ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal19f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OCLN_CANFA (Q28269) Occludin 31 2.4
2Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase ... 30 4.1
3OFUT1_CAEEL (Q18014) Putative GDP-fucose protein O-fucosyltransf... 30 4.1
4YL671_MIMIV (Q5UNT3) Hypothetical protein L671 30 5.3
5ATL1O_ARATH (Q8LFY8) RING-H2 finger protein ATL1O (RING-H2 finge... 29 9.1
6FOXO4_HUMAN (P98177) Putative fork head domain transcription fac... 29 9.1

>OCLN_CANFA (Q28269) Occludin|
          Length = 521

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +2

Query: 380 LKWSSSAR*DHKVLL--AAYAATPCPE----LRCSESG*FWRAPAPARRGHQRPPAPWVP 541
           + +SS+ + + K L   ++Y +TP PE    L  +     +R P  +  GH  PP+   P
Sbjct: 322 MAYSSNGKVNDKRLYPESSYKSTPVPEVVQELPATSPADDFRQPRYSSSGHLEPPSKRAP 381

Query: 542 GRAHTVRPR 568
            +  T RP+
Sbjct: 382 SKGRTGRPK 390



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>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +2

Query: 443 PCPELRC---SESG*FWRA--PAPARRGHQRPPAPWVPGRAHTVRPRTCPCGVSC 592
           PC   R    + S   WR   PAP R G  RPP P     + + RPR   C   C
Sbjct: 2   PCTHCRTPNGTSSSATWRTARPAPRRCGSCRPPPP--GSASPSPRPRRASCATGC 54



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>OFUT1_CAEEL (Q18014) Putative GDP-fucose protein O-fucosyltransferase 1|
           precursor (EC 2.4.1.221) (Peptide-O-fucosyltransferase)
           (O-FucT-1)
          Length = 389

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 278 PPPDHQIASWSGSPCPAPSIKSIYSNHQR*EKKFLKWSSSAR*DHKVLLAAYAATP 445
           P  ++ + ++S +P P PS   ++S      +K+L+WSS      K  ++A  A P
Sbjct: 183 PSEEYPVLAFSSAPAPFPSKGKVWSI-----QKYLRWSSRITEQAKKFISANLAKP 233



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>YL671_MIMIV (Q5UNT3) Hypothetical protein L671|
          Length = 152

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 224 IGRSTDGS*GCDLIFFPAFVVSPRPHFCLVETQLSMSCSYIWLETTLLCITC 69
           IG  T+G   C  I        P   F  +E +  + C YI  +T ++C+ C
Sbjct: 14  IGLETNGKFWCKFI-------GPNKFFICLEGEFEILCDYIVAQTGIICLDC 58



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>ATL1O_ARATH (Q8LFY8) RING-H2 finger protein ATL1O (RING-H2 finger protein|
           ATL11)
          Length = 413

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 9/33 (27%)
 Frame = +2

Query: 278 PPPDH-----QIASWSGSP----CPAPSIKSIY 349
           P PD+     Q+  WS SP    CP+PSI ++Y
Sbjct: 38  PEPDYYTISPQLPPWSSSPQPSPCPSPSISAVY 70



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>FOXO4_HUMAN (P98177) Putative fork head domain transcription factor AFX1|
           (Forkhead box protein O4)
          Length = 505

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 266 GSTPPPPDHQIASWSGSPC 322
           G+TP  P    A WSGSPC
Sbjct: 225 GATPTSPVGHFAKWSGSPC 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,206,598
Number of Sequences: 219361
Number of extensions: 2129911
Number of successful extensions: 5820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5805
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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