.1|HVB193G H.vulgare B193 promoter sequence
          Length = 741

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                       
Query: 310 cacctctttcagatgtatatatacttgagaatcaatagaaagaggactgctggtccattc 369
           ||||||||||||||||||||||  |||||||||||||||||  |||||  | ||||||||
Sbjct: 128 cacctctttcagatgtatatatttttgagaatcaatagaaaccggactaattgtccattc 69

                                         
Query: 370 atttccattcaatctcgttttactctaaca 399
           | || ||||||||||||||||| |||||||
Sbjct: 68  actttcattcaatctcgttttattctaaca 39
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 52    tggccgactaggccaaagtggcccagccggccacacc 88
             ||||||||| |||||||||||||| ||||||||||||
Sbjct: 41137 tggccgactgggccaaagtggccctgccggccacacc 41101
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>gb|DQ395124.1| Pichia pastoris methanol expression regulator I gene, complete cds
          Length = 3468

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 392  ctctaacacgttatcatgcactt 414
            |||||||||||||||||||||||
Sbjct: 1182 ctctaacacgttatcatgcactt 1204
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>gb|AY641409.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra2, complete
            sequence
          Length = 8027

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 54   gccgactaggccaaagtggcccagccggcca 84
            ||||||| |||||||||||||||||| ||||
Sbjct: 4603 gccgactgggccaaagtggcccagccagcca 4633
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>gb|AC115410.4| Rattus norvegicus 2 BAC CH230-46P5 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 232501

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 238   tctttgtgtctattgccaacaa 259
             ||||||||||||||||||||||
Sbjct: 86789 tctttgtgtctattgccaacaa 86768
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>emb|BX511219.7| Zebrafish DNA sequence from clone DKEYP-93A3, complete sequence
          Length = 201881

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 313   ctctttcagatgtatatatact 334
             ||||||||||||||||||||||
Sbjct: 89297 ctctttcagatgtatatatact 89318
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>ref|XM_778140.1| PREDICTED: Strongylocentrotus purpuratus similar to myosin
            phosphatase-Rho interacting protein (LOC577942), mRNA
          Length = 4815

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 242  tgtgtctattgccaacaagca 262
            |||||||||||||||||||||
Sbjct: 1396 tgtgtctattgccaacaagca 1376
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>emb|X73148.1|SGDNAORF S.griseus DNA sequence for ORF's 1-6
          Length = 4584

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   agtgccacccccgcgtcgctc 118
            |||||||||||||||||||||
Sbjct: 1948 agtgccacccccgcgtcgctc 1928
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>gb|AC108777.7| Mus musculus chromosome 18, clone RP23-368H22, complete sequence
          Length = 216024

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 346    agaaagaggactgctggtccattc 369
              |||||||||||||| |||||||||
Sbjct: 108829 agaaagaggactgcaggtccattc 108806
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>gb|AC175749.2| Pan troglodytes BAC clone CH251-1124N9 from chromosome y, complete
             sequence
          Length = 176979

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 12743 tccattcatttccattcaat 12762
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>gb|AY442436.1| Staphylococcus aureus SA0317 gene, SA0317-2 allele, complete
           sequence
          Length = 546

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 tctcctctttgtgtctattg 252
           ||||||||||||||||||||
Sbjct: 351 tctcctctttgtgtctattg 332
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>gb|AY442435.1| Staphylococcus aureus SA0317 gene, SA0317-1 allele, complete
           sequence
          Length = 545

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 tctcctctttgtgtctattg 252
           ||||||||||||||||||||
Sbjct: 350 tctcctctttgtgtctattg 331
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>gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, complete sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 99459 tccattcatttccattcaat 99478
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>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11,
             complete sequence
          Length = 158354

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   aaaaaagaaagcgagaggaa 465
             ||||||||||||||||||||
Sbjct: 33260 aaaaaagaaagcgagaggaa 33279
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>gb|AC127380.4| Homo sapiens BAC clone RP11-1324J5 from UL, complete sequence
          Length = 198735

