ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GATB_SYNEL (Q8DGC4) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 28 4.3
2CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 28 7.4

>GATB_SYNEL (Q8DGC4) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 213 QYRSSRVQFQGI---EFQKKSEGDEAPKLVSSGLVEKSRP 103
           QYR+ + + QG    +  KKS G   PKL +  L +K  P
Sbjct: 459 QYRAGKTKLQGFFVGQLMKKSGGRADPKLANQLLAQKLNP 498



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 204 SSRVQFQGIEFQKKSEG-DEAPKLVSSGLVEKSRPYGIV 91
           S + ++QG+   +KSEG D+   LVS    EK++ YGIV
Sbjct: 46  SEKAEYQGVWKHEKSEGHDDYGLLVS----EKAKKYGIV 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,847,485
Number of Sequences: 219361
Number of extensions: 657485
Number of successful extensions: 1934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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