ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-as... 28 5.2
2HMEN_ARTSF (Q05640) Homeobox protein engrailed 28 5.2
3ATOX1_MOUSE (O08997) Copper transport protein ATOX1 (Metal trans... 28 6.8
4ATOX1_CANFA (Q9TT99) Copper transport protein ATOX1 (Metal trans... 28 6.8
5AHM7_ARATH (Q9SH30) Putative copper-transporting ATPase 3 (EC 3.... 28 6.8
6ATOX1_SHEEP (Q9XT28) Copper transport protein ATOX1 (Metal trans... 28 8.9
7ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4) 28 8.9

>INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-associated tight|
           junction protein) (Protein associated to tight
           junctions) (Channel-interacting PDZ domain-containing
           protein)
          Length = 1834

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 158 PSDLIQRFHSPLPLSAPSPFKNQPISRAMSQTVELRVGMSCE 33
           P+D +   HS L L AP  F+++P    +     L +G S +
Sbjct: 797 PADAVHEIHSSLILEAPQGFRDEPYLEELVDEPFLDLGKSLQ 838



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>HMEN_ARTSF (Q05640) Homeobox protein engrailed|
          Length = 349

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 155 SDLIQRFHSPLPLS--APSPFKNQPISRAMSQTVELRVGMSCEGCVGAV 15
           S+L +R+  P PLS   P P  ++P S  MS  +    G+S +  +  +
Sbjct: 19  SNLTERYDGPSPLSASTPGPSPDRPGSATMSSPLSSPTGISYQSLLSGI 67



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>ATOX1_MOUSE (O08997) Copper transport protein ATOX1 (Metal transport protein|
          ATX1)
          Length = 68

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 59 ELRVGMSCEGCVGAVKRVL 3
          E  V M+CEGC  AV RVL
Sbjct: 5  EFSVDMTCEGCAEAVSRVL 23



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>ATOX1_CANFA (Q9TT99) Copper transport protein ATOX1 (Metal transport protein|
          ATX1)
          Length = 68

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 59 ELRVGMSCEGCVGAVKRVL 3
          E  V M+CEGC  AV RVL
Sbjct: 5  EFSVDMTCEGCSNAVSRVL 23



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>AHM7_ARATH (Q9SH30) Putative copper-transporting ATPase 3 (EC 3.6.3.4)|
          Length = 995

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 95  NQPISRAMSQTVELRVGMSCEGCVGAVKRVL 3
           + PISRA+ Q +    GM+C  C G+V++ +
Sbjct: 47  DDPISRAVFQVL----GMTCSACAGSVEKAI 73



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>ATOX1_SHEEP (Q9XT28) Copper transport protein ATOX1 (Metal transport protein|
          ATX1) (Copper chaperone SAH)
          Length = 68

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 59 ELRVGMSCEGCVGAVKRVL 3
          E  V M+CEGC  AV RVL
Sbjct: 5  EFSVDMTCEGCSNAVTRVL 23



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>ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 915

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 95  NQPISRAMSQTVELRV-GMSCEGCVGAVKRVL 3
           N   + A SQT+ L + GM+C  CV +V++ L
Sbjct: 163 NTEATEASSQTLSLLIKGMTCASCVASVEKAL 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,981,681
Number of Sequences: 219361
Number of extensions: 207092
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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