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 80201 tccattcatttccattcaat 80220
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>gb|AC122884.2| Mus musculus BAC clone RP23-88O13 from 5, complete sequence
          Length = 160295

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 18465 tccattcatttccattcaat 18484
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>gb|AY171025.1| Ericameria ophitidis RR163 internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 626

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 cgcgtcgctcccatcaaccc 128
           ||||||||||||||||||||
Sbjct: 420 cgcgtcgctcccatcaaccc 439
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>gb|AY171015.1| Ericameria gilmanii RR251 internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 631

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 cgcgtcgctcccatcaaccc 128
           ||||||||||||||||||||
Sbjct: 420 cgcgtcgctcccatcaaccc 439
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>emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 191752

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 26962 tccattcatttccattcaat 26981
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 353176 tctcctctttgtgtctattg 353157
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>emb|AL669840.5| Mouse DNA sequence from clone RP23-43J1 on chromosome 11, complete
            sequence
          Length = 103555

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 429  gatttggccactagaacaaa 448
            ||||||||||||||||||||
Sbjct: 4071 gatttggccactagaacaaa 4090
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>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence
          Length = 161405

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 147372 tccattcatttccattcaat 147391



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 105307 tccattcatttccattcaat 105326
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>gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complete sequence
          Length = 188672

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 86838 tccattcatttccattcaat 86857



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 13448 tccattcatttccattcaat 13429
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>dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, complete sequences
          Length = 193714

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 169556 tccattcatttccattcaat 169575
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 363     tccattcatttccattcaat 382
               ||||||||||||||||||||
Sbjct: 6014305 tccattcatttccattcaat 6014324
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 374543 tctcctctttgtgtctattg 374524
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    aattagtagattaattcaag 206
              ||||||||||||||||||||
Sbjct: 833320 aattagtagattaattcaag 833339
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 405460 tctcctctttgtgtctattg 405441
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 323450 tctcctctttgtgtctattg 323431
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 381539 tctcctctttgtgtctattg 381520
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>gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, complete sequence
          Length = 142047

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 433   tggccactagaacaaaaaagaaag 456
             |||||| |||||||||||||||||
Sbjct: 70627 tggccaatagaacaaaaaagaaag 70604
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>gb|AC023426.29| Homo sapiens 12 BAC RP11-396L8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 148610

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 435    gccactagaacaaaaaagaaagcgagag 462
              ||||||||||||||||||| || |||||
Sbjct: 107537 gccactagaacaaaaaagagagagagag 107564
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>gb|AC092854.14| Homo sapiens chromosome 22 clone rp11-39n6 map 22q11, complete sequence
          Length = 163955

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 144732 tccattcatttccattcaat 144751
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>gb|AC010332.7|AC010332 Homo sapiens chromosome 19 clone CTD-3018O17, complete sequence
          Length = 121287

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   tggatgcgaagggacagaga 513
             ||||||||||||||||||||
Sbjct: 41212 tggatgcgaagggacagaga 41193
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 90      caaaccctagtgccacccccgcgt 113
               |||||||||||||| |||||||||
Sbjct: 4558693 caaaccctagtgccgcccccgcgt 4558716
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>gb|AF547983.1| Schizosaccharomyces japonicus mitochondrial DNA, complete genome
          Length = 80059

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ttacaaattaattagtagat 197
             ||||||||||||||||||||
Sbjct: 47185 ttacaaattaattagtagat 47204
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>gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromosome y, complete
             sequence
          Length = 176115

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 47971 tccattcatttccattcaat 47990
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>gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chromosome y, complete
              sequence
          Length = 178039

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 175012 tccattcatttccattcaat 175031
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>gb|AC146179.2| Pan troglodytes BAC clone RP43-36B22 from chromosome 7, complete sequence
          Length = 159208

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 145455 tccattcatttccattcaat 145436
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>gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chromosome y, complete
             sequence
          Length = 230623

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 94641 tccattcatttccattcaat 94622
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>gb|AC106819.3| Homo sapiens chromosome 16 clone RP11-696P19, complete sequence
          Length = 122793

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 50518 tccattcatttccattcaat 50499



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 38693 tccattcatttccattcaat 38674



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 26991 tccattcatttccattcaat 27010



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 19398 tccattcatttccattcaat 19417



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 13292 tccattcatttccattcaat 13311



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tccattcatttccattcaat 382
            ||||||||||||||||||||
Sbjct: 7478 tccattcatttccattcaat 7497



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tccattcatttccattcaat 382
            ||||||||||||||||||||
Sbjct: 1639 tccattcatttccattcaat 1658
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>gb|AC144895.2| Homo sapiens BAC clone RP11-399H16 from 2, complete sequence
          Length = 153799

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  tccattcatttccattcaat 382
            ||||||||||||||||||||
Sbjct: 5258 tccattcatttccattcaat 5277
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>gb|AC074316.7| Staphylococcus aureus clone sabac-1, complete sequence
          Length = 56268

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   tctcctctttgtgtctattg 252
             ||||||||||||||||||||
Sbjct: 52215 tctcctctttgtgtctattg 52234
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>gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, complete sequence
          Length = 159722

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 39350 tccattcatttccattcaat 39331
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>gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, complete sequence
          Length = 174688

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    tccattcatttccattcaat 382
              ||||||||||||||||||||
Sbjct: 116715 tccattcatttccattcaat 116696
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>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence
          Length = 190137

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 68704 tccattcatttccattcaat 68685



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   tccattcatttccattcaat 382
             ||||||||||||||||||||
Sbjct: 26639 tccattcatttccattcaat 26620
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 354531 tctcctctttgtgtctattg 354512
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>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0005A05
          Length = 162520

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     caaaccctagtgccacccccgcgt 113
              |||||||||||||| |||||||||
Sbjct: 153423 caaaccctagtgccgcccccgcgt 153446
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 374586 tctcctctttgtgtctattg 374567
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>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090D06
          Length = 174500

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    caaaccctagtgccacccccgcgt 113
             |||||||||||||| |||||||||
Sbjct: 46057 caaaccctagtgccgcccccgcgt 46080
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>gb|AC113288.7| Mus musculus chromosome 5, clone RP23-414I12, complete sequence
          Length = 185599

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 363  tccattcatttccattcaat 382
            ||||||||||||||||||||
Sbjct: 9437 tccattcatttccattcaat 9418
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tctcctctttgtgtctattg 252
              ||||||||||||||||||||
Sbjct: 370656 tctcctctttgtgtctattg 370637
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>emb|BX537909.1|HSM806017 Homo sapiens mRNA; cDNA DKFZp686G074 (from clone DKFZp686G074)
          Length = 6213

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 494  tggatgcgaagggacagaga 513
            ||||||||||||||||||||
Sbjct: 1233 tggatgcgaagggacagaga 1252
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>gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complete sequence
          Length = 173036

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 493    ctggatgcgaagggacagagagat 516
              |||||||||||||| |||||||||
Sbjct: 128955 ctggatgcgaagggccagagagat 128978
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>gb|AF024501.2| Caenorhabditis elegans cosmid F39E9, complete sequence
          Length = 36471

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   aaaaaagaaagcgagaggaa 465
             ||||||||||||||||||||
Sbjct: 21349 aaaaaagaaagcgagaggaa 21330
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>gb|M21305.1|HUMASAT3 Human alpha satellite and satellite 3 junction DNA sequence
          Length = 1741

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 363 tccattcatttccattcaat 382
           ||||||||||||||||||||
Sbjct: 691 tccattcatttccattcaat 672
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>emb|X83395.1|HSSAT221 H.sapiens satellite 2 DNA (L23-21)
          Length = 160

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 363 tccattcatttccattcaat 382
           ||||||||||||||||||||
Sbjct: 117 tccattcatttccattcaat 136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,904,834
Number of Sequences: 3902068
Number of extensions: 4904834
Number of successful extensions: 150111
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149297
Number of HSP's gapped (non-prelim): 811
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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